EsuBft213_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft213_2a-0001
Unique Name	EsuBft213_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_370	contig	Scaffold_370:606364..607745 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft213_2
Protein domains	Coil
Protein domains	PTHR19446
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	1260
Evalue	1.51e-20
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft213_2a	EsuBft213_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_370 606364..607745 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_2a-0001-exon	agat-exon-95905	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 606364..607128 -
EsuBft213_2a-0001-exon	EsuBft213_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_370 607251..607745 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_2a-0001-cds	EsuBft213_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_370 606364..607128 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft213_2a-0001	EsuBft213_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_370 606364..607745 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_370:606364..607745-
coding sequence from alignment at Scaffold_370:606364..607745-

spliced messenger RNA

>EsuBft213_2a-0001 ID=EsuBft213_2a-0001|Name=EsuBft213_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1260bp|location=Sequence derived from alignment at Scaffold_370:606364..607745- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTGAACGGTAGTAAGGAATGCGATAGGCCAGAGTTCACTAGGCA
ACGGACAGTTTGCAATGAATACTCGATCCTCGACTACATCCTGGGAGATA
GGGGGAGCACACAGATCCCAGAGCTGCACGTAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTGACATGGGATGAATTCCAGAAGGGACT
GGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACG
GACAGGTAGACGTACAAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAG
TCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAGGAAGGTGGACCA
AAAGAAAACAGGTGAAGGACTAGTTAAAAAGAAGAACAAGTGTATTTGGG
ACGAAGGAGTGCAGAAGGCCCACGGAGGCCTGGAGGGGAACGTCAAGCAC
ATGTGGGAAGGGATTAGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCAC
GGAGAATGAAGATTTTGACCAAGTGTTCAAGAATGAGGTGGACGCATGGG
CCCAGAAAGAAGAGACAACGAAGGCAGACGTTGGGATCGTAGAACTAGAA
AAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTG
CCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTG
GGGGGAAGGGGATGATCCAAGGGGATGATCTGGTACTGCTGTACAATTGG
GAAAACGAGTATACGCCAAGTAGATGGAAGGAAGGAGTGGTTGTGAACTT
GTTTAAGAAGGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACAC
TGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATA
GTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTT
CCGCANNNNN

protein sequence of EsuBft213_2a-0001

>EsuBft213_2 ID=EsuBft213_2|Name=EsuBft213_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=420bp
MVLNGSKECDRPEFTRQRTVCNEYSILDYILGDRGSTQIPELHVXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXVTWDEFQKGLAGSVESFRKLLRSVEDGQVDVQAAGDRVIEGWE
SIVNATAERVVGRKVDQKKTGEGLVKKKNKCIWDEGVQKAHGGLEGNVKH
MWEGISGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXEVLAGHYKRLGVPTENEDFDQVFKNEVDAWAQKEETTKADVGIVELE
KEFTEDEVEACVNKLKCHKAAGADGIVNEFMKFGGKGMIQGDDLVLLYNW
ENEYTPSRWKEGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRI
VGVLEKEHSISEGQAGFRXX

mRNA from alignment at Scaffold_370:606364..607745-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft213_2a-0001 ID=EsuBft213_2a-0001|Name=EsuBft213_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1382bp|location=Sequence derived from alignment at Scaffold_370:606364..607745- (Ectocarpus subulatus male Bft15b)
ATGGTGTTGAACGGTAGTAAGGAATGCGATAGGCCAGAGTTCACTAGGCA
ACGGACAGTTTGCAATGAATACTCGATCCTCGACTACATCCTGGGAGATA
GGGGGAGCACACAGATCCCAGAGCTGCACGTAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTGACATGGGATGAATTCCAGAAGGGACT
GGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACG
GACAGGTAGACGTACAAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAG
TCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAGGAAGGTGGTACG
ATGTGGGGTATCGGTTAAGTGGTGGGATGACGAGCTGAAAGAAGAAATAG
GGGAACGTAGAGAAGTCTGCAAGCAGTACCTGAGTGACGCGTCTGAGGAG
AGTTGGGAAAAGTACAGGACCAAAAGAAAACAGGTGAAGGACTAGTTAAA
AAGAAGAACAAGTGTATTTGGGACGAAGGAGTGCAGAAGGCCCACGGAGG
CCTGGAGGGGAACGTCAAGCACATGTGGGAAGGGATTAGTGGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGTTCTAGCAGGACACT
ACAAGAGACTTGGAGTGCCCACGGAGAATGAAGATTTTGACCAAGTGTTC
AAGAATGAGGTGGACGCATGGGCCCAGAAAGAAGAGACAACGAAGGCAGA
CGTTGGGATCGTAGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGG
CGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCAGGAGCGGATGGGATA
GTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGATGATCCAAGGGGATGA
TCTGGTACTGCTGTACAATTGGGAAAACGAGTATACGCCAAGTAGATGGA
AGGAAGGAGTGGTTGTGAACTTGTTTAAGAAGGGAGACAAGACTGACCCA
GGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTG
TAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCA
TTAGTGAGGGCCAGGCAGGTTTCCGCANNNNN

Coding sequence (CDS) from alignment at Scaffold_370:606364..607745-

>EsuBft213_2a-0001 ID=EsuBft213_2a-0001|Name=EsuBft213_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1260bp|location=Sequence derived from alignment at Scaffold_370:606364..607745- (Ectocarpus subulatus male Bft15b)
ATGGTGTTGAACGGTAGTAAGGAATGCGATAGGCCAGAGTTCACTAGGCA
ACGGACAGTTTGCAATGAATACTCGATCCTCGACTACATCCTGGGAGATA
GGGGGAGCACACAGATCCCAGAGCTGCACGTAAGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTGACATGGGATGAATTCCAGAAGGGACT
GGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACG
GACAGGTAGACGTACAAGCAGCAGGGGACAGGGTGATTGAAGGGTGGGAG
TCCATCGTGAACGCAACGGCAGAGAGAGTAGTGGGAAGGAAGGTGGACCA
AAAGAAAACAGGTGAAGGACTAGTTAAAAAGAAGAACAAGTGTATTTGGG
ACGAAGGAGTGCAGAAGGCCCACGGAGGCCTGGAGGGGAACGTCAAGCAC
ATGTGGGAAGGGATTAGTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGAAGTTCTAGCAGGACACTACAAGAGACTTGGAGTGCCCAC
GGAGAATGAAGATTTTGACCAAGTGTTCAAGAATGAGGTGGACGCATGGG
CCCAGAAAGAAGAGACAACGAAGGCAGACGTTGGGATCGTAGAACTAGAA
AAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTG
CCACAAAGCAGCAGGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTG
GGGGGAAGGGGATGATCCAAGGGGATGATCTGGTACTGCTGTACAATTGG
GAAAACGAGTATACGCCAAGTAGATGGAAGGAAGGAGTGGTTGTGAACTT
GTTTAAGAAGGGAGACAAGACTGACCCAGGAAACTACAGGGGGATCACAC
TGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATA
GTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTT
CCGCANNNNN