EsuBft931_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft931_2a-0001
Unique NameEsuBft931_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_1244contigScaffold_1244:4122..4957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft931_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length64
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2aEsuBft931_2aEctocarpus subulatus male Bft15bgeneScaffold_1244 4122..4957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2a-0001-exonagat-exon-48327Ectocarpus subulatus male Bft15bexonScaffold_1244 4122..4236 -
EsuBft931_2a-0001-exonEsuBft931_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_1244 4428..4957 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2a-0001-exonagat-three_prime_utr-23186Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_1244 4122..4168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2a-0001-cdsEsuBft931_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_1244 4169..4236 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2a-0001-exonagat-five_prime_utr-15082Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_1244 4558..4957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft931_2a-0001EsuBft931_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_1244 4169..4557 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft931_2a-0001 ID=EsuBft931_2a-0001|Name=EsuBft931_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=645bp|location=Sequence derived from alignment at Scaffold_1244:4122..4957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCAAATCTTGTTTTGACTTGATATTACAGAGTGAGAGAAGAACGCGAAAT
ACTCGATGCCACAAACGAGCTGGCCCTTGCGGTTCAGTACACACCCGTGA
ACAGGACAGATCTATGGATTCATCGGTCAATTTTTCAATCGGCGGGTTCT
AACCCATCGAACACTCAAAAAACAAGTGATTTTCGGTCCTTTTCGCCTGC
TGCCACGAACGTGAGCAACTTCAACGCAAATCGCCACCGATGAAATCGGA
GCTCTCCTTCTCAGCAAGGTGACGCAAAAAGCCACGCTAGAATCCACCGC
GTCATCGTCGCGCAAAACGAATCCCCAGATCGGGTACTCATCATGGGTAC
TCATCGGTACGTCTGGGAAGAAAAAATCGCCAGACTCGAGGAAAAAACGA
ATGCAAAAGTTCTCGAGTAAAAACGAGATATGTGGCGAAAAACATGGTAT
GACGATGGAGGCCAGGGCGTCGCAAGCAAGGTTCGACGGGCTGGTGAGGA
GGGCAGATGTCAAGGAGTTGACACGGAGCCTCGTCTTAGGTTCGTGGGCG
CGGGCGGAGGCAAAGCGAGCGCGGTGGTGGCCGGAGCACCTGGGATGATG
TGCGAGAGTTTTTGTTTTTTTTGTGCGTGTGTTTTTCTTGCTGCT
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protein sequence of EsuBft931_2a-0001

>EsuBft931_2 ID=EsuBft931_2|Name=EsuBft931_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MQKFSSKNEICGEKHGMTMEARASQARFDGLVRRADVKELTRSLVLGSWA
RAEAKRARWWPEHLG
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mRNA from alignment at Scaffold_1244:4122..4957-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft931_2a-0001 ID=EsuBft931_2a-0001|Name=EsuBft931_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=836bp|location=Sequence derived from alignment at Scaffold_1244:4122..4957- (Ectocarpus subulatus male Bft15b)
CCAAATCTTGTTTTGACTTGATATTACAGAGTGAGAGAAGAACGCGAAAT
ACTCGATGCCACAAACGAGCTGGCCCTTGCGGTTCAGTACACACCCGTGA
ACAGGACAGATCTATGGATTCATCGGTCAATTTTTCAATCGGCGGGTTCT
AACCCATCGAACACTCAAAAAACAAGTGATTTTCGGTCCTTTTCGCCTGC
TGCCACGAACGTGAGCAACTTCAACGCAAATCGCCACCGATGAAATCGGA
GCTCTCCTTCTCAGCAAGGTGACGCAAAAAGCCACGCTAGAATCCACCGC
GTCATCGTCGCGCAAAACGAATCCCCAGATCGGGTACTCATCATGGGTAC
TCATCGGTACGTCTGGGAAGAAAAAATCGCCAGACTCGAGGAAAAAACGA
ATGCAAAAGTTCTCGAGTAAAAACGAGATATGTGGCGAAAAACATGGTAT
GACGATGGAGGCCAGGGCGTCGCAAGCAAGGTTCGACGGGCTGGTGAGGA
GGGCAGATGTCAAGGAGTTGACACGGAGCCGTGACGCCGCAACAGCGAAA
GCTGACGCCGCCCGCGTACAAAAGAACAAGGCGAACGCGGCAAAGAGAAA
GGCGGAGAGAGTAGCAGCAGAAGAAAAAGAAGCAGCAGCAGCAGAAAAAG
TTGAAGCAAGCAGGCAGCGAGAGCTACGCCAGGTAGCAGCACAAGCTGAT
AGGAGGCGGGGTGGTAGGCAGTCGTCTTAGGTTCGTGGGCGCGGGCGGAG
GCAAAGCGAGCGCGGTGGTGGCCGGAGCACCTGGGATGATGTGCGAGAGT
TTTTGTTTTTTTTGTGCGTGTGTTTTTCTTGCTGCT
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Coding sequence (CDS) from alignment at Scaffold_1244:4122..4957-

>EsuBft931_2a-0001 ID=EsuBft931_2a-0001|Name=EsuBft931_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_1244:4122..4957- (Ectocarpus subulatus male Bft15b)
ATGCAAAAGTTCTCGAGTAAAAACGAGATATGTGGCGAAAAACATGGTAT
GACGATGGAGGCCAGGGCGTCGCAAGCAAGGTTCGACGGGCTGGTGAGGA
GGGCAGATGTCAAGGAGTTGACACGGAGCCTCGTCTTAGGTTCGTGGGCG
CGGGCGGAGGCAAAGCGAGCGCGGTGGTGGCCGGAGCACCTGGGATGA
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