Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXD3 |
| ProteomeId | EsuBft2058_5 |
| Protein domains | IPR004875 |
| Protein domains | PTHR19303 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | pogo transposable element with krab domain os:mus musculus gn:pogk pe:2 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2158 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.05e-139 |
| EggNOG OGs | KOG3105@1|root,KOG3105@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | POGK |
| KEGG ko | ko:K09228 |
| Description | DNA binding |
| COG category | CH |
| BRITE | ko00000,ko03000 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2158bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGGCTGGAGCAGGTGGAGCAGCTCAGGGAGAAGGTTAGCGCCAATCCCAA
GCTTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCG
ACGCCGAGCAAGCCCTTGTGGACTACATTGACGAGCAGCGCAAGCAGCAC
CACGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGTTGAAGCC
TAACGCCCTTGGCGGCATGTCGGCGAACGCGAAACCGACGGAGGCGCTGG
CTTTCAAGGTCAAGATCAACTCCTGGTACCAACGGTTCCGCAAGCGGAAT
GGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAAAAACTGCCGAAGGG
GTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCG
TAAGGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGAC
GAGAGCCCCATCAAAGGAGAGGATCTGACTTTCGAGCAGCTGGCGTCTGT
GGAGGCGGAGGTTTTCAAGGAACTCGGCAACATGGACCAGACGCCAGTCC
AGCACGAGATGCCGGTGGAGACCACTCTGGAGAAGACCGGTGCGAAGGAT
GCTCGCATCAGCACAGGAGGCAAAGAGAAGGAACGCTTCACGCTCGTTCT
GGCTGTCATGGCGGACGGCAAAAAGGTTTCGCCGCGCATCATCTTCAAGG
GTACGCCGTTCATCCCCCCGGCCGTGAGTGGCAAGGGCAAGAGCACCCTG
CCGCGGAAGAACTCCGTCGCGTGGGAGATCCATCCTGCGAACCGCGCCAA
GCACGACCACCCTGCCAACGGCATGTCCTTCGGCGTGCAGGAGAAGAGCT
GGAGTGACCAGCGGGAGTGCAACGGGTGGATCTCGGGCAGTTGGAAGCTC
CGTCCCAACAACGGCAGCATCGTCCAGCAGCGCCCGTGCATCCTGGTGCT
GGACGACTTCAAGTGCCACAAGGACGAGGGTTACATCGCCGCCCTCAAGA
GAGACGCCAACACCATCGTCATCGTCATCCCAGGCGGGTTGACGCCCTTG
CTCCAACCGCTCGACCGCATGCTCAACAAGCAGATGAAGCGGCTGCTGCG
GGGTAAGTACACCGCCTACAGCGCGTCGGCGGTCGCGGACGCCCGGTCGG
GGAAGCTGAAGCCACCGGAGCGTGGGGTCGTCTCTACGTGGTGCAAGGAA
GCGTGGGAGTCTATCACCCCCGAGACGGTGTCATCCGTACGCAAGGAACG
CTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCT
CCGTCCNCGAGACGGTGAAGACTTGCTTCAAGATCTGCGGTCTCACGCTC
GCGCTCGACGGCAGCGAAGACCACGCCTGGTGCGAGCACAACTTCGGGGA
AGACTACCGCGACCTTCTCGAGGAGCAGTACGCCGTATGACTCGCTGAGT
ACCCCGTCGTGACTCTCCCGTCGCTCAAGCTGCCGAAGGTACCAGGGGGG
TTCGACTCCAACCCCATCACGGCTGCTCAGAAGGAGGTCGAGGGGAAGCT
GCCCTGAGTCGCTGATGAGAGCGACAGCGAGGTGGAGGTCTTGGAGGGCG
ACAGCGACGTGGAAGTCGTGGAGGGGCAGGGGGGCGGGGGCGCCGAAGGA
GAAGTAGTCGAACTTTGAATCATAGTTCTTTGAGCTTGCCATGGAGATTG
GATGTTTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTTAACCCGC
CTGGGAAGGACAGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGTTTGTTG
TTATTATTTTCTTCGTTTTTGGTTTCATCTGCGTTTAGAATTATGGAGTG
GATGCCGTTTGCCGATTTGCCGATCTTGATTCTTCAGAACGAAAAGAAGA
GAACAAAGAGTACAAATACCACATTATTGAACATCGTCATGGTGCCAAGG
GCAGCAGTAGCAGTGGAGCACGCGATTCAAGCTCCCACAGTATCCGGAAT
TTCCAGCACAAGATGCTGGTGAAAGGGTATCACTTCCCGCCAAACCTCAC
CGCACGTATCGGCGTCTCCGCACAGTGTGTGGAGACGACGATACCTGTGC
GATAATCTAGCAAATCATTCGGAACCCGCTTCTTTTCCGCATACCCTGCG
CCAAGACC back to topprotein sequence of EsuBft2058_5a-0001 >EsuBft2058_5 ID=EsuBft2058_5|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=421bp
MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRT
SVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGED
LTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK
EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAW
EIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIV
QQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRML
NKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPE
TVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH
AWCEHNFGEDYRDLLEEQYAV back to topmRNA from alignment at Scaffold_372:5960..8523+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2564bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)
TGGCTGGAGCAGGTGGAGCAGCTCAGGGAGAAGGTTAGCGCCAATCCCAA
GCTTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCG
ACGCCGAGCAAGCCCTTGTGGACTACATTGACGAGCAGCGCAAGCAGCAC
CACGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCGAGTTGAAGCC
TAACGCCCTTGGCGGCATGTCGGCGAACGCGAAACCGACGGAGGCGCTGG
CTTTCAAGGTCAAGATCAACTCCTGGTACCAACGGTTCCGCAAGCGGAAT
GGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAAAAACTGCCGAAGGG
GTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCG
TAAGGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCTGAC
GAGAGCCCCATCAAAGGAGAGGATCTGACTTTCGAGCAGCTGGCGTCTGT
GGAGGCGGAGGTTTTCAAGGAACTCGGCAACATGGACCAGACGCCAGTCC
AGCACGAGATGCCGGTGGAGACCACTCTGGAGAAGACCGGTGCGAAGGAT
GCTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTCAAAATT
TTGTGTGGTGTGCGGATTTTTTGTCATTGGACAATTTTTAAGACACATGT
TTTTTTTGCGTGCCGGTACACGGTGCGATGTAGCTCTATCGGTAGACACA
GGAGGGTTGCTACCTTTTTCTGTGGGATTATTCTACACTTCCTTTTTCAT
TGCATCCAAACTATCAACCAACTTAGTTTTCGAAACGTCCGGTACCGTTT
GCATCCATTGCATCAACCACACACCACTGTCCTCGCAGAGATATTCAACA
CCTACTCCCTCCCCCCCCTCCCCTCGCGTTGATTTTTCCCCCCTCCCCTC
AGGCAAAGAGAAGGAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACG
GCAAAAAGGTTTCGCCGCGCATCATCTTCAAGGGTACGCCGTTCATCCCC
CCGGCCGTGAGTGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGT
CGCGTGGGAGATCCATCCTGCGAACCGCGCCAAGCACGACCACCCTGCCA
ACGGCATGTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAG
TGCAACGGGTGGATCTCGGGCAGTTGGAAGCTCCGTCCCAACAACGGCAG
CATCGTCCAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCC
ACAAGGACGAGGGTTACATCGCCGCCCTCAAGAGAGACGCCAACACCATC
GTCATCGTCATCCCAGGCGGGTTGACGCCCTTGCTCCAACCGCTCGACCG
CATGCTCAACAAGCAGATGAAGCGGCTGCTGCGGGGTAAGTACACCGCCT
ACAGCGCGTCGGCGGTCGCGGACGCCCGGTCGGGGAAGCTGAAGCCACCG
GAGCGTGGGGTCGTCTCTACGTGGTGCAAGGAAGCGTGGGAGTCTATCAC
CCCCGAGACGGTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAA
CACCCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAGTATCTC
ACAGCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGG
CGTGCTCCGTCCNCGAGACGGTGAAGACTTGCTTCAAGATCTGCGGTCTC
ACGCTCGCGCTCGACGGCAGCGAAGACCACGCCTGGTGCGAGCACAACTT
CGGGGAAGACTACCGCGACCTTCTCGAGGAGCAGTACGCCGTATGACTCG
CTGAGTACCCCGTCGTGACTCTCCCGTCGCTCAAGCTGCCGAAGGTACCA
GGGGGGTTCGACTCCAACCCCATCACGGCTGCTCAGAAGGAGGTCGAGGG
GAAGCTGCCCTGAGTCGCTGATGAGAGCGACAGCGAGGTGGAGGTCTTGG
AGGGCGACAGCGACGTGGAAGTCGTGGAGGGGCAGGGGGGCGGGGGCGCC
GAAGGAGAAGTAGTCGAACTTTGAATCATAGTTCTTTGAGCTTGCCATGG
AGATTGGATGTTTTTGCGATGGTAGGGGCGCGGGCACGAAGTAGAGTTTA
ACCCGCCTGGGAAGGACAGTAGTAGGACGTTGGTAGCTCGTAGTGGTAGT
TTGTTGTTATTATTTTCTTCGTTTTTGGTTTCATCTGCGTTTAGAATTAT
GGAGTGGATGCCGTTTGCCGATTTGCCGATCTTGATTCTTCAGAACGAAA
AGAAGAGAACAAAGAGTACAAATACCACATTATTGAACATCGTCATGGTG
CCAAGGGCAGCAGTAGCAGTGGAGCACGCGATTCAAGCTCCCACAGTATC
CGGAATTTCCAGCACAAGATGCTGGTGAAAGGGTATCACTTCCCGCCAAA
CCTCACCGCACGTATCGGCGTCTCCGCACAGTGTGTGGAGACGACGATAC
CTGTGCGATAATCTAGCAAATCATTCGGAACCCGCTTCTTTTCCGCATAC
CCTGCGCCAAGACC back to topCoding sequence (CDS) from alignment at Scaffold_372:5960..8523+ >EsuBft2058_5a-0001 ID=EsuBft2058_5a-0001|Name=EsuBft2058_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1266bp|location=Sequence derived from alignment at Scaffold_372:5960..8523+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCGAGTTGAAGCCTAACGCCCTTGGCGGCATGTCGGC
GAACGCGAAACCGACGGAGGCGCTGGCTTTCAAGGTCAAGATCAACTCCT
GGTACCAACGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACC
AGCGTGGGCCAAAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAGGCGCGCCGGTGAGATCTACG
CTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCCATCAAAGGAGAGGAT
CTGACTTTCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCAAGGAACT
CGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCGGTGGAGACCA
CTCTGGAGAAGACCGGTGCGAAGGATGCTCGCATCAGCACAGGAGGCAAA
GAGAAGGAACGCTTCACGCTCGTTCTGGCTGTCATGGCGGACGGCAAAAA
GGTTTCGCCGCGCATCATCTTCAAGGGTACGCCGTTCATCCCCCCGGCCG
TGAGTGGCAAGGGCAAGAGCACCCTGCCGCGGAAGAACTCCGTCGCGTGG
GAGATCCATCCTGCGAACCGCGCCAAGCACGACCACCCTGCCAACGGCAT
GTCCTTCGGCGTGCAGGAGAAGAGCTGGAGTGACCAGCGGGAGTGCAACG
GGTGGATCTCGGGCAGTTGGAAGCTCCGTCCCAACAACGGCAGCATCGTC
CAGCAGCGCCCGTGCATCCTGGTGCTGGACGACTTCAAGTGCCACAAGGA
CGAGGGTTACATCGCCGCCCTCAAGAGAGACGCCAACACCATCGTCATCG
TCATCCCAGGCGGGTTGACGCCCTTGCTCCAACCGCTCGACCGCATGCTC
AACAAGCAGATGAAGCGGCTGCTGCGGGGTAAGTACACCGCCTACAGCGC
GTCGGCGGTCGCGGACGCCCGGTCGGGGAAGCTGAAGCCACCGGAGCGTG
GGGTCGTCTCTACGTGGTGCAAGGAAGCGTGGGAGTCTATCACCCCCGAG
ACGGTGTCATCCGTACGCAAGGAACGCTTCGCGCTTGGTGATGTGAGAGC
CTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCNCGAGACGGTGAAGACTT
GCTTCAAGATCTGCGGTCTCACGCTCGCGCTCGACGGCAGCGAAGACCAC
GCCTGGTGCGAGCACAACTTCGGGGAAGACTACCGCGACCTTCTCGAGGA
GCAGTACGCCGTATGA back to top
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