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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 303518.XP_005753988.1 |
| ProteomeId | EsuBft2058_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | Coil |
| Protein domains | IPR000477 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR005135 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 33208|Metazoa |
| Length | 250 |
| Evalue | 5.94e-07 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39Y9N@33154|Opisthokonta,3BKRZ@33208|Metazoa,3CWQ0@33213|Bilateria,48I85@7711|Chordata,49F0F@7742|Vertebrata,4A6Z6@7898|Actinopterygii |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2502bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA
CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA
AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG
TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA
CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG
GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC
ACGACGGCGATCAAGGAGGCCATGTGCGAGAGTGTGGGCGAGGAAGGTAG
GACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTG
GCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTNNNNNNNNNNNNNNNNN
NNNNTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGG
CGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGG
GCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGAG
NATGAGGACGCCCCCACGGAAACTGTCCGCACGGCGGCGGGCGGTGATGT
TAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGG
AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGNNCCTACTTCTGGACA
CCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGA
GAAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG
TGCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAAC
CTCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACG
AGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGT
TAACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAAC
CGCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGA
GCTGACGGCTACGGTCATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGA
GGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAG
ATCTCCGAAGCGTCCAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGG
GGCCTCAAAGAACAGCGCCTTCGAGCATCGCAAGGTGGAGAGCACTGGAA
ACNTCCTACTTCCGGACGCCTACTTCTGGACACCGAAAGGTGGAGTGCAG
CACACATTCCAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTT
CATCCTCATGCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCA
AACGTGTCGACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTG
CCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG
AAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACC
TACGGGTCGCCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCG
CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACNGTTCA
TCCTCATGCGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA
CCACTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACG
TTCATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAA
GTCGCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCA
CGTGCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCG
GTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC
TGAGCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAAT
TCCACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGGCATGAGGGCG
TGCGCGTCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCA
AGGCCTCCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCT
TTGCCGCGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAG
GTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAA
GAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGG
CCTTGTGGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCG
CCTGAGTCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGT
TCGGACAAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGT
AG back to topprotein sequence of EsuBft2058_4a-0001 >EsuBft2058_4 ID=EsuBft2058_4|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=833bp
MHRCGETRRSEIRKKAHPQREVDRERHETGADVKTAAKKKAREGDLLFGT
FNVRTLAYSGRNPIGHNVMTVIQICSATGCDVIGLQETRREGQRGNVQLH
TTAIKEAMCESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGXXXXXX
XXIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKE
XEDAPTETVRTAAGGDVNAKDSFWTALDAAIREEARRVLRCQDYGXYFWT
PKGGVQHTFQSSNKGKEKYRLEFILMRQTDRRFVHNVSVKRVDFMDSDHN
LVLTTVPLPPRVAPNRRVRGNSGSSRIRIGLERLTKNKHLRVAFQNRASN
RSPPTALRRPTGETAAELTATVMSAAAETAPLARCARGQRGWYTSEAQHE
ISEASKEIKAAQQQLRGASKNSAFEHRKVESTGNXLLPDAYFWTPKGGVQ
HTFQSSNKGKEKYRLEFILMRQTDRRFVHNVSVKRVDFMDSDHNLVLTTV
PLPPRVAPNRRVRGNSGSSRIRIGLERLTKNKHLRVAFQNRASNRSPPTA
LRRPTGETAAELTATVHPHAHLKMIDVEGKRSFTTQNIKDEDGMVLRDPT
FIRQRWARWLHKLLNTKSPTVDLHAADKVKRWSTCVPVDDIPSLLEVEEA
VREMANRKAVGPDDLPAELIKLFLDGDQDRLREFHAIVVDVWQTGDGMRA
CASERTMGSTEWFDVGQGLRQGCNLAPLLFNLFFAAMLMVTVAEFDKDPK
VTADMVKIGTQVEHTGKKGRSAGKKTTVVTDVEALWAMLYAEDVAIVSRS
PESREDDVDHRARGRPVRTKRRWGGRNGDRALL back to topmRNA from alignment at Scaffold_372:9733..13078- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3346bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b)
ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA
CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA
AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG
TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA
CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG
GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC
ACGACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCGAGGAC
AAGAGGGTCGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGCGA
GAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGA
TGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTG
GGGTNNNNNNNNNNNNNNNNNNNNNTGATCATCTGGAGTGGCGCCCGTGC
TGGCACCAAGGACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGG
AGGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCATT
AGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGT
AACCTTCGTGGTGGGGACGCTCCCACGGAAACTGTCCGCACCACGGCGGG
CGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGA
TCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCCAAC
GCACGTACTGGTAGGAGNATGAGGACGCCCCCACGGAAACTGTCCGCACG
GCGGCGGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGA
CGCAGCGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGG
ACGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATGCCAAG
ATTATGGNNCCTACTTCTGGACACCGAAAGGTGGAGTGCAGCACACATTC
CAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTTCATCCTCAT
GCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCAAACGTGTCG
ACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTGCCCCTCCCC
CCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCG
GATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACCTACGGGTCG
CCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCGCTCAGGCGG
CCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGGTCATGTCGGCCGC
CGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGT
ACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCCAAAGAGATTAAG
GCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAGGT
GACCCTGAAGGCGATTCCTAAGGCGGCGCGGAAGAAGCGCAGCATCGCAA
GGTGGAGAGCACTGGAAACNTCCTACTTCCGGACGCCTACTTCTGGACAC
CGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGAG
AAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGT
GCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAACC
TCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACGA
GTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGTT
AACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAACC
GCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAG
CTGACGGCTACNGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCGTGC
ACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAACCTC
GTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGT
GCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAA
CGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCANGTTT
CTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCACCA
CTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACGTTC
ATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAAGTC
GCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCACGT
GCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCGGTA
CGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGA
GCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAATTCC
ACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGTACTACAGCAGTGG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCCACTTCCACGAGGGCATGAGGGCGTGCGCG
TCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCAAGGCCT
CCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCG
CGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACG
GCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAAGAAGGG
CAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGGCCTTGT
GGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCGCCTGAG
TCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGTTCGGAC
AAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:9733..13078- >EsuBft2058_4a-0001 ID=EsuBft2058_4a-0001|Name=EsuBft2058_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2502bp|location=Sequence derived from alignment at Scaffold_372:9733..13078- (Ectocarpus subulatus male Bft15b)
ATGCATAGATGCGGGGAAACTCGCCGGTCGGAAATACGGAAGAAAGCACA
CCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGGAGCGGACGTCA
AGACGGCTGCGAAGAAGAAGGCACGGGAGGGTGACCTATTGTTCGGCACG
TTCAACGTACGCACGCTCGCCTACAGCGGTAGAAATCCCATCGGCCACAA
CGTGATGACGGTCATACAGATCTGTTCCGCGACCGGCTGTGATGTGATAG
GACTTCAGGAGACCCGACGAGAGGGGCAGAGGGGCAACGTTCAATTGCAC
ACGACGGCGATCAAGGAGGCCATGTGCGAGAGTGTGGGCGAGGAAGGTAG
GACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTG
GCCGCACCTGCGGAGTAACTTTCGTGGTGGGGTNNNNNNNNNNNNNNNNN
NNNNTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGG
CGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGTGTGG
GCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAAGGAG
NATGAGGACGCCCCCACGGAAACTGTCCGCACGGCGGCGGGCGGTGATGT
TAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGG
AGGCGAGACGGGTGCTGCGATGCCAAGATTATGGNNCCTACTTCTGGACA
CCGAAAGGTGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGGAAGGA
GAAGTACCGCCTCGAGTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG
TGCACAATGTCTCCGTCAAACGTGTCGACTTCATGGACTCTGACCACAAC
CTCGTGCTTACGACTGTGCCCCTCCCCCCCCGTGTCGCACCCAACCGACG
AGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGGCCTCGAGCGGT
TAACGAAGAACAAACACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAAC
CGCTCTCCGCCAACGGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGA
GCTGACGGCTACGGTCATGTCGGCCGCCGCTGAGACCGCGCCGCTGGCGA
GGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAG
ATCTCCGAAGCGTCCAAAGAGATTAAGGCGGCCCAGCAGCAACTGCGTGG
GGCCTCAAAGAACAGCGCCTTCGAGCATCGCAAGGTGGAGAGCACTGGAA
ACNTCCTACTTCCGGACGCCTACTTCTGGACACCGAAAGGTGGAGTGCAG
CACACATTCCAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGAGTT
CATCCTCATGCGTCAGACGGACCGGCGTTTCGTGCACAATGTCTCCGTCA
AACGTGTCGACTTCATGGACTCTGACCACAACCTCGTGCTTACGACTGTG
CCCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGG
AAGCAGCCGGATCCGTATCGGCCTCGAGCGGTTAACGAAGAACAAACACC
TACGGGTCGCCTTCCAAAACAGGGCCTCCAACCGCTCTCCGCCAACGGCG
CTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACNGTTCA
TCCTCATGCGCACCTGAAGATGATCGACGTCGAAGGTAAGAGGTCGTTCA
CCACTCAGAACATCAAGGACGAGGACGGCATGGTCCTTCGGGACCCCACG
TTCATTCGCCAACGGTGGGCACGGTGGTTACACAAGCTTCTCAACACCAA
GTCGCCGACCGTCGACCTGCATGCGGCTGACAAGGTAAAGCGGTGGTCCA
CGTGCGTGCCAGTTGACGACATCCCATCTCTACTCGAGGTTGAGGAAGCG
GTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGC
TGAGCTGATCAAGCTTTTCCTCGACGGAGATCAAGATCGCCTCCGCGAAT
TCCACGCCATTGTCGTGGACGTGTGGCAGACGGGGGACGGCATGAGGGCG
TGCGCGTCCGAACGGACGATGGGCAGTACTGAATGGTTCGACGTGGGCCA
AGGCCTCCGGCAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCT
TTGCCGCGATGCTCATGGTTACCGTGGCCGAGTTCGACAAGGACCCCAAG
GTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGCACACTGGCAA
GAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGACGGACGTGGAGG
CCTTGTGGGCCATGCTCTACGCTGAAGACGTGGCCATCGTATCGCGCTCG
CCTGAGTCTCGAGAAGATGATGTCGATCATCGTGCGCGTGGCCGGCCTGT
TCGGACAAAGCGGCGGTGGGGGGGAAGAAACGGCGACCGGGCACTGCTGT
AG back to top
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