Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZY7 |
| ProteomeId | EsuBft102_21 |
| Protein domains | IPR002182 |
| Protein domains | IPR027417 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | apoptotic protease-activating factor 1 os:danio rerio gn:apaf1 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1821 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.35e-201 |
| EggNOG OGs | COG0457@1|root,KOG1840@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K10407 |
| KEGG Pathway | ko05132,map05132 |
| Description | determination of stomach left/right asymmetry |
| COG category | C |
| BRITE | ko00000,ko00001,ko03019,ko04812 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0043531 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_21a-0001 ID=EsuBft102_21a-0001|Name=EsuBft102_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1821bp|location=Sequence derived from alignment at Scaffold_372:66397..68841- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCGAGACGGTGGAGACGGTGTACCAAACCCGAGACGAGCTAGCAGC
GCTAGAGAAGAGGTGCACGTACATGACGGCATGCATCATCGCCAAGTTTA
GGCATGCACACCCTGGCTCGGCACCAAACGTGTCTCCTCTCGAGGACTGC
GTTATGGAGGCGGAGAAATTTGTGGAACGGCGTAAAAAACGAACAATGGA
ACAAATGGTCCAGAATCAAGCGGCCGCTCGGAAGGAGCTCTTGGCAAACC
AAGAAATCATCATTGATCGTCTGCCTAAGCCGCCGATCAAGAAGGCTTAT
GTTCCCCAGGGCACGCCGACGCGCAAGAGCTGGCACGTTGAGCGCCATGT
GACGGAAACGGTAGTTGAGGCGCTTACGGGTGAAGCAGGACCGCGCTTAG
TCGGACTCGTTGGCGACAGCGGGGCGGGCAAGACCACTGCCGCGGCGGAG
CTTGTTAGGAGTAACGTGGTGAGGGAGTCATTCTCTGATGGTATCGTGTG
GTTGACGGTTAACTACGGCGCGAACAAACGTCTCCCATCCTTGATGCTGC
AGCTGGCCCGTATGGTGCAAGAGGATATCGGGGGCAGGGTGGGTGGTCAT
CCCAATGAATCTGGTGGCAATGCTGATGCCTACATCAAGCAGAGGATGGA
GAACGGTCACGGGGGCAAAGGGTTGAAGTGTCTTGCAGTAGCGGACAACG
TGTGGGAGAAGGAGGTGGTATCAATGCTGCTGAAGACTGGAATGACAGTC
CTCCTCTCGACCCGCCATGAAGAACTGGTGACTGGGGCACGAGGAGTGCC
CGTGCGATTGGACGAGCTGTCCGCGAGAGATGCGGAGTCCGTGCTGAGGA
GCGCAGCAGAGCTACCCCCAGCAGTGCGCTTGCCTGACGATGCTGTTGAT
CTGATCGATCTGTGCGGCCGCGTGGCGATGGACCTGGCGTTCGTGGGTCG
GTGGAGCACCGTTCGCGGGAGGCACGATCGAGTGGCTTGGTCAGATGCGG
CCGCAAAGGTGCGCGCCGAGATCGCCAAGATCGAAGGAGATGACATAGTG
GATGGTGCTCGAGGGAATCGGCGGAAGGCCATTCTCCAGGCCGGCTTGGA
GGATCTTGCAATCGGGTCGGACGACGAGCGCGTGCAGCGTCTGTACTTGT
CGCTTGCTGTTTTGCCGGATGACCAAGGCATTCAAGTACATGATGCTGCG
TTGCTGCTGTATGATCGAGATCCTACAGCTGAGGACGAGGAATCGGTGGC
ACGGGTGTTGGACGTTTTAGAACGCTGGTCTGTCCTGCGGTCAACATGGG
CCTACAAGTACTACATGCACGATGTACAATCGGAATTCGCAAGGGCAAGC
CTCATGGATCGTGGCGATGTACGTCGGCATGCCTTGAGGAGATGGGTGGG
ATACATCTCTTCGCTTGATACTGTCAGATCCTACAATGCTGACTATCTCA
AGCATCAATGGCTGGATGTGGAAAAGGTTGGTGGGGAGGGTTGGGATGAA
ACCCATCCGTGCGAGACCGCGCTTGCTGAGATGGACGACCCAGAACCCTT
GCTCCAAGAATCCATAGCGGCGGTGGCAAAAGCTCACGAAGCGCACGAAG
ACTGGGAGAAAGCTAGCACCATATGGCATCGATCACTCGGCGTCAGCACC
TGGTGGGGCCAATCACTCGATGGCGACGACGAGCACCGTTTTAGGGCTTT
GAGGGCTTTGGAAGAACCTGAATCCGGAATCATCGTGGAATCGCGGCCCC
ACCCAATCGCTTACGCCCGTAAAACGAACAGCATTGTAGAAAAAGACCGA
GTGGCGAGAGAAGTTGTTTGA back to topprotein sequence of EsuBft102_21a-0001 >EsuBft102_21 ID=EsuBft102_21|Name=EsuBft102_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=606bp
MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDC
VMEAEKFVERRKKRTMEQMVQNQAAARKELLANQEIIIDRLPKPPIKKAY
VPQGTPTRKSWHVERHVTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAE
LVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGH
PNESGGNADAYIKQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTV
LLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVD
LIDLCGRVAMDLAFVGRWSTVRGRHDRVAWSDAAAKVRAEIAKIEGDDIV
DGARGNRRKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAA
LLLYDRDPTAEDEESVARVLDVLERWSVLRSTWAYKYYMHDVQSEFARAS
LMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDE
THPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKASTIWHRSLGVST
WWGQSLDGDDEHRFRALRALEEPESGIIVESRPHPIAYARKTNSIVEKDR
VAREVV back to topmRNA from alignment at Scaffold_372:66397..68841- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_21a-0001 ID=EsuBft102_21a-0001|Name=EsuBft102_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2445bp|location=Sequence derived from alignment at Scaffold_372:66397..68841- (Ectocarpus subulatus male Bft15b)
ATGCGCGAGACGGTGGAGACGGTGTACCAAACCCGAGACGAGCTAGCAGC
GCTAGAGAAGAGGTGCACGTACATGACGGCATGCATCATCGCCAAGTTTA
GGCATGCACACCCTGGCTCGGCACCAAACGTGTCTCCTCTCGAGGACTGC
GTTATGGAGGCGGAGAAATTTGTGGAACGGCGTAAAAAACGAACAATGGT
ATGGTCGTGAAGGCCTTCAGCGTCAAGGACGAGCTTGCCACACTGAACGC
ACGTATCGACCGCTTGGTGGGCGACTTGGGTCTGGCCGGCATCGCCACCG
TTTTGGGCGAGGTCACCGACTTGAGGGTGATGTTGGTAATTTTCAATCTT
GAATTTGTCAGGAAAGGGGGTCGCTTTCCGTTCCACCGCTGCTTGCAACG
CAACCCTTTGGAGATGACAATGGTGTAGCCGCCTCGGCCTCAAGCGTGTC
GATCATCTCATCGTTTGCGTCCCCGGTAGATGGTTCGGCCACGAACTCAT
TCCCTTCCCGCCCTCTTCCCGGCAGTATGGCGATCAACCCTAACTCCCTT
GGCACAACACGTTCGTACATCTTCGTGCCAGCTCATATTGGGAGCCTTTC
ATCTGTTTCTTTATTCCACGCCCCGGACATACCACGACTGCAGCTATCTC
GCACACAAGAAAACCGTCGAGCAAATGCCTTGGCCGTTGTTTGCAGCTGC
TGTCAAAAAACGAATACCTTTTGCGACGCCAAACGAAGTTTAAGACGAAA
CGAGCTCGGTCCACTCCGGTGGTGATTTCCACTATTCCTACGTCTTGGAT
TTGGCAACACATGAGCGTTCAGGAACAAATGGTCCAGAATCAAGCGGCCG
CTCGGAAGGAGCTCTTGGCAAACCAAGAAATCATCATTGATCGTCTGCCT
AAGCCGCCGATCAAGAAGGCTTATGTTCCCCAGGGCACGCCGACGCGCAA
GAGCTGGCACGTTGAGCGCCATGTGACGGAAACGGTAGTTGAGGCGCTTA
CGGGTGAAGCAGGACCGCGCTTAGTCGGACTCGTTGGCGACAGCGGGGCG
GGCAAGACCACTGCCGCGGCGGAGCTTGTTAGGAGTAACGTGGTGAGGGA
GTCATTCTCTGATGGTATCGTGTGGTTGACGGTTAACTACGGCGCGAACA
AACGTCTCCCATCCTTGATGCTGCAGCTGGCCCGTATGGTGCAAGAGGAT
ATCGGGGGCAGGGTGGGTGGTCATCCCAATGAATCTGGTGGCAATGCTGA
TGCCTACATCAAGCAGAGGATGGAGAACGGTCACGGGGGCAAAGGGTTGA
AGTGTCTTGCAGTAGCGGACAACGTGTGGGAGAAGGAGGTGGTATCAATG
CTGCTGAAGACTGGAATGACAGTCCTCCTCTCGACCCGCCATGAAGAACT
GGTGACTGGGGCACGAGGAGTGCCCGTGCGATTGGACGAGCTGTCCGCGA
GAGATGCGGAGTCCGTGCTGAGGAGCGCAGCAGAGCTACCCCCAGCAGTG
CGCTTGCCTGACGATGCTGTTGATCTGATCGATCTGTGCGGCCGCGTGGC
GATGGACCTGGCGTTCGTGGGTCGGTGGAGCACCGTTCGCGGGAGGCACG
ATCGAGTGGCTTGGTCAGATGCGGCCGCAAAGGTGCGCGCCGAGATCGCC
AAGATCGAAGGAGATGACATAGTGGATGGTGCTCGAGGGAATCGGCGGAA
GGCCATTCTCCAGGCCGGCTTGGAGGATCTTGCAATCGGGTCGGACGACG
AGCGCGTGCAGCGTCTGTACTTGTCGCTTGCTGTTTTGCCGGATGACCAA
GGCATTCAAGTACATGATGCTGCGTTGCTGCTGTATGATCGAGATCCTAC
AGCTGAGGACGAGGAATCGGTGGCACGGGTGTTGGACGTTTTAGAACGCT
GGTCTGTCCTGCGGTCAACATGGGCCTACAAGTACTACATGCACGATGTA
CAATCGGAATTCGCAAGGGCAAGCCTCATGGATCGTGGCGATGTACGTCG
GCATGCCTTGAGGAGATGGGTGGGATACATCTCTTCGCTTGATACTGTCA
GATCCTACAATGCTGACTATCTCAAGCATCAATGGCTGGATGTGGAAAAG
GTTGGTGGGGAGGGTTGGGATGAAACCCATCCGTGCGAGACCGCGCTTGC
TGAGATGGACGACCCAGAACCCTTGCTCCAAGAATCCATAGCGGCGGTGG
CAAAAGCTCACGAAGCGCACGAAGACTGGGAGAAAGCTAGCACCATATGG
CATCGATCACTCGGCGTCAGCACCTGGTGGGGCCAATCACTCGATGGCGA
CGACGAGCACCGTTTTAGGGCTTTGAGGGCTTTGGAAGAACCTGAATCCG
GAATCATCGTGGAATCGCGGCCCCACCCAATCGCTTACGCCCGTAAAACG
AACAGCATTGTAGAAAAAGACCGAGTGGCGAGAGAAGTTGTTTGA back to topCoding sequence (CDS) from alignment at Scaffold_372:66397..68841- >EsuBft102_21a-0001 ID=EsuBft102_21a-0001|Name=EsuBft102_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1821bp|location=Sequence derived from alignment at Scaffold_372:66397..68841- (Ectocarpus subulatus male Bft15b)
ATGCGCGAGACGGTGGAGACGGTGTACCAAACCCGAGACGAGCTAGCAGC
GCTAGAGAAGAGGTGCACGTACATGACGGCATGCATCATCGCCAAGTTTA
GGCATGCACACCCTGGCTCGGCACCAAACGTGTCTCCTCTCGAGGACTGC
GTTATGGAGGCGGAGAAATTTGTGGAACGGCGTAAAAAACGAACAATGGA
ACAAATGGTCCAGAATCAAGCGGCCGCTCGGAAGGAGCTCTTGGCAAACC
AAGAAATCATCATTGATCGTCTGCCTAAGCCGCCGATCAAGAAGGCTTAT
GTTCCCCAGGGCACGCCGACGCGCAAGAGCTGGCACGTTGAGCGCCATGT
GACGGAAACGGTAGTTGAGGCGCTTACGGGTGAAGCAGGACCGCGCTTAG
TCGGACTCGTTGGCGACAGCGGGGCGGGCAAGACCACTGCCGCGGCGGAG
CTTGTTAGGAGTAACGTGGTGAGGGAGTCATTCTCTGATGGTATCGTGTG
GTTGACGGTTAACTACGGCGCGAACAAACGTCTCCCATCCTTGATGCTGC
AGCTGGCCCGTATGGTGCAAGAGGATATCGGGGGCAGGGTGGGTGGTCAT
CCCAATGAATCTGGTGGCAATGCTGATGCCTACATCAAGCAGAGGATGGA
GAACGGTCACGGGGGCAAAGGGTTGAAGTGTCTTGCAGTAGCGGACAACG
TGTGGGAGAAGGAGGTGGTATCAATGCTGCTGAAGACTGGAATGACAGTC
CTCCTCTCGACCCGCCATGAAGAACTGGTGACTGGGGCACGAGGAGTGCC
CGTGCGATTGGACGAGCTGTCCGCGAGAGATGCGGAGTCCGTGCTGAGGA
GCGCAGCAGAGCTACCCCCAGCAGTGCGCTTGCCTGACGATGCTGTTGAT
CTGATCGATCTGTGCGGCCGCGTGGCGATGGACCTGGCGTTCGTGGGTCG
GTGGAGCACCGTTCGCGGGAGGCACGATCGAGTGGCTTGGTCAGATGCGG
CCGCAAAGGTGCGCGCCGAGATCGCCAAGATCGAAGGAGATGACATAGTG
GATGGTGCTCGAGGGAATCGGCGGAAGGCCATTCTCCAGGCCGGCTTGGA
GGATCTTGCAATCGGGTCGGACGACGAGCGCGTGCAGCGTCTGTACTTGT
CGCTTGCTGTTTTGCCGGATGACCAAGGCATTCAAGTACATGATGCTGCG
TTGCTGCTGTATGATCGAGATCCTACAGCTGAGGACGAGGAATCGGTGGC
ACGGGTGTTGGACGTTTTAGAACGCTGGTCTGTCCTGCGGTCAACATGGG
CCTACAAGTACTACATGCACGATGTACAATCGGAATTCGCAAGGGCAAGC
CTCATGGATCGTGGCGATGTACGTCGGCATGCCTTGAGGAGATGGGTGGG
ATACATCTCTTCGCTTGATACTGTCAGATCCTACAATGCTGACTATCTCA
AGCATCAATGGCTGGATGTGGAAAAGGTTGGTGGGGAGGGTTGGGATGAA
ACCCATCCGTGCGAGACCGCGCTTGCTGAGATGGACGACCCAGAACCCTT
GCTCCAAGAATCCATAGCGGCGGTGGCAAAAGCTCACGAAGCGCACGAAG
ACTGGGAGAAAGCTAGCACCATATGGCATCGATCACTCGGCGTCAGCACC
TGGTGGGGCCAATCACTCGATGGCGACGACGAGCACCGTTTTAGGGCTTT
GAGGGCTTTGGAAGAACCTGAATCCGGAATCATCGTGGAATCGCGGCCCC
ACCCAATCGCTTACGCCCGTAAAACGAACAGCATTGTAGAAAAAGACCGA
GTGGCGAGAGAAGTTGTTTGA back to top
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