Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2058_3 |
| Protein domains | SignalP-noTM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 36 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGCTCTACGCGAGGAGTGAACCCG
GGGAGCCGCCCGAGTACTGCACCGTCTTCCACCACATGGTGAAAAGCGCG
GGCTCAACCGTCAAGAGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCT
CCCGAGACCAGGTTCTGGGTCCAGAAAAGACGCGTCCGCTCATTGGGAGA
TGCGGTACAGTCCCGAGGGCCGAAGGCTGACTTGGCTTCAGTGTGGAAAG
TACCCCACGGGGGACACTTTCCTTTCTGTATTGAAGCCAAGTCAGCAAAT
TTTCCAGTACTAG back to topprotein sequence of EsuBft2058_3a-0001 >EsuBft2058_3 ID=EsuBft2058_3|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MPPHKMVLDAVRLACVFSLLVVGSDTLYARSEPGEPPEYCTVFHHMVKSA
GSTVKSLLHSGTRKEGLPRPGSGSRKDASAHWEMRYSPEGRRLTWLQCGK
YPTGDTFLSVLKPSQQIFQY back to topmRNA from alignment at Scaffold_372:13297..14791+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1495bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGGTGAGTTCTGGGGCTGCTGGCT
GCCGGAAACACGGTTGGTTGATGCTACGACGGTGTTGTGACGAAAACGAC
GTCGACGCTAACGGGTGGAATATCGTAGTGTTTTGCTTGGAGGCACTGGA
AGCATTTGAAACCAACCCGTGGGAGATAAGTACCTTGCCGTACCTTGCCC
CGCCCCCTCTCAAGCCTCGTCCTGCTGTTGTTGGTCACTTTGTTGCTAGA
AAGAGGCGAAAGGGAGAGCTTGTGTCTCGCCCTCGCTGTTCCTACTCCCA
TCCGTGTATGCCTGCTCGGAACGTGGAGTTTATCTGCTAAAGAACTGGCT
GGCATGGCAAGAGCGAAGTACGCGTTCAATCTTAGTGTCTTAATGACCAA
AACCAAGGGTGACCGATGAGCTCTTACGGAGACGCTGGAGGGTTCCGACT
GCGATGGCCTAAAACATGCCTCAAAGTTGATCATGACATCCGAACGGTTG
ACGCTGAAGCAACAAACGTCTATTATACTTTTTGCGCAGTCAGTGCGGTC
GTGAGAAAAAGTTAGCCGCCATTTTTTTCACAAGCTTCTGTCCGCCTGCG
AGAGCGGGTGCTGACTAGCGGACTAGCTAACTAGTTTTCGCAGGTTGTGG
AAAGCCTTCCGCTTGCGTGCACCCGGTAGGGCCGTGACACTTGTTGGTGA
GTGGTCTTGAGAACACGGGTAAGGTAGGCCACACCTTGTTGTACTGCTGT
ACTGCTGTATAACCACTCCTTGCAACTTGATGGAAGAGTTAAGAGGCGCA
ACCAACCATTCTCTGTTGATGCTGCTGTTTCGTCGATTTTTTCTCCTTGC
TCCTCGTCTGCAGCTCTACGCGAGGAGTGAACCCGGGGAGCCGCCCGAGT
ACTGCACCGTCTTCCACCACATGGTGAAAAGCGCGGGCTCAACCGTCAAG
AGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCTCCCGAGACCAGGTGC
GACTTATCATCTTGTGGTGGTAACATATATACGTACAGTTGTACCGTATG
CTAATTACACCGCATCCGTATGCATGTACTAGATATAAACGTGTAGTCTG
AGTACAAACACAGAAAGTATCAATCGGAAGATCGAACCGCTTCTACGCTT
CTACGCACGTGTGTCAATGGTGGCTTTTGGTGTTGCATCAGTTATCAAGC
AACTACTGTCCGGTGTTCCGCGGCCACCTCCGGAAACAAATAAATTCGTT
GACCCCCCGAGTAAGTACCCAGTCCAGCATTAGTTACGTACAGGTTCTGG
GTCCAGAAAAGACGCGTCCGCTCATTGGGAGATGCGGTACAGTCCCGAGG
GCCGAAGGCTGACTTGGCTTCAGTGTGGAAAGTACCCCACGGGGGACACT
TTCCTTTCTGTATTGAAGCCAAGTCAGCAAATTTTCCAGTACTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:13297..14791+ >EsuBft2058_3a-0001 ID=EsuBft2058_3a-0001|Name=EsuBft2058_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_372:13297..14791+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCACACAAGATGGTCTTGGATGCCGTCCGGTTGGCCTGCGTTTT
CTCTTTGCTTGTTGTTGGAAGTGACACGCTCTACGCGAGGAGTGAACCCG
GGGAGCCGCCCGAGTACTGCACCGTCTTCCACCACATGGTGAAAAGCGCG
GGCTCAACCGTCAAGAGCTTGCTTCACAGTGGTACACGCAAGGAAGGTCT
CCCGAGACCAGGTTCTGGGTCCAGAAAAGACGCGTCCGCTCATTGGGAGA
TGCGGTACAGTCCCGAGGGCCGAAGGCTGACTTGGCTTCAGTGTGGAAAG
TACCCCACGGGGGACACTTTCCTTTCTGTATTGAAGCCAAGTCAGCAAAT
TTTCCAGTACTAG back to top
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