EsuBft1124_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1124_3a-0001
Unique NameEsuBft1124_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_361contigScaffold_361:5863..7359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1124_3
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1226
Evalue7.64e-90
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_3aEsuBft1124_3aEctocarpus subulatus male Bft15bgeneScaffold_361 5863..7359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_3a-0001EsuBft1124_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_361 5934..7359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_3a-0001-exonEsuBft1124_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_361 5863..6004 +
EsuBft1124_3a-0001-exonagat-exon-56906Ectocarpus subulatus male Bft15bexonScaffold_361 6047..6481 +
EsuBft1124_3a-0001-exonagat-exon-56907Ectocarpus subulatus male Bft15bexonScaffold_361 6622..7231 +
EsuBft1124_3a-0001-exonagat-exon-56908Ectocarpus subulatus male Bft15bexonScaffold_361 7321..7359 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_3a-0001-exonagat-five_prime_utr-739Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_361 5863..5933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1124_3a-0001-cdsEsuBft1124_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_361 5934..6004 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1124_3a-0001 ID=EsuBft1124_3a-0001|Name=EsuBft1124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1226bp|location=Sequence derived from alignment at Scaffold_361:5863..7359+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCATATCCTCGAGGAGGACCGTTGCAGGCCGAGCACCTCACCCCTCTGC
AGTACCTGGAACCCCACACGAATGTCCCTCGCCCCAACATCTGCAAGTGG
GTCAAGGCGGAGAACGAGATCGTGGCGGGCGACGCAAACGAACATTAGTA
AGGGCCAGGCAGGTTTTCGAAAAAAGAGGGGGTGCTTAGACCACGTATTC
ACGGTGGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTA
CTGCTTCTTCCTGGACGTGAAGAAGGCATACGACACAGTATGGAGAAATG
GGCTGTGGAAACAATTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGA
GTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGCCATGTTAGACGG
AGAGCTGTCTAGATTCCTCGACATTGAGCAGGGGGTCCCACAAGGTTGCG
CGCTGTCCCCAACATTGTTCCATGTGTTCATCAACGATCTGTTGCAAGTC
GTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGT
TTCAGGAATGCTGTTTGCGGANAGAAGTNCATTGGAGTTCCAACCCCTAC
GGTCGGGAAGAGACGCGAGGAAGTTGACATGGCAGTATCGCATGTGCGGG
ATGGGAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAA
CAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACG
TATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGA
ACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATG
GATGCAGGAACAACAAATAAGGTCAAATTCAGGACCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGACGAAGTCGACGAGT
TCAGCTGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
AATTGTCAGTGGTACAAGAAGGAGAGGGAAGTAGTGTACGTGACTGAGCT
GGAAAAAATAGATGGGACGTACAGGGAGATGTTTGAGACTAGGGAAGACA
TTTTTGAGCCACCTTTGGCAAAGTAG
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protein sequence of EsuBft1124_3a-0001

>EsuBft1124_3 ID=EsuBft1124_3|Name=EsuBft1124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=384bp
MSLAPTSASGSRRRTRSWRATQTNISKGQAGFRKKRGCLDHVFTVGRIIQ
GRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVLKKMTE
CTKSAAMLDGELSRFLDIEQGVPQGCALSPTLFHVFINDLLQVVEAVRKG
VKVGDTETSVSGMLFAXRSXLEFQPLRSGRDARKLTWQYRMCGMGEERLP
RIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEK
ISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTTNK
VKFRTGDIGLRERRRRHRTVDDEVDEFSCDCGFECEDRVHVVANCQWYKK
EREVVYVTELEKIDGTYREMFETREDIFEPPLAK
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mRNA from alignment at Scaffold_361:5863..7359+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1124_3a-0001 ID=EsuBft1124_3a-0001|Name=EsuBft1124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1497bp|location=Sequence derived from alignment at Scaffold_361:5863..7359+ (Ectocarpus subulatus male Bft15b)
TGCATATCCTCGAGGAGGACCGTTGCAGGCCGAGCACCTCACCCCTCTGC
AGTACCTGGAACCCCACACGAATGTCCCTCGCCCCAACATCTGCAAGTGG
GTCAAGGCGGAGAACGAGATCGTGGCGGGCGACGCAAACGAAGTGAAGTA
GACGCTACTCGCGAGTATTGGAGAAGGAACATAGCATTAGTAAGGGCCAG
GCAGGTTTTCGAAAAAAGAGGGGGTGCTTAGACCACGTATTCACGGTGGG
GAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCT
TCCTGGACGTGAAGAAGGCATACGACACAGTATGGAGAAATGGGCTGTGG
AAACAATTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAA
GAAGATGACAGAGTGTACGAAAAGCGCGGCCATGTTAGACGGAGAGCTGT
CTAGATTCCTCGACATTGAGCAGGGGGTCCCACAAGGTTGCGCGCTGTCC
CCAACATTGTTCCATGTGTTCATCAACGATCTGTTGCAAGTCGTAGAGGC
AGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAA
TGCTGTTTGCGGANAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGA
AAGCAGCGAAAATCATCCTAGGATGCTCCAAGCGCACAAGTATTGCAGGG
CAGAATTGGGGTTCCAACCCCTACGGTCGGGAAGAGACGCGAGGAAGTTG
ACATGGCAGTNCATTGGAGTTCCAACCCCTACGGTCGGGAAGAGACGCGA
GGAAGTTGACATGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTG
CCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACA
ACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACA
TCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAACAAAT
AAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAG
ACATAGGACGGTAGACGACGAAGTCGACGAGTTCAGCTGTGATTGCGGCT
TCGAATGCGAAGACCGTGTTCATGTAGTCGCGAATTGTCAGTGGTACAAG
AAGGAGAGGGAAGTAGTGTACGTGACTGAGCTGGAAAAAATAGATGGGAC
GTACAGGGAGATGTTTGAGGTATGGAATAGAGAGGAAAGGACGGTAGCTG
TACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGG
ATAGACAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAG
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Coding sequence (CDS) from alignment at Scaffold_361:5863..7359+

>EsuBft1124_3a-0001 ID=EsuBft1124_3a-0001|Name=EsuBft1124_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1155bp|location=Sequence derived from alignment at Scaffold_361:5863..7359+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTCGCCCCAACATCTGCAAGTGGGTCAAGGCGGAGAACGAGATC
GTGGCGGGCGACGCAAACGAACATTAGTAAGGGCCAGGCAGGTTTTCGAA
AAAAGAGGGGGTGCTTAGACCACGTATTCACGGTGGGGAGAATCATCCAA
GGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAA
GAAGGCATACGACACAGTATGGAGAAATGGGCTGTGGAAACAATTGTCCA
AATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAG
TGTACGAAAAGCGCGGCCATGTTAGACGGAGAGCTGTCTAGATTCCTCGA
CATTGAGCAGGGGGTCCCACAAGGTTGCGCGCTGTCCCCAACATTGTTCC
ATGTGTTCATCAACGATCTGTTGCAAGTCGTAGAGGCAGTCCGGAAGGGA
GTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGA
NAGAAGTNCATTGGAGTTCCAACCCCTACGGTCGGGAAGAGACGCGAGGA
AGTTGACATGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCG
AGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACC
CACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCG
ACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAG
ATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATC
CAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAG
GGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAACAAATAAG
GTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACA
TAGGACGGTAGACGACGAAGTCGACGAGTTCAGCTGTGATTGCGGCTTCG
AATGCGAAGACCGTGTTCATGTAGTCGCGAATTGTCAGTGGTACAAGAAG
GAGAGGGAAGTAGTGTACGTGACTGAGCTGGAAAAAATAGATGGGACGTA
CAGGGAGATGTTTGAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAA
AGTAG
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