Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra85923 |
| ProteomeId | EsuBft4308_3 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 4776|Peronosporales |
| Length | 879 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.33e-29 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=879bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGT
GGTGTTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGT
CCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCT
CAGCGAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTA
TTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCA
CGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACC
GGAAGGCTCTGATAAACCTACCGATGTAG back to topprotein sequence of EsuBft4308_3a-0001 >EsuBft4308_3 ID=EsuBft4308_3|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=292bp
MQGAGEMSGPGESPDPEDALLATILETGGTGIVEDYICNSLVKEQWDEGQ
THRMKEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLRPKRDDEPA
VDKPVREAIGCLMWTKLTRLDIAVPRNKLQKIAHSSTRRIWNALVRIMSY
LNFTKNFGITYVRGSGLDLSVFVDASYADNEEDRRSTTGLAGVKEALFVR
GVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHLILEL
FKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALINLPM back to topmRNA from alignment at Scaffold_372:30354..31328- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=975bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGTGACCGTAGGTGGTACCGTAGTGTGT
GCATCCGCCAAGTCGCAGCCAGTGACGGCTCAGTCGACCTCGGAAGCAGA
GTATATGGCAGCTAGGGAGGGCGTGAAGGAGGCGTTGTTTGTGCGTGGTG
TTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGTCCTT
GAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCTCAGC
GAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTATTCA
AGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCACGCC
GACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACCGGAA
GGCTCTGATAAACCTACCGATGTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:30354..31328- >EsuBft4308_3a-0001 ID=EsuBft4308_3a-0001|Name=EsuBft4308_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=879bp|location=Sequence derived from alignment at Scaffold_372:30354..31328- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGTCGGGGCCCGGAGAATCACCGGACCCGGA
AGACGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTCG
AGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGGACAG
ACACACCGTATGAAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGGCCGAAGAGAGATGACGAGCCCGCG
GTGGATAAGCCTGTGAGGGAGGCGATCGGATGTCTGATGTGGACGAAGCT
GACGAGGCTAGACATCGCAGTGCCTCGGAACAAGCTCCAGAAGATCGCCC
ACTCATCCACCAGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTAC
CTGAACTTCACGAAGAACTTCGGCATCACCTACGTACGGGGGTCAGGACT
AGACCTAAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGAAGACA
GGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGGCGTTGTTTGTGCGT
GGTGTTCTGTCGTTCATAGCACCCGAGACGAGTGGGGCGAAGATCAAGGT
CCTTGAGGACAACAAGGGGGCTCTCGCCTTAATCGAGAACCCGTTCAGCT
CAGCGAGGAGCAAGCACATCGACGTGCGGTTCCACTTAATTCTCGAGCTA
TTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGGAGAGCAGCA
CGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTAGAGTACCACC
GGAAGGCTCTGATAAACCTACCGATGTAG back to top
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