Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G5K1 |
| ProteomeId | EsuBft4308_5 |
| Protein domains | IPR002048 |
| Protein domains | IPR011992 |
| Protein domains | IPR018247 |
| Protein domains | SSF47473 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 39 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.36e-61 |
| EggNOG OGs | KOG4308@1|root,KOG4308@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K20865 |
| KEGG Pathway | ko04621,map04621 |
| Description | interleukin-8 biosynthetic process |
| COG category | S |
| BRITE | ko00000,ko00001 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0005509 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACTTGTAGCGACCGACGTCCCGGCCCGGGCGCTCAAGACGTTGCTTC
AGAATCCGTCGACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACAT
CCCGCAAGCGACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGAC
GATCCGTCTGACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAA
GAGCAGCAGAGGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGC
ACGTCTTCCACCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGC
ATCGACAACAAGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACAT
CGGGCCCGACGTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG back to topprotein sequence of EsuBft4308_5a-0001 >EsuBft4308_5 ID=EsuBft4308_5|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MTCSDRRPGPGAQDVASESVDSRLSTPRRPASTSRKRRLPTAGSSESSRD
DPSDGRSSDCSSSTVTKSSRGRDGVKTPFDMAKHVFHLLFLEVDLDRSGC
IDNKEFGEMLLQLGKNIGPDVARHCIVRCMR back to topmRNA from alignment at Scaffold_372:27211..27896- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=686bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)
ATGACTTGTAGCGACCGACGTCCCGGTGAGAATCATGAAATTACCCTAGA
TCTTGCCAACATGCGCGCGCACTCGAGGGGGCCAGCTAGGATTATCGTGG
CGGCCGAGCTGTCCAACCGTTCCCGCGAGGAGTTCGCCTCTGGCAAAAAA
CACGCGAATTTCGCGAAGATTTTCCCGCACCGACGCAGTCACGGCATATT
TACCAATGTGCGCGCTATAACCCGCCCGGATTCGACGGCGAAGCGTGGCC
ATTGGATTAATAACGAAGGCAAATCAGTACCCCCTCGCCCACCGCACCCC
TCAGCCGTTTAGCAGGCCCGGGCGCTCAAGACGTTGCTTCAGAATCCGTC
GACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACATCCCGCAAGCG
ACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGACGATCCGTCTG
ACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAAGAGCAGCAGA
GGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGCACGTCTTCCA
CCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGCATCGACAACA
AGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACATCGGGCCCGAC
GTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:27211..27896- >EsuBft4308_5a-0001 ID=EsuBft4308_5a-0001|Name=EsuBft4308_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_372:27211..27896- (Ectocarpus subulatus male Bft15b)
ATGACTTGTAGCGACCGACGTCCCGGCCCGGGCGCTCAAGACGTTGCTTC
AGAATCCGTCGACAGCCGCCTTTCAACCCCGCGAAGACCGGCCAGTACAT
CCCGCAAGCGACGCCTTCCAACCGCCGGCTCGAGCGAGAGCTCCAGAGAC
GATCCGTCTGACGGAAGGAGCAGTGACTGCAGCAGTAGCACCGTCACGAA
GAGCAGCAGAGGCAGGGACGGCGTGAAGACGCCCTTCGACATGGCCAAGC
ACGTCTTCCACCTGCTCTTTCTAGAGGTGGACTTGGACCGGTCCGGATGC
ATCGACAACAAGGAGTTCGGGGAGATGCTGCTACAGCTGGGGAAGAACAT
CGGGCCCGACGTCGCGCGCCACTGTATCGTCAGGTGCATGCGGTAG back to top
|