EsuBft1008_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Seed ortholog	164328.Phyra85518
ProteomeId	EsuBft1008_4
Protein domains	IPR013103
Protein domains	SSF56672
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	1077
Hectar predicted targeting category	other localisation
Evalue	3.89e-54
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	GAG-pre-integrase domain
COG category	L

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:710323..711568+
coding sequence from alignment at Scaffold_370:710323..711568+

spliced messenger RNA

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1077bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
CATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGC
GTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCC
ATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCAC
CTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCT
ACATCGACACGGAGGATAAACAGCATCGTGTCTTGTCTTCGATGGAAGCC
GAGTATATTGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGC
TGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCC
TTGAGGACAACCAGGGGGTCATAGTGTTGGTGCAGAACCCCCTCAGCTCC
GGTCGCACGAAACACATCGACGTGCGGTTCCATTTCATCCGCGGATTGTT
TAGGTCGGGGGATATTTCAGCCAAATTTGTTCCGACAACAGAGCAACACG
CGGATCGCCTAACCAAGGCCCTTAGCAGGGCCAGTCTGCCGTACCACCGG
CGCAAGTTGATGGATTTGCCGGAGTAG

protein sequence of EsuBft1008_4a-0001

>EsuBft1008_4 ID=EsuBft1008_4|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=358bp
MLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAER
AIYGLKQSGRQWGYHAADTLVENGFEQFKADPCEFRNMVDEVVVMIIVIY
VDDILVAGSDEDWDCEELLTSLNKKFPTNNVGECERFDGCAIERDGEAGT
LRISQTAYTDSMVRRFVMMWVSTFSRPDVSFAVRAAARHAHAPAKRHWDA
IQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYIDTEDKQHRVLSSMEA
EYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGVIVLVQNPLSS
GRTKHIDVRFHFIRGLFRSGDISAKFVPTTEQHADRLTKALSRASLPYHR
RKLMDLPE

mRNA from alignment at Scaffold_370:710323..711568+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1246bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
GTACAATCGACCTTCCACATTCCCGCTACCCCTGGTGCCGACCTAGGACC
AAAGCGAGATGACGAGGAGGGAGGAAAGTGGCCGGTGAGGGAGGCCATCG
GCAGCATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCC
GTGCGTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGA
TGCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCA
TCACCTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCT
AGCTACATCGACACGGAGGATAAACGTACGGTGTCAGAGTTGGCGACGAC
GGTTGGAGATACCGTAGTCAGCCATGGTAGCAAGACACAGAGCATCGTGT
CTTGTCTTCGATGGAAGCCGAGTATATTGCTGCCGGGGAGGGCGTCAAGG
AGGCGTTGTTTGTGCGTGCTGTGCTTTCGTTTGTTGCCCCAGAGACCAGT
GGTAGCAGCATCCAGGTCCTTGAGGACAACCAGGGGGTCATAGTGTTGGT
GCAGAACCCCCTCAGCTCCGGTCGCACGAAACACATCGACGTGCGGTTCC
ATTTCATCCGCGGATTGTTTAGGTCGGGGGATATTTCAGCCAAATTTGTT
CCGACAACAGAGCAACACGCGGATCGCCTAACCAAGGCCCTTAGCAGGGC
CAGTCTGCCGTACCACCGGCGCAAGTTGATGGATTTGCCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_370:710323..711568+

>EsuBft1008_4a-0001 ID=EsuBft1008_4a-0001|Name=EsuBft1008_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1077bp|location=Sequence derived from alignment at Scaffold_370:710323..711568+ (Ectocarpus subulatus male Bft15b)
ATGCTTGCGGTAGCGAACGAGAAGGGCATGAACCTCAATCACTGGGATGT
GAAGCAGGCGTATACACACGCTACGCTAGACGAGGAGGTTTTTCTGAAGC
TCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGGCTGAGCGT
GCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTACCACGCTGC
TGATACGCTAGTCGAGAACGGGTTCGAGCAGTTCAAGGCGGACCCGTGTG
AATTCCGCAACATGGTAGACGAAGTCGTGGTGATGATTATTGTGATATAC
GTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGGGATTGCGAGGA
GTTGCTTACTTCTCTCAACAAGAAATTTCCCACCAATAATGTTGGAGAAT
GCGAACGGTTTGACGGGTGCGCCATTGAGAGAGATGGAGAGGCTGGGACT
CTTAGAATCTCCCAAACCGCGTACACTGATAGCATGGTGAGACGCTTCGT
CATGATGTGGGTTTCAACGTTCTCGCGTCCAGACGTCTCGTTCGCCGTGC
GTGCGGCAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCC
ATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCAC
CTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCT
ACATCGACACGGAGGATAAACAGCATCGTGTCTTGTCTTCGATGGAAGCC
GAGTATATTGCTGCCGGGGAGGGCGTCAAGGAGGCGTTGTTTGTGCGTGC
TGTGCTTTCGTTTGTTGCCCCAGAGACCAGTGGTAGCAGCATCCAGGTCC
TTGAGGACAACCAGGGGGTCATAGTGTTGGTGCAGAACCCCCTCAGCTCC
GGTCGCACGAAACACATCGACGTGCGGTTCCATTTCATCCGCGGATTGTT
TAGGTCGGGGGATATTTCAGCCAAATTTGTTCCGACAACAGAGCAACACG
CGGATCGCCTAACCAAGGCCCTTAGCAGGGCCAGTCTGCCGTACCACCGG
CGCAAGTTGATGGATTTGCCGGAGTAG