Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1008_2 |
| Protein domains | IPR001878 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 197 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0008270 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1977bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTA
CCAATGTGTGCGGTACACTTCTGCTCTGTTCAGCGGCAAATCGAAAGATT
TCAACGAATGATTTCCGCATGGCAGCTAATGGGGCAAACCTGTTGGAACA
ATTTGAAGAGAGCGGGAGCTTGAAGATCCCCGTCAACAGCGGAAAGAGCA
AGTTTTCGCTGTCACGGCAGTACCGGAGCGAGCAAGTAAAGCACGCATTC
CACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAAT
CATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAAGACCA
TACACGACCCTGAATCATCTGTACAGCCGTCTGAGAACCTCAAGTCCCTG
ACGTCGACCAAGATCTCTAGAGGTGAAAACCGCCAAAACGCCCGAAATGA
GGTGCTCCAAACCGCAAAGTCTTTGTCCGAGGAAGGACTAACTGTCAACG
AAACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCC
ATGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCCGACCGGTGT
GCTAAAGGAAGTAATGATCGAATACATGGCGATCAAGGACAAGCTGGAGC
AGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGAC
GGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCG
TGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAG
GTGGTCGCGGCGGCGGCGGCGGCGGTCGCGGCGGCCGCTCAGGCGGCTCC
GGAGGAATCGGGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGG
CGGTGGCGGGCACTATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATC
GTGGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCG
TGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGAC
GGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGGGAGCGACGTGGACT
CCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGT
GGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGC
GGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAG
ACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGA
GGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGT
CCTACAGACGGAAGATGGTGGAGTACCCGCACCAGTACTGAATGCTGCCT
ATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCATTGGCGGAG
GAGGGCCGCACGTATTCGGGGATGAATGGGGGCCTCACGCTGACCACGAA
TGCCGGGGTGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCAAC
GAGGCTATCAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN back to topprotein sequence of EsuBft1008_2a-0001 >EsuBft1008_2 ID=EsuBft1008_2|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=639bp
MSGRKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDT
MKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAPWTGSAQDGRYLR
EPPLLTTKIIVVPWEMVVLLLALDTEPQPQRRGTNVCGTLLLCSAANRKI
STNDFRMAANGANLLEQFEESGSLKIPVNSGKSKFSLSRQYRSEQVKHAF
HAWNFLSHALKEKDRKIMKRAETPQGALRELKTIHDPESSVQPSENLKSL
TSTKISRGENRQNARNEVLQTAKSLSEEGLTVNETFVLHLFLDALSDEYA
MTKHNLRHAKELTPTGVLKEVMIEYMAIKDKLEQGKGKGAKGAEQAYFAD
GEGRRERYSSRSQGQGRGRGGGRGRSSSRGRGGGGRGGGGGGRGGRSGGS
GGIGESKGSSSGGADGGGGGHYKFPGRCFRCGHRGHQAIGCTTNEKDFVP
WCARCEGWGHTKEKCATEEAVLAQVVEHGSDVDSVEDQAFCAVAVPPGEC
GTVGEVGLVGVVEQGQAVYVADTAATCSMFRCADNFVNYRERSGWVKGIG
GDKAPVPLLGYGDVTLVLQTEDGGVPAPVLNAAYVPEAPYNLLSLSSLAE
EGRTYSGMNGGLTLTTNAGVEVWFPRTGKLLTQRGYQIX back to topmRNA from alignment at Scaffold_370:726775..728824+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2050bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTCTGGCCCGTCAGGGCGACACAGCGGCGAAGCAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACAACCAAGATT
ATAGTAGTGCCATGGGAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAATGTGTGCGGTACACTTCTGCTCT
GTTCAGCGGCAAATCGAAAGATTTCAACGAATGATTTCCGCATGGCAGCT
AATGGGGCAAACCTGTTGGAACAATTTGAAGAGAGCGGGAGCTTGAAGAT
CCCCGTCAACAGCGGAAAGAGCAAGTTTTCGCTGTCACGGCAGTACCGGA
GCGAGCAAGTAAAGCACGCATTCCACGCGTGGAACTTCCTGTCTCACGCG
TTGAAAGAAAAAGATCGGAAAATCATGAAGAGGGCAGAGACGCCCCAGGG
AGCTCTTCGTGAGCTCAAGACCATACACGACCCTGAATCATCTGTACAGC
CGTCTGAGAACCTCAAGTCCCTGACGTCGACCAAGATCTCTAGAGGTGAA
AACCGCCAAAACGCCCGAAATGAGGTGCTCCAAACCGCAAAGTCTTTGTC
CGAGGAAGGACTAACTGTCAACGAAACGTTCGTCCTTCACCTCTTCCTGG
ATGCCCTTTCGGACGAGTATGCCATGACAAAGCACAACCTGCGACACGCG
AAGGAGTTGACGCCGACCGGTGTGCTAAAGGAAGTAATGATCGAATACAT
GGCGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCGAAGGGCG
CAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCGGTACTCA
AGTAGGAGTCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCCGTGGCCGCAG
CAGCAGTCGTGGCCGCGGCGGAGGTGGTCGCGGCGGCGGCGGCGGCGGTC
GCGGCGGCCGCTCAGGCGGCTCCGGAGGAATCGGGGAGAGCAAGGGAAGC
AGCAGTGGAGGCGCCGATGGCGGCGGTGGCGGGCACTATAAGTTCCCGGG
CCGGTGCTTTAGGTGTGGACATCGTGGACATCAAGCGATCGGCTGCACTA
CCAACGAGAAGGACTTCGTGCCGTGGTGTGCGCGCTGCGAGGGGTGGGGC
CACACCAAAGAAAAGTGCGCGACGGAGGAGGCCGTCCTAGCGCAAGTGGT
GGAGCATGGGAGCGACGTGGACTCCGTGGAAGACCAGGCGTTTTGTGCCG
TGGCAGTCCCCCCAGGCGAGTGTGGTACCGTTGGTGAAGTAGGTCTAGTG
GGGGTTGTGGAACAAGGCCAGGCGGTGTACGTGGCCGACACAGCGGCCAC
GTGCTCCATGTTCCGATGTGCAGACAACTTCGTGAACTACCGTGAGCGTA
GCGGTTGGGTGAAGGGGATCGGAGGCGACAAGGCCCCCGTTCCTCTTCTA
GGATACGGAGATGTGACCTTAGTCCTACAGACGGAAGATGGTGGAGTACC
CGCACCAGTACTGAATGCTGCCTATGTACCAGAGGCCCCCTACAACCTCC
TCTCGCTGTCTTCATTGGCGGAGGAGGGCCGCACGTATTCGGGGATGAAT
GGGGGCCTCACGCTGACCACGAATGCCGGGGTGGAGGTGTGGTTCCCCCG
GACTGGAAAGCTGCTGACCCAACGAGGCTATCAAATANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
back to topCoding sequence (CDS) from alignment at Scaffold_370:726775..728824+ >EsuBft1008_2a-0001 ID=EsuBft1008_2a-0001|Name=EsuBft1008_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1917bp|location=Sequence derived from alignment at Scaffold_370:726775..728824+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTCGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
GCTCGCTGACGGATCAGATGAGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGGCAAGCAAGAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCGCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGGAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTCCGCTGCTCACAACCAAGATTATAGTAGTGCCATGGGAGATGGT
GGTGCTGCTGTTGGCTTTGGATACGGAGCCACAACCCCAGCGACGGGGTA
CCAATGTGTGCGGTACACTTCTGCTCTGTTCAGCGGCAAATCGAAAGATT
TCAACGAATGATTTCCGCATGGCAGCTAATGGGGCAAACCTGTTGGAACA
ATTTGAAGAGAGCGGGAGCTTGAAGATCCCCGTCAACAGCGGAAAGAGCA
AGTTTTCGCTGTCACGGCAGTACCGGAGCGAGCAAGTAAAGCACGCATTC
CACGCGTGGAACTTCCTGTCTCACGCGTTGAAAGAAAAAGATCGGAAAAT
CATGAAGAGGGCAGAGACGCCCCAGGGAGCTCTTCGTGAGCTCAAGACCA
TACACGACCCTGAATCATCTGTACAGCCGTCTGAGAACCTCAAGTCCCTG
ACGTCGACCAAGATCTCTAGAGGTGAAAACCGCCAAAACGCCCGAAATGA
GGTGCTCCAAACCGCAAAGTCTTTGTCCGAGGAAGGACTAACTGTCAACG
AAACGTTCGTCCTTCACCTCTTCCTGGATGCCCTTTCGGACGAGTATGCC
ATGACAAAGCACAACCTGCGACACGCGAAGGAGTTGACGCCGACCGGTGT
GCTAAAGGAAGTAATGATCGAATACATGGCGATCAAGGACAAGCTGGAGC
AGGGGAAAGGAAAAGGGGCGAAGGGCGCAGAGCAAGCGTACTTCGCCGAC
GGTGAGGGCCGCAGGGAGCGGTACTCAAGTAGGAGTCAGGGGCAAGGTCG
TGGTCGTGGCGGCGGCCGTGGCCGCAGCAGCAGTCGTGGCCGCGGCGGAG
GTGGTCGCGGCGGCGGCGGCGGCGGTCGCGGCGGCCGCTCAGGCGGCTCC
GGAGGAATCGGGGAGAGCAAGGGAAGCAGCAGTGGAGGCGCCGATGGCGG
CGGTGGCGGGCACTATAAGTTCCCGGGCCGGTGCTTTAGGTGTGGACATC
GTGGACATCAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCG
TGGTGTGCGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGAC
GGAGGAGGCCGTCCTAGCGCAAGTGGTGGAGCATGGGAGCGACGTGGACT
CCGTGGAAGACCAGGCGTTTTGTGCCGTGGCAGTCCCCCCAGGCGAGTGT
GGTACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGC
GGTGTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAG
ACAACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGA
GGCGACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGT
CCTACAGACGGAAGATGGTGGAGTACCCGCACCAGTACTGAATGCTGCCT
ATGTACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCATTGGCGGAG
GAGGGCCGCACGTATTCGGGGATGAATGGGGGCCTCACGCTGACCACGAA
TGCCGGGGTGGAGGTGTGGTTCCCCCGGACTGGAAAGCTGCTGACCCAAC
GAGGCTATCAAATANNN back to top
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