EsuBft1099_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1099_3a-0001
Unique Name	EsuBft1099_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_365	contig	Scaffold_365:167079..169154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	588596.U9TTJ1
ProteomeId	EsuBft1099_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4751\|Fungi
Length	207
Hectar predicted targeting category	other localisation
Evalue	2.31e-05
EggNOG OGs	28KYB@1\|root,2QTF2@2759\|Eukaryota,39UQK@33154\|Opisthokonta,3P4WI@4751\|Fungi
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-27_003370.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Kaptin (actin binding protein)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_3a	EsuBft1099_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_365 167079..169154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_3a-0001-exon	EsuBft1099_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_365 167079..169154 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_3a-0001-cds	EsuBft1099_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_365 167079..169154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1099_3a-0001	EsuBft1099_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_365 167079..169154 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_365:167079..169154+
coding sequence from alignment at Scaffold_365:167079..169154+

spliced messenger RNA

>EsuBft1099_3a-0001 ID=EsuBft1099_3a-0001|Name=EsuBft1099_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2076bp|location=Sequence derived from alignment at Scaffold_365:167079..169154+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACACATGCGCAACTGGCTCTATGTACATACTTCTGTGGTTCACC
GATCGACTTGTACGCTCGTCATTGCCGATACGCAAGGCTGCTGGTTGTCA
ACGAGACGGGGCTGTTCAAGCTCCGGGCAGGCCTCGGCCCGGCCGGTAAC
CGCTACGGCCTGGGACAGCTTCCCGTAGAATCGCTCCCGGAAGTCGCCAA
GGTTGTCGCTTGTACCGTCGTTCGCACGCGTCGGGGAGACGGCAGTGGCG
GCGGCGGCGACGGAGGTGGGCGGACCCCAGGCATGGTTTGCGTTGCGATG
CTTGTGCCCCCGCTCCCGGCATCCGCAGCCGTGGCGGTGGACAACCACGG
AGGAGGTGGCGGCGGCGGGAATAGGCAGGGTGACGTCGCCGGAGGTCCTG
CCGTGAGAGCGGCAGCGGCGACGGCAGCGAGCGGTAGCGGCCTCCTCAAC
GTGTACGCTCTGGACGGCGAGAGGGGCTCGGAGGTAGACCGAGCTCTGCG
ACGAGAGCCGCAACAGCTGGTGTTGCCGTACATGCCGGTAGGGATGGCGC
ACACAACAGTGTGGCGGAGTGTTGCCGCGCTCCCTAACTTTGTCGGAGGG
GGGGGGAGCGGGGCAGGGGAAGGAGCCGGTGCATCGTCGTCGTCCTCACC
AACCAACAACAACAACAACAACAACAACAACAACAACAACAACCATCGGG
TTAGAGTCGAAAGAGGAGACGCCGTGCTCGTGTGGGACCAAAGCGGGATC
GTGCATGGGTATACGCGTTGGGAGGGCGGCGGCGACCGCCGAACCGCCGC
CGACAGCAGCACCAGTAGAGGCGGAGGCGGAGGAGGTACGAGGAGCGGAG
GGGGCGCCACGGGCAACGTCTCCATACTCACCGCGGAGTCCCGGGAGAGC
CTCGAGACGCTGGTGCCAGAGCTCAGGGGCATCGACAGCCCGGTCTCGTG
CCTCGCCTTCAATGCCGTGGAGGAAGGGGACGGCTGGGCGAGGAGGCGGA
GAAGAGTGCTGGCCGGCTGCATGGAGAGCGCCCGCTGCGTCTCGCTCCAC
GATGCGGCCAGCGGGTGCAGAGAAACGGCGGTTGCTTCGGTCCGCGGTCC
GGTGGGAGCCGTAGCGCTGAACTCGCGCCCCAGGTTCATGCCGTACGACC
GGCACGTCGACGACAGGTGGGGCGGAAACGTCGCCGGGTTCGCTTGCACC
GAGCTCGACATGTTGGCGTGGCTCGTGGAAGGCGGCAACGCCGCTGGTGC
CGGTGTCGGTGGAAGGTGGTACACCGGCTCCCTCCCGTTGGGAGAGGCCG
TCGGCGGCGGTGGTGGCGGCGACCAGGTTACGTGCATGGAGTGCGCTGAT
TTCTTGCGCGACGGCTCGACAGCGGTGGCCATCGGCACGAACCTCGGCAA
GGTTATCGTCTGCAGTGCGGAGCCCAACAACGGAGGCAGCGAAGGGGGGT
TAGCCGGGGGTCTGGAGGAGGTTGGCAGGGTGGACGCCGGCGGCAGCGGC
GGTGGCGCAGGGCTCGTGTTCGGCTTGGAGGTCAACGGTGACGACAGCAG
CGAAGAGGACGAGGCAGGTTGTTCGTCGAACCCGGTTCAGCCGCCCTCTA
GACGCGGGGACAGCGTTTCGCCACGGCCTTCCGGGTTGGTATCGTCGGCG
GCAGACCGGCAGTTCCACTCGCGTCGCGTCGCCGACAGACAGGGGGGCGG
CGGTAGCAGGGAACAACAGCAGCAGCAACGGCCTCTGCTGACCGCGAGGT
GGCAGCGGGACTTGCCTCACGGGGTCCTTAGAATCGCGTTCGGCGACTTC
AACCACGACGGCGTGAGGGAGTTGGTAGCTGCGACGCAGTACGGGGTCCA
TGTGTTTCGGCCGGACTACAGGGAGGAGGCGAGCCGGTTCGCGAAGACGA
TGCACGCGCTGGAGATGCTCCAGCCGAAGGAAGGCGACGTGGGCGACTTC
ATGAGCAGCGCGAGCGACAACGATGATGATGGTCGAGACGAAGGTTCCCG
ACCACGTGGCGCGGACGCATCAGGGATGGAGGAGATTCAGGGCGTTGGTG
CCGCCGCCTTGGATAGTGCTGAATGA

protein sequence of EsuBft1099_3a-0001

>EsuBft1099_3 ID=EsuBft1099_3|Name=EsuBft1099_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=691bp
MSTHAQLALCTYFCGSPIDLYARHCRYARLLVVNETGLFKLRAGLGPAGN
RYGLGQLPVESLPEVAKVVACTVVRTRRGDGSGGGGDGGGRTPGMVCVAM
LVPPLPASAAVAVDNHGGGGGGGNRQGDVAGGPAVRAAAATAASGSGLLN
VYALDGERGSEVDRALRREPQQLVLPYMPVGMAHTTVWRSVAALPNFVGG
GGSGAGEGAGASSSSSPTNNNNNNNNNNNNNHRVRVERGDAVLVWDQSGI
VHGYTRWEGGGDRRTAADSSTSRGGGGGGTRSGGGATGNVSILTAESRES
LETLVPELRGIDSPVSCLAFNAVEEGDGWARRRRRVLAGCMESARCVSLH
DAASGCRETAVASVRGPVGAVALNSRPRFMPYDRHVDDRWGGNVAGFACT
ELDMLAWLVEGGNAAGAGVGGRWYTGSLPLGEAVGGGGGGDQVTCMECAD
FLRDGSTAVAIGTNLGKVIVCSAEPNNGGSEGGLAGGLEEVGRVDAGGSG
GGAGLVFGLEVNGDDSSEEDEAGCSSNPVQPPSRRGDSVSPRPSGLVSSA
ADRQFHSRRVADRQGGGGSREQQQQQRPLLTARWQRDLPHGVLRIAFGDF
NHDGVRELVAATQYGVHVFRPDYREEASRFAKTMHALEMLQPKEGDVGDF
MSSASDNDDDGRDEGSRPRGADASGMEEIQGVGAAALDSAE

mRNA from alignment at Scaffold_365:167079..169154+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1099_3a-0001 ID=EsuBft1099_3a-0001|Name=EsuBft1099_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2076bp|location=Sequence derived from alignment at Scaffold_365:167079..169154+ (Ectocarpus subulatus male Bft15b)
ATGAGCACACATGCGCAACTGGCTCTATGTACATACTTCTGTGGTTCACC
GATCGACTTGTACGCTCGTCATTGCCGATACGCAAGGCTGCTGGTTGTCA
ACGAGACGGGGCTGTTCAAGCTCCGGGCAGGCCTCGGCCCGGCCGGTAAC
CGCTACGGCCTGGGACAGCTTCCCGTAGAATCGCTCCCGGAAGTCGCCAA
GGTTGTCGCTTGTACCGTCGTTCGCACGCGTCGGGGAGACGGCAGTGGCG
GCGGCGGCGACGGAGGTGGGCGGACCCCAGGCATGGTTTGCGTTGCGATG
CTTGTGCCCCCGCTCCCGGCATCCGCAGCCGTGGCGGTGGACAACCACGG
AGGAGGTGGCGGCGGCGGGAATAGGCAGGGTGACGTCGCCGGAGGTCCTG
CCGTGAGAGCGGCAGCGGCGACGGCAGCGAGCGGTAGCGGCCTCCTCAAC
GTGTACGCTCTGGACGGCGAGAGGGGCTCGGAGGTAGACCGAGCTCTGCG
ACGAGAGCCGCAACAGCTGGTGTTGCCGTACATGCCGGTAGGGATGGCGC
ACACAACAGTGTGGCGGAGTGTTGCCGCGCTCCCTAACTTTGTCGGAGGG
GGGGGGAGCGGGGCAGGGGAAGGAGCCGGTGCATCGTCGTCGTCCTCACC
AACCAACAACAACAACAACAACAACAACAACAACAACAACAACCATCGGG
TTAGAGTCGAAAGAGGAGACGCCGTGCTCGTGTGGGACCAAAGCGGGATC
GTGCATGGGTATACGCGTTGGGAGGGCGGCGGCGACCGCCGAACCGCCGC
CGACAGCAGCACCAGTAGAGGCGGAGGCGGAGGAGGTACGAGGAGCGGAG
GGGGCGCCACGGGCAACGTCTCCATACTCACCGCGGAGTCCCGGGAGAGC
CTCGAGACGCTGGTGCCAGAGCTCAGGGGCATCGACAGCCCGGTCTCGTG
CCTCGCCTTCAATGCCGTGGAGGAAGGGGACGGCTGGGCGAGGAGGCGGA
GAAGAGTGCTGGCCGGCTGCATGGAGAGCGCCCGCTGCGTCTCGCTCCAC
GATGCGGCCAGCGGGTGCAGAGAAACGGCGGTTGCTTCGGTCCGCGGTCC
GGTGGGAGCCGTAGCGCTGAACTCGCGCCCCAGGTTCATGCCGTACGACC
GGCACGTCGACGACAGGTGGGGCGGAAACGTCGCCGGGTTCGCTTGCACC
GAGCTCGACATGTTGGCGTGGCTCGTGGAAGGCGGCAACGCCGCTGGTGC
CGGTGTCGGTGGAAGGTGGTACACCGGCTCCCTCCCGTTGGGAGAGGCCG
TCGGCGGCGGTGGTGGCGGCGACCAGGTTACGTGCATGGAGTGCGCTGAT
TTCTTGCGCGACGGCTCGACAGCGGTGGCCATCGGCACGAACCTCGGCAA
GGTTATCGTCTGCAGTGCGGAGCCCAACAACGGAGGCAGCGAAGGGGGGT
TAGCCGGGGGTCTGGAGGAGGTTGGCAGGGTGGACGCCGGCGGCAGCGGC
GGTGGCGCAGGGCTCGTGTTCGGCTTGGAGGTCAACGGTGACGACAGCAG
CGAAGAGGACGAGGCAGGTTGTTCGTCGAACCCGGTTCAGCCGCCCTCTA
GACGCGGGGACAGCGTTTCGCCACGGCCTTCCGGGTTGGTATCGTCGGCG
GCAGACCGGCAGTTCCACTCGCGTCGCGTCGCCGACAGACAGGGGGGCGG
CGGTAGCAGGGAACAACAGCAGCAGCAACGGCCTCTGCTGACCGCGAGGT
GGCAGCGGGACTTGCCTCACGGGGTCCTTAGAATCGCGTTCGGCGACTTC
AACCACGACGGCGTGAGGGAGTTGGTAGCTGCGACGCAGTACGGGGTCCA
TGTGTTTCGGCCGGACTACAGGGAGGAGGCGAGCCGGTTCGCGAAGACGA
TGCACGCGCTGGAGATGCTCCAGCCGAAGGAAGGCGACGTGGGCGACTTC
ATGAGCAGCGCGAGCGACAACGATGATGATGGTCGAGACGAAGGTTCCCG
ACCACGTGGCGCGGACGCATCAGGGATGGAGGAGATTCAGGGCGTTGGTG
CCGCCGCCTTGGATAGTGCTGAATGA

Coding sequence (CDS) from alignment at Scaffold_365:167079..169154+

>EsuBft1099_3a-0001 ID=EsuBft1099_3a-0001|Name=EsuBft1099_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2076bp|location=Sequence derived from alignment at Scaffold_365:167079..169154+ (Ectocarpus subulatus male Bft15b)
ATGAGCACACATGCGCAACTGGCTCTATGTACATACTTCTGTGGTTCACC
GATCGACTTGTACGCTCGTCATTGCCGATACGCAAGGCTGCTGGTTGTCA
ACGAGACGGGGCTGTTCAAGCTCCGGGCAGGCCTCGGCCCGGCCGGTAAC
CGCTACGGCCTGGGACAGCTTCCCGTAGAATCGCTCCCGGAAGTCGCCAA
GGTTGTCGCTTGTACCGTCGTTCGCACGCGTCGGGGAGACGGCAGTGGCG
GCGGCGGCGACGGAGGTGGGCGGACCCCAGGCATGGTTTGCGTTGCGATG
CTTGTGCCCCCGCTCCCGGCATCCGCAGCCGTGGCGGTGGACAACCACGG
AGGAGGTGGCGGCGGCGGGAATAGGCAGGGTGACGTCGCCGGAGGTCCTG
CCGTGAGAGCGGCAGCGGCGACGGCAGCGAGCGGTAGCGGCCTCCTCAAC
GTGTACGCTCTGGACGGCGAGAGGGGCTCGGAGGTAGACCGAGCTCTGCG
ACGAGAGCCGCAACAGCTGGTGTTGCCGTACATGCCGGTAGGGATGGCGC
ACACAACAGTGTGGCGGAGTGTTGCCGCGCTCCCTAACTTTGTCGGAGGG
GGGGGGAGCGGGGCAGGGGAAGGAGCCGGTGCATCGTCGTCGTCCTCACC
AACCAACAACAACAACAACAACAACAACAACAACAACAACAACCATCGGG
TTAGAGTCGAAAGAGGAGACGCCGTGCTCGTGTGGGACCAAAGCGGGATC
GTGCATGGGTATACGCGTTGGGAGGGCGGCGGCGACCGCCGAACCGCCGC
CGACAGCAGCACCAGTAGAGGCGGAGGCGGAGGAGGTACGAGGAGCGGAG
GGGGCGCCACGGGCAACGTCTCCATACTCACCGCGGAGTCCCGGGAGAGC
CTCGAGACGCTGGTGCCAGAGCTCAGGGGCATCGACAGCCCGGTCTCGTG
CCTCGCCTTCAATGCCGTGGAGGAAGGGGACGGCTGGGCGAGGAGGCGGA
GAAGAGTGCTGGCCGGCTGCATGGAGAGCGCCCGCTGCGTCTCGCTCCAC
GATGCGGCCAGCGGGTGCAGAGAAACGGCGGTTGCTTCGGTCCGCGGTCC
GGTGGGAGCCGTAGCGCTGAACTCGCGCCCCAGGTTCATGCCGTACGACC
GGCACGTCGACGACAGGTGGGGCGGAAACGTCGCCGGGTTCGCTTGCACC
GAGCTCGACATGTTGGCGTGGCTCGTGGAAGGCGGCAACGCCGCTGGTGC
CGGTGTCGGTGGAAGGTGGTACACCGGCTCCCTCCCGTTGGGAGAGGCCG
TCGGCGGCGGTGGTGGCGGCGACCAGGTTACGTGCATGGAGTGCGCTGAT
TTCTTGCGCGACGGCTCGACAGCGGTGGCCATCGGCACGAACCTCGGCAA
GGTTATCGTCTGCAGTGCGGAGCCCAACAACGGAGGCAGCGAAGGGGGGT
TAGCCGGGGGTCTGGAGGAGGTTGGCAGGGTGGACGCCGGCGGCAGCGGC
GGTGGCGCAGGGCTCGTGTTCGGCTTGGAGGTCAACGGTGACGACAGCAG
CGAAGAGGACGAGGCAGGTTGTTCGTCGAACCCGGTTCAGCCGCCCTCTA
GACGCGGGGACAGCGTTTCGCCACGGCCTTCCGGGTTGGTATCGTCGGCG
GCAGACCGGCAGTTCCACTCGCGTCGCGTCGCCGACAGACAGGGGGGCGG
CGGTAGCAGGGAACAACAGCAGCAGCAACGGCCTCTGCTGACCGCGAGGT
GGCAGCGGGACTTGCCTCACGGGGTCCTTAGAATCGCGTTCGGCGACTTC
AACCACGACGGCGTGAGGGAGTTGGTAGCTGCGACGCAGTACGGGGTCCA
TGTGTTTCGGCCGGACTACAGGGAGGAGGCGAGCCGGTTCGCGAAGACGA
TGCACGCGCTGGAGATGCTCCAGCCGAAGGAAGGCGACGTGGGCGACTTC
ATGAGCAGCGCGAGCGACAACGATGATGATGGTCGAGACGAAGGTTCCCG
ACCACGTGGCGCGGACGCATCAGGGATGGAGGAGATTCAGGGCGTTGGTG
CCGCCGCCTTGGATAGTGCTGAATGA