EsuBft1124_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1124_5a-0001
Unique Name	EsuBft1124_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_361	contig	Scaffold_361:22446..25656 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1124_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	316
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a	EsuBft1124_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_361 22446..25656 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a-0001	EsuBft1124_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_361 22499..22666 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a-0001-exon	EsuBft1124_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_361 22446..24601 +
EsuBft1124_5a-0001-exon	agat-exon-56921	Ectocarpus subulatus male Bft15b	exon	Scaffold_361 24646..25656 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a-0001-exon	agat-five_prime_utr-741	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_361 22446..22498 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a-0001-cds	EsuBft1124_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_361 22499..22666 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1124_5a-0001-exon	agat-three_prime_utr-1167	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_361 22667..24601 +
EsuBft1124_5a-0001-exon	agat-three_prime_utr-1168	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_361 24646..25656 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_361:22446..25656+
coding sequence from alignment at Scaffold_361:22446..25656+

spliced messenger RNA

>EsuBft1124_5a-0001 ID=EsuBft1124_5a-0001|Name=EsuBft1124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3167bp|location=Sequence derived from alignment at Scaffold_361:22446..25656+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTGTTGTTGTTGTTCTCCCTATCGTCGTTGTTGTGACTGCTCGCCTC
GTGATGCTGCTGCCCCCCTCTGGTATCCTCTTCGCCGAGAGGAGACTCGG
AGAAGCGTGGGTCTTGAGGTGTCATGGCAGACACGATCCCCTTTCGGATC
GGACACAGCAGGGGAGGATCGGAGCCGCGCTCCCCAACACCACGAGCGTC
GGAGGAGCGGCCGCGTTCTGAGGCACGGTCTCAGCGTCACCGTTGCCAAC
TTCAGGTTTTCTTCCCTCGCCGGTTTGAGCTCTTCTCTCTTGGGCAGCAG
GCCGCTCAACAACCAAGCAGAGGCATCGTTTTCTGTTTTCTTTCGCGCGT
TTTGAAAAAATTGAGAAAAAAAAGCCCGGGGATAGGGGTTGCCAGAGGAG
ATCTGCGCGCCATGCACGCATCACCAACCCGCGAAAAACTTCGGCAGGCG
GGGCGGCTGAACCCCTCTCGAGCTCTTGCCATGAGGCATGCACCGTACAG
GAGCTCGTCAGTCCAAGGTCGGAGTTCTTCAGTTAGAGAGGCAAGGCCGC
CGCAGGGTAGATATGCAAGTGTCAACAAAAAAAATAAAACATGTGTGTCC
AGAGTGTCTAGCAGGATCCGTGTGGTCGGTAACATGTGACGATGTAAGAG
CTCTCTCGTTCTCCCCGCCTCTTTCTCGATCGTCAATCCATAGCCATTGT
AACATGTTTGATTCGATGACCAGGAGAGTTGACATCGGGGTCACCCATGG
CCTGTTTTGCTTTCGCGCATCCATGTGCTCAGTAGTCATCACGCCGGCGT
TTCGGCAAGATTTATCTGACGAGCATGTGTAACTGCTGTTGTCATCTCCG
CCGTGCCATGCAGTAGAAGCGTGCGGCAGGATAGGGAAAGTAGCCAAGAT
GGGATAGGCATGATTTCATCACACCTTTGCGCCAATACCATTGGCTTTGG
GTGCAACTTTACGGGAAGCCGTCGCATCGCTGTGGTGCAAAAAGCGCTGT
TTGTTGTTGATTGAGGTGAAACAGGTTCAAACATGCAAACATGACTTGAT
GACCCGGTGTTTGACGCCTCGTTGGTTGCAGACCCCTGCGAAGCACGCGT
AGGTAATCATTATATGGGTAGCAAGACGACCCTCATGAATACCAGTGAGT
ATGCCATGTTGTTGCAAAATCGACGGGATTCGTGTCAAAAGGATTTCAAC
CGCACGACTTTCGTCCTTCATTTTCCCTTGCTCGACCTGCGTGCAAGCAA
GCGCTTCCGGCCTAGGCTAAAAAACAACGCAATACGCTCGACATCCCTTC
CTGTCTTCTTCTGGAAGTTGTTGTTGCCTGCCGCACACCGTGGTGCATTC
TGAACAGAAAGGGAAGGGGGTGAGGACAAGGAGAGGGCGACCTCGTTCGT
AGCAAAGTGGAGCCTGGGTGGACACCAGCAGCTAGCTGCAGTGCGTCACG
TCTACTAGCGAAGTCTAACACCCAGTCTTCATCTTATAAGATCGATCATC
TGCTTCCATCACCGGCAGTTGTTGGCATGCACGAGGGGCGTATCAGCAAT
GATTCTCTAGTAATTTTCAGTTTTCACGAGCGAGCTTTCCCTTCTTCGGT
TAGACATCGACGCAGACGAGAGAGACGGATGTGTCCGACTGCAGAAAAAA
GGGTTGAGGGCACAACACGTCCAACAACGTTTGATAGGGGAACCCAGACT
ACAGCAGTACATTAAACGTCCTTACAATAGCCAACTCTGCTGCTCTGCTG
TTATTCGATACCAGTAACAAGTGTCGCCTGGACTGATCAGCTTTTATCGG
CTTACTTTTGGTGAGCTTCAGTTCGATGCGTTTTTGTTGATGATGTCATG
ACGCCCTCTGCAAATGTGGAGCAGGACATCCCGCTGGTGATCGGACTGAG
AAGGAATAGTCTAGGTAGTGTCATGGCTGTTGTGTGATAACTTTTATGCA
TCCCCGATTCCCGGAATGCGAAGAACGCCTGCTTAGCGTTCCGCCATCAC
TACTCCCCCCCGTTCCTCGACTTCGTAAGCATGTTGAACTACAATAATAT
AATGATGGCTGGCTCCTTGTTTCTGTCGCAACCCTGAGTAGCTTTTTGTC
AACGCACACGTTGGAAATAGGAAATACAGCGGAAGCAACAACAGCAGGAC
AAACAGGGATTGCATGAAGCACGTCCAAGACCGAGCTTTGATGTGGATGT
ACATAGGTCGAGTGTTTACCAATGATGGCCTACTACAGCACACGCAAATA
TTGGGCGAATGAATGCATGCAGTTCAGGGAAAAGTAGGGATGACATCACT
GTGTAGACAGTTCGGAATGCGAGATGCGCCGGGCTGGCTGTCGATGGCCT
CTACCGCACGTACGCCTGTTCCGTAGCGGGTCGTGCTTCGCTCCAACGAT
GGGTAGAATGAACAACCGTCTTCTCGGATGGAGGCCAAAGGTTGGTACAC
TTGAACTATAATTCTCGCTGCCAAGGATCGCGTAGCCGTGCACGTACCCG
GAGTGCATGCACTGCCAGATGCCACATGCATACGTACAGCTTCGGCCGCG
GCAGCACAAAAGTGAAACTGAGTGATAACAAGAAACAGCATCGATCGTGC
CACCAAATGAAGGCACTTTGTGCTCACGCACGCTATGTGCTGCTTGTTTT
AAGAGTTTACTGGGAGAGATGACACCCCTGGAAAATATTGCTACTTGTTT
CCCTATCATCACGATTACCCACAACGCACCCTATCGCACAGTACACTCGT
TGATACAACCAACAGAACACCACACTTGCGCGTAAACTTGCTGTTGGTGA
CTTGGCGCTACACCAGTAGAATCTACTACTTCACCAGAATCACAAACAGC
ATGACAGCACCAACCAGTAGCACGCGTATCCGCCCGTCGAACGTGCGCCA
TCATGTGCTACACGAAACCAAACCTATTCACTATTCACACACCCCGGACC
GGAGGAGGAGAGGGCTGGTGACAAAAACGAGCGAATCTACACGAAAATTA
AAGCCCACCCAAAAATTCGAACACTAAGCGACCTGCGAGCAAAAAGAAGC
CATGAAGAAGCACGCGACCGACCTCGACGCATACAACCTCGCTCGAAGCC
ACTCCCTCTGATTGGCAATCTGTCACAAACATAACTCATTGTCTCGCCCC
CCCCCACCCCGCTCCCC

protein sequence of EsuBft1124_5a-0001

>EsuBft1124_5 ID=EsuBft1124_5|Name=EsuBft1124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MLLPPSGILFAERRLGEAWVLRCHGRHDPLSDRTQQGRIGAALPNTTSVG
GAAAF

mRNA from alignment at Scaffold_361:22446..25656+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1124_5a-0001 ID=EsuBft1124_5a-0001|Name=EsuBft1124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3211bp|location=Sequence derived from alignment at Scaffold_361:22446..25656+ (Ectocarpus subulatus male Bft15b)
TTGTTGTTGTTGTTGTTCTCCCTATCGTCGTTGTTGTGACTGCTCGCCTC
GTGATGCTGCTGCCCCCCTCTGGTATCCTCTTCGCCGAGAGGAGACTCGG
AGAAGCGTGGGTCTTGAGGTGTCATGGCAGACACGATCCCCTTTCGGATC
GGACACAGCAGGGGAGGATCGGAGCCGCGCTCCCCAACACCACGAGCGTC
GGAGGAGCGGCCGCGTTCTGAGGCACGGTCTCAGCGTCACCGTTGCCAAC
TTCAGGTTTTCTTCCCTCGCCGGTTTGAGCTCTTCTCTCTTGGGCAGCAG
GCCGCTCAACAACCAAGCAGAGGCATCGTTTTCTGTTTTCTTTCGCGCGT
TTTGAAAAAATTGAGAAAAAAAAGCCCGGGGATAGGGGTTGCCAGAGGAG
ATCTGCGCGCCATGCACGCATCACCAACCCGCGAAAAACTTCGGCAGGCG
GGGCGGCTGAACCCCTCTCGAGCTCTTGCCATGAGGCATGCACCGTACAG
GAGCTCGTCAGTCCAAGGTCGGAGTTCTTCAGTTAGAGAGGCAAGGCCGC
CGCAGGGTAGATATGCAAGTGTCAACAAAAAAAATAAAACATGTGTGTCC
AGAGTGTCTAGCAGGATCCGTGTGGTCGGTAACATGTGACGATGTAAGAG
CTCTCTCGTTCTCCCCGCCTCTTTCTCGATCGTCAATCCATAGCCATTGT
AACATGTTTGATTCGATGACCAGGAGAGTTGACATCGGGGTCACCCATGG
CCTGTTTTGCTTTCGCGCATCCATGTGCTCAGTAGTCATCACGCCGGCGT
TTCGGCAAGATTTATCTGACGAGCATGTGTAACTGCTGTTGTCATCTCCG
CCGTGCCATGCAGTAGAAGCGTGCGGCAGGATAGGGAAAGTAGCCAAGAT
GGGATAGGCATGATTTCATCACACCTTTGCGCCAATACCATTGGCTTTGG
GTGCAACTTTACGGGAAGCCGTCGCATCGCTGTGGTGCAAAAAGCGCTGT
TTGTTGTTGATTGAGGTGAAACAGGTTCAAACATGCAAACATGACTTGAT
GACCCGGTGTTTGACGCCTCGTTGGTTGCAGACCCCTGCGAAGCACGCGT
AGGTAATCATTATATGGGTAGCAAGACGACCCTCATGAATACCAGTGAGT
ATGCCATGTTGTTGCAAAATCGACGGGATTCGTGTCAAAAGGATTTCAAC
CGCACGACTTTCGTCCTTCATTTTCCCTTGCTCGACCTGCGTGCAAGCAA
GCGCTTCCGGCCTAGGCTAAAAAACAACGCAATACGCTCGACATCCCTTC
CTGTCTTCTTCTGGAAGTTGTTGTTGCCTGCCGCACACCGTGGTGCATTC
TGAACAGAAAGGGAAGGGGGTGAGGACAAGGAGAGGGCGACCTCGTTCGT
AGCAAAGTGGAGCCTGGGTGGACACCAGCAGCTAGCTGCAGTGCGTCACG
TCTACTAGCGAAGTCTAACACCCAGTCTTCATCTTATAAGATCGATCATC
TGCTTCCATCACCGGCAGTTGTTGGCATGCACGAGGGGCGTATCAGCAAT
GATTCTCTAGTAATTTTCAGTTTTCACGAGCGAGCTTTCCCTTCTTCGGT
TAGACATCGACGCAGACGAGAGAGACGGATGTGTCCGACTGCAGAAAAAA
GGGTTGAGGGCACAACACGTCCAACAACGTTTGATAGGGGAACCCAGACT
ACAGCAGTACATTAAACGTCCTTACAATAGCCAACTCTGCTGCTCTGCTG
TTATTCGATACCAGTAACAAGTGTCGCCTGGACTGATCAGCTTTTATCGG
CTTACTTTTGGTGAGCTTCAGTTCGATGCGTTTTTGTTGATGATGTCATG
ACGCCCTCTGCAAATGTGGAGCAGGACATCCCGCTGGTGATCGGACTGAG
AAGGAATAGTCTAGGTAGTGTCATGGCTGTTGTGTGATAACTTTTATGCA
TCCCCGATTCCCGGAATGCGAAGAACGCCTGCTTAGCGTTCCGCCATCAC
TACTCCCCCCCGTTCCTCGACTTCGTAAGCATGTTGAACTACAATAATAT
AATGATGGCTGGCTCCTTGTTTCTGTCGCAACCCTGAGTAGCTTTTTGTC
AACGCACACGTTGGAAATAGGAAATACAGCGGAAGCAACAACAGCAGGAC
AAACAGGTACAAATATCGGTCGTAGCAAACATGATCGACGGGCCAAACAG
GGATTGCATGAAGCACGTCCAAGACCGAGCTTTGATGTGGATGTACATAG
GTCGAGTGTTTACCAATGATGGCCTACTACAGCACACGCAAATATTGGGC
GAATGAATGCATGCAGTTCAGGGAAAAGTAGGGATGACATCACTGTGTAG
ACAGTTCGGAATGCGAGATGCGCCGGGCTGGCTGTCGATGGCCTCTACCG
CACGTACGCCTGTTCCGTAGCGGGTCGTGCTTCGCTCCAACGATGGGTAG
AATGAACAACCGTCTTCTCGGATGGAGGCCAAAGGTTGGTACACTTGAAC
TATAATTCTCGCTGCCAAGGATCGCGTAGCCGTGCACGTACCCGGAGTGC
ATGCACTGCCAGATGCCACATGCATACGTACAGCTTCGGCCGCGGCAGCA
CAAAAGTGAAACTGAGTGATAACAAGAAACAGCATCGATCGTGCCACCAA
ATGAAGGCACTTTGTGCTCACGCACGCTATGTGCTGCTTGTTTTAAGAGT
TTACTGGGAGAGATGACACCCCTGGAAAATATTGCTACTTGTTTCCCTAT
CATCACGATTACCCACAACGCACCCTATCGCACAGTACACTCGTTGATAC
AACCAACAGAACACCACACTTGCGCGTAAACTTGCTGTTGGTGACTTGGC
GCTACACCAGTAGAATCTACTACTTCACCAGAATCACAAACAGCATGACA
GCACCAACCAGTAGCACGCGTATCCGCCCGTCGAACGTGCGCCATCATGT
GCTACACGAAACCAAACCTATTCACTATTCACACACCCCGGACCGGAGGA
GGAGAGGGCTGGTGACAAAAACGAGCGAATCTACACGAAAATTAAAGCCC
ACCCAAAAATTCGAACACTAAGCGACCTGCGAGCAAAAAGAAGCCATGAA
GAAGCACGCGACCGACCTCGACGCATACAACCTCGCTCGAAGCCACTCCC
TCTGATTGGCAATCTGTCACAAACATAACTCATTGTCTCGCCCCCCCCCA
CCCCGCTCCCC

Coding sequence (CDS) from alignment at Scaffold_361:22446..25656+

>EsuBft1124_5a-0001 ID=EsuBft1124_5a-0001|Name=EsuBft1124_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_361:22446..25656+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGCCCCCCTCTGGTATCCTCTTCGCCGAGAGGAGACTCGGAGA
AGCGTGGGTCTTGAGGTGTCATGGCAGACACGATCCCCTTTCGGATCGGA
CACAGCAGGGGAGGATCGGAGCCGCGCTCCCCAACACCACGAGCGTCGGA
GGAGCGGCCGCGTTCTGA