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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G5K3 |
| ProteomeId | EsuBft102_22 |
| Protein domains | SSF158997 |
| Protein domains | IPR005651 |
| Protein domains | PTHR12773 |
| Protein domains | G3DSA |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | multifunctional methyltransferase subunit trm112-like protein at1g78190 os:arabidopsis thaliana [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2004 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.06e-86 |
| EggNOG OGs | KOG1088@1|root,KOG1088@2759|Eukaryota |
| Ec32 ortholog description | Uncharacterised protein family UPF0434/Trm112 |
| Ec32 ortholog | Ec-22_000960.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | TRMT112 |
| KEGG ko | ko:K15448 |
| GOs | GO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0018364,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0036265,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046982,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:2000232,GO:2000234 |
| Description | peptidyl-glutamine methylation |
| COG category | S |
| BRITE | ko00000,ko03012,ko03016 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0051726 |
| GO | 0042274 |
| GO | 0042273 |
| GO | 0034708 |
| GO | 0070062 |
| GO | 0008757 |
| GO | 0005515 |
| GO | 0001510 |
| GO | 0006364 |
| GO | 0018364 |
| GO | 0005829 |
| GO | 0035265 |
| GO | 0008276 |
| GO | 0008173 |
| EC | 2.1.1 |
| GO | 0042127 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2004bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GAACAGCTACGGAGTACAGAGGCTTAACCCGCCTGGGACACACCAACTGA
TTACACATACACACACCCGCGTGCCGGCGCGTGTCGTTTAGACCCGACGA
AAACCGAAAGGAGGGTTACAGGCTGCTGTCAATCGGCCATCGCCTGCCAC
CGCTGGGCTTCGCTATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCG
ATGAAGGGAGTGGTGGAGGGCTACCCCCTACGCATCGAGGCGACCGACGT
ACAGATGGTGGAATCAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGA
CCACTTTGGACTGGGGGGCGCTCTGCAAAGCGGCAGCCGAGATTGGCATG
CCCGAGGGGTCTCTCCCACCAGCGTTAACGCCGGAGCTTCTGGAAGACTC
TTCCTTCTTGGAGGCTTTGCATCGCGTCTTGATGGACATGCACGTCGTGG
AGGGCACTCTCGTCTGTCCCGAGACCGGACGCAGGTTTCCCATCGCTGAA
GGTGTTCCGAATCTCATGTGCACCGAGGACGAGGTGCGATGACGTACCGT
ACCGGCGCGAGAACCTCAGCCTCGTCCGAATTTCTCGGGCGCCTGAGCGG
GGGGGTGTGTGTACTCATAGCCGTCTATGCCGTTCTCGTGAGACCATTGA
CCTTCCTATCCATACAAAACCGGAACGGAGTACGTCGGGTTTTCACCCGA
TCAGGCTATCACACCACCAAGTGCGAATCGCTCGCCCGGCGAGTCGCATG
GAGCGTGCGCTGGGAGCGGGGGGGTGATGGCGATTTTTGGAGCTTCCAGC
CCGACTTTCTGGACCACGAACAGGGCGGAATGGTTGAGCGACCAGGGCAA
CCCTACAGAAGATGCGTCGCCATGGTGCTGCTGGTAGTGATATTGCCTAC
CGCCACGTGGTGGCTTGTCGTTTGTGGATTGGGGAGTTTTTGTATGATCG
CCCCCGGCGCTGCACCTCTCCTCCCGTGCCTCTGGCCCCCCTGTCCTTGG
CGGTGAGCGGTGCACAACCAACGACTGACGTGAAACTCCCACTTGGGCGC
GCGTCCTTATACCCGGTTTAATCGGAGGAGGGGGGAGGGAAAAAAGTTTT
TGCCGTGGGGGGGACAGCTCAAACAACGGGCAGAGCGTACCCTAACCGCC
GCCACCCTCAGCCGCCTCTCCCTGTTCGACTTTCTTCAGCTGCTGGGCCA
CAGCTACAGTCAGTCGGGAGCATGTCTGCCAGCTCGTAATCTCTGTATGG
CCGAAGAGCAGTCAATCGCGTTGTTGCCCGCTTTTTGGTTGAGACACCTG
GTTGTAGTTGTATGTGGCTTCGGAGGGAAATAGTGTTCTTTCCGGTGTCT
ACCACGGTGCGGTGATTCGAGGCACCGCGCCTCACATGGTTGCAGCAACA
CTGACGACGATACCGTACTGGTGGCTCTACTGTAGTACCCCAAGACCAGG
AGAGAAACAAATGTAACATAGGCAGGGACCACCAGGGGGGCCGTGACTTG
GACTTTGTTTTTTGGTGGTGGTGGTGGTGGGGGGGGGGATTTCATTCNGT
GTATCTTTTTCTCTTTGGAAGGTATACACCAAACGAGCGCCCTACCCTGC
CATGTATCTAAGCGCAACCTGATTGACCGGTGGTCTGTCTTCAACGGGAT
GGTACACATGGCCTCAACCACCACAGGACTGCCGCTTTGTGTGGTTTGAC
ATTGATGTGCATGGAAAATAGTTTTTTACCATGACCGTTCTTTCGTACGT
TTTTCTTCCCGTGTTTCTGGGCGCCTAGGACAAGTTTTCGTCGCGCCTTC
GTCGTTGCTCCCTGAGCATCTGCGCACCAACACGCAAACACGCAGCGCGC
ACGTACACAGTGACGCTGAGATTTGCTGCCGACGTGTCAACAGTCTTGTA
AGACGGGCGATGGGATCGCTACTCAGGCCGCTGGGCGTCGGCTTTAAATA
TTGTGTTTGTTTTTTTTGTCTTAGCTTTCGGTGTGTGTCATTTGGGGGGG
GGGG back to topprotein sequence of EsuBft102_22a-0001 >EsuBft102_22 ID=EsuBft102_22|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MRLLTHNVLRSPMKGVVEGYPLRIEATDVQMVESEVKKEFVKHMATTLDW
GALCKAAAEIGMPEGSLPPALTPELLEDSSFLEALHRVLMDMHVVEGTLV
CPETGRRFPIAEGVPNLMCTEDEVR back to topmRNA from alignment at Scaffold_372:55865..60345- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4481bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)
GAACAGCTACGGAGTACAGAGGCTTAACCCGCCTGGGACACACCAACTGA
TTACACATACACACACCCGCGTGCCGGCGCGTGTCGTTTAGACCCGACGA
AAACCGAAAGGAGGGTTACAGGCTGCTGTCAATCGGCCATCGCCTGCCAC
CGCTGGGCTTCGCTATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCG
ATGAAGGGAGTGGTGGAGGGCTACCCCCTACGCATCGAGGCGACCGACGT
ACAGGTTAGACAAGACAAGACACAGGACTAACGAGTTCCCTCCAAATAGC
AGAGCTTATCGTCAGGATGTTGTTTGTTTTTGTAGGCTATTATCTCTGAT
ACTGCTGGAGGAGCGATGGTTCGTGCCTCCGTGCGGGATTGCCTCGCGTG
TAAAGTGGTATCCTCGTTCTCCGCCAACGCAGGCGGGGTCTCTCGTGTGT
CCCGTAGAAACGAAGTGGCACGGAGATTGTGGACGTCAATGACCATGTGG
GCTCCCACAAGGCTCGAGGTTGTCTTATATCTGTTCGTGTTCTGTCACGT
CCTATTCCAGCCTCGGTGAATACCAGGCAGGATGGATACGACACTGCTGT
AGTGGGATCTGGGATCTCCATCAACACCTGCCTCTCATACAGCACCAGTC
TAGTCTCTTTTCGTTATTCAAGTAGCTCCTGCCCTTTTCCTACAGTAACC
ATATCCGTCTCTCCCTCTTGGCGTCCTTACCCCGCTACCGTCCAGATGGT
GGAATCAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGACCACTTTGG
ACTGGGGGGCGCTCTGCAAAGCGGCAGCCGAGGTATGCATGTGAAGCGAT
GCTCAATTTTTCCCAACTGCAGTCCGGGGTCACGCTGTTGGAGCGACGGT
CGCGGCCAAATGGTGTCGCACTTACTTTGAGTTTTCAGCCAAAACCACGC
TTGTGCAGGAAGTTGTCCGTCTATTTTTGTGTCTCCGCATCATGCAAACG
CTTGTCGGGTATAGCGTTTACCCCCGACGCGTGTTGTTTTGAGTGGCGCA
GAAATACATCGTGATGTTTGTATTGGCTTGCCATCAAACCCACCTGCTCT
TATCCTACCATAGCCCTATTACAGCAACATACTCTTACCCCCGACCGTAA
CATCGATAACAGCAAGCAGTATCAATTTCCGAGTCTCTTTTTCAGGCCCA
TAAACGCTACTGCTGCAACCCACAGGCACCCACGTAAGCAATATGAATAC
CGAAAAGTGCGATTGATCGCTGTCGCGCTGTACTAGGGACTGTCAATAGT
GTATCTGCCCCCGCAACCAAGAGGTCGTCGATACCGGGAGAGGGTTGCGT
CGGAAAGTTCTCTTCGAGTTTCTTCCTTGTTTGTGTCGGCAGGGTCTCGC
ACCCCCTTGGTTGTGGATCAATCGACCTGTGGAGCAAGTCGAATATCTCG
CCAGCGTTCGCACTCATGAAAATTGGAAACAGGTTTGTGCTCCTGAAGAT
GTAGTCGAGCGGAATCGTATTTCCCCGCCTCTAATCTGAAACCGTAGGCG
TGGCCGTTGTAGCTGTAAAAACGTCTTATTTCTAAGAAAGCAATGCAGTA
TTTGAAACCAAAATTCCTTCCTGGTGAGGACTTCTGGCCCTGATTCCGTC
CAAGTGCTGTGGTCCTATCTTAAGCGGAGACGATTCAAAAGTATAGTATA
GCGGTTTTCAAGCTTCCAAATCCGATGTGAGAATTGTTCCAGAATTGTTC
CAGTGTACCTCACAGGGAAACCAACCTGTTTTCTTCTTTCAGCCCTTTTT
TCTTGTTTCATCGTCAACTACAGGTTAAGGCACAACAAGAAAACAAGCTT
TGCGTGAAAACACACGCGATTTTCTGTATCGGACCAACCCTCCGCAATAA
AACAAGTGTCTTACGAGAGGCAGACTGGTGTGGCCCGTGTGTGCCTTCGA
GAGACAGGCAGATAGACATCCTGTGTGAAACTCTTCTAAGAAACATGTGC
CTTCCGATGGAAGGCAGAAATCTTGTGTGAAACTCTTGCAATTGAACGTG
TTTCCAAACAAGAGACAGACATCTCTTGTGAACATCTTCCCTTTGGTGGC
CGGCCCCGTGTGCTCCTTCGTCCAGATTGGCATGCCCGAGGGGTCTCTCC
CACCAGCGTTAACGCCGGAGCTTCTGGAAGACTCTTCCTTCTTGGAGGCT
TTGCATCGCGTCTTGATGGACATGCACGTCGTGGAGGGCACTCTCGTCTG
TCCCGAGACCGGACGCAGGTTTCCCATCGCTGAAGGTGTTCCGAATCTCA
TGTGAGCTGCAGTGTCGCTGGCTCGTGTTCCAGTTTTTTTTTGCGAAATA
CTTGTCGTTTCGGGGGATCGTTGAAAGTGCGCCACATCGCCTGTCATTTC
TTGGGCCTTGCTTTTTTTCTACTTTTTTTTTGGTGTCGCTCAAGGCGTGG
ACATCTCGATTTAGTTTTCTGTTGTTGTGCCACTCTTACCCTTGGTCGGC
TTTGGTTGATGTTTCTTCCGTTCATTCTATTCTGTGAAGACAAGCCAGAC
CTCGGTTACACCAGCTGTTTTTTTTTTTTGCTCCTCGCTGTTGTTGTTAT
CGTCACAAAATATGAAGACCGCTCGTGATCGGCAGTCAACAACATCGACT
CTTCGTCGATTGTCGCTTTAACATGTTGCCCCATATGAGGCAGGCCTTCG
AGACCTGAAATATCAACAAACCAAGACAAACTTTTGCATGTCTTGCGGTA
TCGACGGTGTTCCTTATGGCGCACTGCGCTGAAAGAAAGAAGACCGATCG
TGTGAGGTGCAACAGATGGTTGTACATCTGACGCTCGTCGTACCGCGCGT
GTGCGTGCGTCTTCGTGGATCTCTTTGTGTTGGAGAAGCGTTCTGAATCC
CAGAGACAATCGAAACAGCTGCGGCAGACATCTAACCCGCACACGGCAAG
CAAGCCTTAAACAATCACCTTTCTTCCGACCAACCCGCCTGCAGGTGCAC
CGAGGACGAGGTGCGATGACGTACCGTACCGGCGCGAGAACCTCAGCCTC
GTCCGAATTTCTCGGGCGCCTGAGCGGGGGGGTGTGTGTACTCATAGCCG
TCTATGCCGTTCTCGTGAGACCATTGACCTTCCTATCCATACAAAACCGG
AACGGAGTACGTCGGGTTTTCACCCGATCAGGCTATCACACCACCAAGTG
CGAATCGCTCGCCCGGCGAGTCGCATGGAGCGTGCGCTGGGAGCGGGGGG
GTGATGGCGATTTTTGGAGCTTCCAGCCCGACTTTCTGGACCACGAACAG
GGCGGAATGGTTGAGCGACCAGGGCAACCCTACAGAAGATGCGTCGCCAT
GGTGCTGCTGGTAGTGATATTGCCTACCGCCACGTGGTGGCTTGTCGTTT
GTGGATTGGGGAGTTTTTGTATGATCGCCCCCGGCGCTGCACCTCTCCTC
CCGTGCCTCTGGCCCCCCTGTCCTTGGCGGTGAGCGGTGCACAACCAACG
ACTGACGTGAAACTCCCACTTGGGCGCGCGTCCTTATACCCGGTTTAATC
GGAGGAGGGGGGAGGGAAAAAAGTTTTTGCCGTGGGGGGGACAGCTCAAA
CAACGGGCAGAGCGTACCCTAACCGCCGCCACCCTCAGCCGCCTCTCCCT
GTTCGACTTTCTTCAGCTGCTGGGCCACAGCTACAGTCAGTCGGGAGCAT
GTCTGCCAGCTCGTAATCTCTGTATGGCCGAAGAGCAGTCAATCGCGTTG
TTGCCCGCTTTTTGGTTGAGACACCTGGTTGTAGTTGTATGTGGCTTCGG
AGGGAAATAGTGTTCTTTCCGGTGTCTACCACGGTGCGGTGATTCGAGGC
ACCGCGCCTCACATGGTTGCAGCAACACTGACGACGATACCGTACTGGTG
GCTCTACTGTAGTACCCCAAGACCAGGAGAGAAACAAATGTAACATAGGC
AGGGACCACCAGGGGGGCCGTGACTTGGACTTTGTTTTTTGGTGGTGGTG
GTGGTGGGGGGGGGGATTTCATTCNGTGTATCTTTTTCTCTTTGGAAGGT
ATACACCAAACGAGCGCCCTACCCTGCCATGTATCTAAGCGCAACCTGAT
TGACCGGTGGTCTGTCTTCAACGGGATGGTACACATGGCCTCAACCACCA
CAGGACTGCCGCTTTGTGTGGTTTGACATTGATGTGCATGGAAAATAGTT
TTTTACCATGACCGTTCTTTCGTACGTTTTTCTTCCCGTGTTTCTGGGCG
CCTAGGACAAGTTTTCGTCGCGCCTTCGTCGTTGCTCCCTGAGCATCTGC
GCACCAACACGCAAACACGCAGCGCGCACGTACACAGTGACGCTGAGATT
TGCTGCCGACGTGTCAACAGTCTTGTAAGACGGGCGATGGGATCGCTACT
CAGGCCGCTGGGCGTCGGCTTTAAATATTGTGTTTGTTTTTTTTGTCTTA
GCTTTCGGTGTGTGTCATTTGGGGGGGGGGG back to topCoding sequence (CDS) from alignment at Scaffold_372:55865..60345- >EsuBft102_22a-0001 ID=EsuBft102_22a-0001|Name=EsuBft102_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_372:55865..60345- (Ectocarpus subulatus male Bft15b)
ATGCGCCTGCTCACTCATAATGTTCTCCGATCCCCGATGAAGGGAGTGGT
GGAGGGCTACCCCCTACGCATCGAGGCGACCGACGTACAGATGGTGGAAT
CAGAGGTCAAAAAAGAGTTCGTCAAGCACATGGCGACCACTTTGGACTGG
GGGGCGCTCTGCAAAGCGGCAGCCGAGATTGGCATGCCCGAGGGGTCTCT
CCCACCAGCGTTAACGCCGGAGCTTCTGGAAGACTCTTCCTTCTTGGAGG
CTTTGCATCGCGTCTTGATGGACATGCACGTCGTGGAGGGCACTCTCGTC
TGTCCCGAGACCGGACGCAGGTTTCCCATCGCTGAAGGTGTTCCGAATCT
CATGTGCACCGAGGACGAGGTGCGATGA back to top
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