EsuBft3605_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft3605_2a-0001
Unique NameEsuBft3605_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:859297..864618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft3605_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length252
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2aEsuBft3605_2aEctocarpus subulatus male Bft15bgeneScaffold_370 859297..864618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2a-0001EsuBft3605_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 862075..863777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2a-0001-exonagat-exon-15114Ectocarpus subulatus male Bft15bexonScaffold_370 859297..859573 -
EsuBft3605_2a-0001-exonEsuBft3605_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 860375..861186 -
EsuBft3605_2a-0001-exonagat-exon-15115Ectocarpus subulatus male Bft15bexonScaffold_370 861539..862096 -
EsuBft3605_2a-0001-exonagat-exon-15113Ectocarpus subulatus male Bft15bexonScaffold_370 863737..864618 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2a-0001-exonagat-three_prime_utr-13943Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 859297..859573 -
EsuBft3605_2a-0001-exonagat-three_prime_utr-13944Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 860375..861186 -
EsuBft3605_2a-0001-exonagat-three_prime_utr-13945Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_370 861539..862074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2a-0001-cdsEsuBft3605_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 862075..862096 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft3605_2a-0001-exonagat-five_prime_utr-8858Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_370 863778..864618 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft3605_2a-0001 ID=EsuBft3605_2a-0001|Name=EsuBft3605_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2529bp|location=Sequence derived from alignment at Scaffold_370:859297..864618- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCCCCCCTATTTCAAAAGCTCACTCACAATTCCATCAGCCCCTGCC
GCTTTTCTATTCTTGAGTTTCCCTACACAGTCCTTTACCTCTTCTCGTGT
GAACTTTCCCTGCAACCCGCCTACATCACTACATTCCCTCCGAGATCTTT
CAACGTGTTCCTCTGCTCACGAGTTGATTCCCTTCTCAAACTCCGAGTCG
AAGTTGTCGTTGGTGGTGGGTGTCCCCAAGTTTGCGGTAGTGCTCTACTA
GTACTTCCCGCTTTCCTTTAGAACTGCTTACCATCTTACCCTCGGCAGAT
CGTAGTGTCGCCATTCCCGTGGCTCCCCCTCTTTTCTTGCCCACTATCCC
TTGAATTCCTACCCACATTTGCTTCATCCCCCCCTCAAAATCTTCGTTAG
TCTTTTGGACTACTTCCTCCCACAACGCTTTCTTGTTCTTCACCACCAAC
TCCTTCACTCTCCTTCTATTTTCAACATACTCCTCCCATCCTGCATCGGT
TTTCCCTGCCGCATATTTTGCGTGTGACTCTCTGCGCACTCGAAGTGCTT
GCTTGATTTCTTCGTCCCACCACGTCGTCACTGCTCTCTTACAAACTATC
AACTTTCTACCGAGAACTCTGCTTGTCGTTGTGTTTACCAGCTTTTCCCA
CCCTTCTATGATTCTAGATCCGGCCTGGTCCCGACCTTTGGCGTCCTTCG
GTGTGTCCATTCATTGCCTCTATCAACTCCGAGAGGTTCTTGTCGTTTAT
AGCCATCTCTTCTTGGAACTCTATCCTCGTTTCTTCTACTTCTAGCTTAC
CTATTCTCCATCTGTACATTTTCCTGCGTCGCCTACTCTGTATGACTCTC
GTCTGTTGTAGGGCTGTCCACACCAACGCATGTGCCTCCAACATGGGCTC
ATAGCCTGGAGCCAAGTTCAACACCCTTAGCACAAGTACCCCAAGTTTGT
TTGTGCTAGGCGATCTGCATGGTAACCAACCCAAGCTTCCCACGACCGTA
TCTTCTCTCTACTTGCCCCAGCTGCTGTACTGGGTACTTTCCTCCGGGGA
GGTCATTTTCCCCATGTAGGGTTCAAGGGTGGCTTGCATAACAGAAGGTC
TCACTCACACAACATCGATGTCCGTCTCTTCCTTGATTTTTATGACATAC
AAACATAAAAATCTCCTCCTCGTAGACGCCAGAGAGCACTATTATCTTCC
CTCATGGCGGTCTAAGTCGACCCAGGGTTGATAAATGAGTTACGGTCATC
AACGTTTGTACGGTACACCATGGGTAGCTACCCCACTAACGCTCCCGAGT
AGACCTTCGCTGCCGAAAGCTTGACCAACAATCCCCCCAAACTTTGTGCC
GGCGTCTAGAACCTTCAAACTTCAAGATATCTACGTACCGCTTGGTGCTC
CTTCTCTTTTGGGTCATTTGGTCGGTCATTTGAAAACAAGTGAGTATGTT
AGGTCTGACATTTCGTCTTGCATTATCCACCCCTCTCCTTGCGGAGAATT
CAGGATAATAGTGTCTGACCAGATTCCCACCGCCCCATGGGAACCGGTAA
TGTATTACGGTTATCTCACCACGAGTCCCCAACCTTCATGTGCATCGCAC
AGTTGACCAAAAGGATTGCTGTGTCTATATTTATGCTTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGTTAGTTCAGCT
CTTTCATGTCTGGCTTGGCGGGTTTGTGTTACGGTATGGGAAAAATAAAA
AAGTCGGTTAGTTCAGTTTTCCATGTCTGGCTCGTCAGGTTTGCGTTGCG
GTATGGGAAATAAAAAGTCGGCTAGTTCAGTTTTTCCATGTCTAGCTTGT
CAGGTTTATGTAACGGTATGGGAAAATAAAAGGTCGGTTAGTTAAGCTCT
TTCATGTCTGGCTTGGCGGGTTTGTGTTACGGTATGGGAAAATAAAAAGT
TGGTTAGTTCAGTTATTTCATGTCTAGGGTCTGGTGGTTTGTTTTACAGC
GTCGGTGCCACGCTACGGTGATAGGGGGGGTTCTACATCACTCGGACGCT
TGCCAATGGGGGATTCACTTAGTTGGCTCGTGGGACGCCAGAGCCGTCTC
GAAGGCGTCTGGCGAGTTGAGCATGAGGTCCACCGTATTCGATATACTCG
TAGCATAGCATGGGGGGGGTATATTGCGTATACATATGCGGGATTTGCAG
TGACGAACTTCGGAGGAACAAGAAGTTTCTTTATGTTTTCCTTGGGAGTG
TGGGCCTTGGGATGGAATTTTCAAGCAAAAAAGAAGATGAGCAGGCTAAG
TTTTTATTTTTCGATCGAACATGGTAGCTATGTTTGCGCAGGAAGGAGTG
CGTGGTGTGGTACTGACTGAAAAAAAAAATTCAGTCGGAAAAGAAGGAGT
GAGCATGGAGGAGCTGCGTAGGGTGCATTCGAGTGACAGCGTAGAAAAGG
CAATCACGGCGTGGAACCTGCTGATCACGTCTGTAACGTACATGCCTATC
CTTACCCAGATCATCGCTGATGGTAGTCC
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protein sequence of EsuBft3605_2a-0001

>EsuBft3605_2 ID=EsuBft3605_2|Name=EsuBft3605_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=20bp
MTLVCCRAVHTNACASNMGS
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mRNA from alignment at Scaffold_370:859297..864618-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft3605_2a-0001 ID=EsuBft3605_2a-0001|Name=EsuBft3605_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5322bp|location=Sequence derived from alignment at Scaffold_370:859297..864618- (Ectocarpus subulatus male Bft15b)
CCCCCCCCCCCTATTTCAAAAGCTCACTCACAATTCCATCAGCCCCTGCC
GCTTTTCTATTCTTGAGTTTCCCTACACAGTCCTTTACCTCTTCTCGTGT
GAACTTTCCCTGCAACCCGCCTACATCACTACATTCCCTCCGAGATCTTT
CAACGTGTTCCTCTGCTCACGAGTTGATTCCCTTCTCAAACTCCGAGTCG
AAGTTGTCGTTGGTGGTGGGTGTCCCCAAGTTTGCGGTAGTGCTCTACTA
GTACTTCCCGCTTTCCTTTAGAACTGCTTACCATCTTACCCTCGGCAGAT
CGTAGTGTCGCCATTCCCGTGGCTCCCCCTCTTTTCTTGCCCACTATCCC
TTGAATTCCTACCCACATTTGCTTCATCCCCCCCTCAAAATCTTCGTTAG
TCTTTTGGACTACTTCCTCCCACAACGCTTTCTTGTTCTTCACCACCAAC
TCCTTCACTCTCCTTCTATTTTCAACATACTCCTCCCATCCTGCATCGGT
TTTCCCTGCCGCATATTTTGCGTGTGACTCTCTGCGCACTCGAAGTGCTT
GCTTGATTTCTTCGTCCCACCACGTCGTCACTGCTCTCTTACAAACTATC
AACTTTCTACCGAGAACTCTGCTTGTCGTTGTGTTTACCAGCTTTTCCCA
CCCTTCTATGATTCTAGATCCGGCCTGGTCCCGACCTTTGGCGTCCTTCG
GTGTGTCCATTCATTGCCTCTATCAACTCCGAGAGGTTCTTGTCGTTTAT
AGCCATCTCTTCTTGGAACTCTATCCTCGTTTCTTCTACTTCTAGCTTAC
CTATTCTCCATCTGTACATTTTCCTGCGTCGCCTACTCTGTATGACTCTC
GTCTGTTGTAGGGCTGTCCACACCAACGCATGGTCTGTAGTGCCTACATC
CGTTGTGCATACTCGTACTTCCGTCTCTTTCCCCCCATTCTCTACGACTA
TGTAGTCAAGGATGGAGCGTTCTCCTTTTTTTAAACACTGCCTAGTCCAT
TCCGGTTCTGTCTTTCGTACTCTACCGTTCAACACCTTCATCTCGCTACT
GTCAAGGAACCTCAGCATTTCTTCCCCGTTTTTGTTCGTGGCTCCCTCCC
CGTATTGCCCGATGGCTCCGTGTGAGTTCGTGGTTCGCCCGATTCTTGAA
TTGAAGTCCCCAACTAAAACTACTTCTCCCTTTCTCTTGAAGGTTTGTAC
ATCCGCTGCTACCTCCTCGAACCCTATCTTGGTGTCCTTCACGGNCCCGA
TGGCTCCGTGTGAGTTCGTGGTTCGCCCGATTCTTGAATTGAAGTTCCCA
ACTAAAACTACTTCTCCCTTTCTCTTGAAGGTTTGTACATCCGCTGCTAC
CTCCTCGAACCCTATCTTGATGTCCTTCACGGTATTCTTCGACTCTGGTG
GTATATATACATTTCCTACGAACAAGTCCTTCCTTCCCCGTTCCCTGGTA
CCCTTATCCACAATGCTTTCGTTGAATTTGGTGTCGCTGATCACCTCAAT
TACGTCGCAAATGTGCTCCTTGACTAAGAATCCAACTCCCCCCTCCCCTC
CTCGTTTTACCTATCCATGTGTAGCTTCCCACTTCTTTTCCTATTTCTCC
CCCGTCTTTCTCCCACGACTCTTGGACTCCGACTATGTCCAGGTCTTTTT
CGGCTGCTCGCTCGGCAATTTCGAGTCTTTTACGCTCATGTGTGGCAAAC
CCGCATACATTCCAAGACCCTAGTCTGATTTCCTTACTCCTACTTTCTAC
TTTCCTGTGCCTTTCAGGATTCCGTCTGTCCCTCGTTCGCCTTCCCTTCT
GCCTTATCCTTTCGCTGCTCCCCCCTTCCCCTACTTTTGCTTGTTTTCCC
TTTCATCCTTTCGAACCTCCTGCCCCCCTTTGTTTTCAGCCAGCCTTGGG
CTACGCCTTACTTCCTGGATCCTATTTGCTATGCACACCCTCCAACCTAG
TCTCCTCACCCACGCCGACATCTTCTCTACTTCCAGTCTTTCCCATTCTG
CGCTTACTCTCCTTCCAAACGTGATTCTAAAGTGGTTTCCTTCCCTTCCT
ACCCCCCCGCGTGCGAAGCAATATAATCCTACTTCTTCACATATACTCTT
GAACTCCAACCTTGTCATGTCGTTATTGACCCCAAATATCAACACTACCA
GTACTGCACCTTTCCATTTTCTCCTTCTCCACCCTTTGTGCCTTGTCGTC
TCCCTCCTTATCTCTTTGGAGACTATCTCGTTGTTTTGGTATGAAGTGGA
TGCTTTCAAATTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCTTGTCGTCTCCCTCCTTATCTCTTTCGA
GACTATCTCGTTGTTTTTGTTTGAAGTGGGATGCTTTCAAATTACTGGGA
CTTCCCAATCCTAGTACTTGTTGAGGGTCTGGTGTCTTTCAATTCTTTTG
CCGGCTCACCGACACTAAAAAGTGCCTCCAACATGGGCTCATAGCCTGGA
GCCAAGTTCAACACCCTTAGCACAAGTACCCCAAGTTTGTTTGTGCTAGG
CGATCTGCATGGTAACCAACCCAAGCTTCCCACGACCGTATCTTCTCTCT
ACTTGCCCCAGCTGCTGTACTGGGTACTTTCCTCCGGGGAGGTCATTTTC
CCCATGTAGGGTTCAAGGGTGGCTTGCATAACAGAAGGTCTCACTCACAC
AACATCGATGTCCGTCTCTTCCTTGATTTTTATGACATACAAACATAAAA
ATCTCCTCCTCGTAGACGCCAGAGAGCACTATTATCTTCCCTCATGGCGG
TCTAAGTCGACCCAGGGTTGATAAATGAGTTACGGTCATCAACGTTTGTA
CGGTACACCATGGGTAGCTACCCCACTAACGCTCCCGAGTAGACCTTCGC
TGCCGAAAGCTTGACCAACAATCCCCCCAAACTTTGTGCCGGCGTCTAGA
ACCTTCAAACTTCAAGATATCTACGTACCGCTTGGTGCTCCTTCTCTTTT
GGGTCATTTGGTCGGTCATTTGAAAACAAGGTTCTTGAGTGAGTATGTTA
GGTCTGACATTTCGTCTTGCATTATCCACCCCTCTCCTTGCGGAGAATTC
AGGATAATAGTGTCTGACCAGATTCCCACCGCCCCATGGGAACCGGTAAT
GTATTACGGTTATCTCACCACGAGTCCCCAACCTTCATGTGCATCGCACA
GTTGACCAAAAGGATTGCTGTGTCTATATTTATGCTTCGTTTCCGTTTTC
GTGTTGGTGTGTAAGGTGGCCAATAACCTTCTACTCTTGCTTACTTTTGC
GTTTTCAACTGTGAAAAGGAAAAAAAAAAAAATGGAAAGCGTCTGGAAAT
GTGNTCGGTCATTTGAAAACAAGGTTCTTGAGTGAGTATGTTAGGTCTGA
CATTTCGTCTTGCATTATCCACCCCTCTCCTTGCGGAGAATTCAGGATAA
TAGTGTCTGACCAGATTCCCACCGCCCCATGGGAACCGGTAATGTATTAC
GGTTATCTCACCACGAGTCCCCAACCTTCATGTGCATCGCACAGTTGACC
AAAAGGATTGCTGTGTCTATATTTATGCTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGTTAGTTCAGCTCTTTCATG
TCTGGCTTGGCGGGTTTGTGTTACGGTATGGGAAAAATAAAAAAGTCGGT
TAGTTCAGTTTTCCATGTCTGGCTCGTCAGGTTTGCGTTGCGGTATGGGA
AATAAAAAGTCGGCTAGTTCAGTTTTTCCATGTCTAGCTTGTCAGGTTTA
TGTAACGGTATGGGAAAATAAAAGGTCGGTTAGTTAAGCTCTTTCATGTC
TGGCTTGGCGGGTTTGTGTTACGGTATGGGAAAATAAAAAGTTGGTTAGT
TCAGTTATTTCATGTCTAGGGTCTGGTGGTTTGTTTTACAGCGTCGGTGC
CACGCTACGGTGATAGGGGGGGTTCTACATCACTCGGACGCTTGCCAATG
GGGGATTCACTTAGTTGGCTCGTGGGACGCCAGAGCCGTCTCGAAGGCGT
CTGGCGAGTTGAGCATGAGGTCCACCGTATTCGATATACTCGTAGCATAG
CATGGGGGGGGTATATTGCGTATACATATGCGGGATTTGCAGTGACGAAC
TTCGGAGGAACAAGAAGTTTCTTTATGTTTTCCTTGGGAGTGTGGTAAAT
TGGTGGACATTCATGGAGATTCGTTTTGGGTGTTTAAGCGTTATGCGTGA
CTTGATGCCGTGATGGAATGACGAGCTCAAGCACGCCCCCGATGAATAAA
ACACGTTTTTCCACACGTCTGGACGACTTTACCTACTCAAACGNCCTTGG
GAGTGTGGTAGATTGGTGGACATTCATGGAGATTCGTTTTGGGTGTTTAA
GCGTTATGCGTGACTTGATGCCGTGATGGAATGACGAGCTCAAGCACGCC
CCCGATGAATAAAACACGTTTTTCCACACGTCTGGACGACTTTACCTACT
CAAACGGCCCGTCATGGCCGAGCTGCTCTACACTCCCATCACACACAACT
GAGCCACCCGAATTTCGATCACGCTGCTAGCGTATGACACGTCGTCTACG
AGATTCGCGTCGAGCTTAGGCTGGAGTATCGCTTTGCGGCGATCAGCAGC
TGTCACTGATGTCCAGCGCCGACCAAGAACGAGGCGCCCGTCACGCAGAA
GACGAGGACGCCCGCATCAATGAGTTGGTGGAGATGAGGGTACAACAATG
ACTGGCCGACATGAGGTGGCAACAAGACGAGGAGGAGCAGAGGACAGAGA
ACGTCCGGACCGGAAGCGAGCACGAGACACGCCACCAGCAACAAGCGGGG
CGGCCATCGGCGAACCCGGCCGTAGATGACATCGCCCGCACTCTCGCAGA
CGCCATGTCCAGCCGAATGCAGATATCACCACGGGACGTCGGTAGAGTAC
CCAGTACAGGAGGAAGTATTCGCATGACAGAGTTTAAGCGCCTAGGGCCT
TGGGATGGAATTTTCAAGCAAAAAAGAAGATGAGCAGGCTAAGTTTTTAT
TTTTCGATCGAACATGGTAGCTATGTTTGCGCAGGAAGGAGTGCGTGGTG
TGGTACTGACTGAAAAAAAAAATTCAGTCGGAAAAGAAGGAGTGAGCATG
GAGGAGCTGCGTAGGGTGCATTCGAGTGACAGCGTAGAAAAGGCAATCAC
GGCGTGGAACCTGCTGATCACGTCTGTAACGTACATGCCTATCCTTACCC
AGATCATCGCTGATGGTAGTCC
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Coding sequence (CDS) from alignment at Scaffold_370:859297..864618-

>EsuBft3605_2a-0001 ID=EsuBft3605_2a-0001|Name=EsuBft3605_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=63bp|location=Sequence derived from alignment at Scaffold_370:859297..864618- (Ectocarpus subulatus male Bft15b)
ATGACTCTCGTCTGTTGTAGGGCTGTCCACACCAACGCATGTGCCTCCAA
CATGGGCTCATAG
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