EsuBft982_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_3a-0001
Unique NameEsuBft982_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:409886..413648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LF87
ProteomeIdEsuBft982_3
Protein domainsIPR000008
Ownerapollo_admin@sb-roscoff.fr
Nb exon8
Max annot lvl2759|Eukaryota
Length124
Hectar predicted targeting categoryother localisation
Evalue2.22e-170
EggNOG OGsKOG1030@1|root,KOG1326@1|root,KOG1030@2759|Eukaryota,KOG1326@2759|Eukaryota
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-01_004030.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K19949,ko:K22125,ko:K22127
Descriptionplasma membrane repair
COG categoryS
BRITEko00000,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_3aEsuBft982_3aEctocarpus subulatus male Bft15bgeneScaffold_360 409886..413648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_3a-0001EsuBft982_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 409895..413648 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_3a-0001-exonagat-exon-72924Ectocarpus subulatus male Bft15bexonScaffold_360 409886..409947 +
EsuBft982_3a-0001-exonagat-exon-72920Ectocarpus subulatus male Bft15bexonScaffold_360 410341..410496 +
EsuBft982_3a-0001-exonEsuBft982_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 410831..411482 +
EsuBft982_3a-0001-exonagat-exon-72922Ectocarpus subulatus male Bft15bexonScaffold_360 411641..411650 +
EsuBft982_3a-0001-exonagat-exon-72921Ectocarpus subulatus male Bft15bexonScaffold_360 411862..411953 +
EsuBft982_3a-0001-exonagat-exon-72925Ectocarpus subulatus male Bft15bexonScaffold_360 412733..412870 +
EsuBft982_3a-0001-exonagat-exon-72923Ectocarpus subulatus male Bft15bexonScaffold_360 413213..413335 +
EsuBft982_3a-0001-exonagat-exon-72926Ectocarpus subulatus male Bft15bexonScaffold_360 413637..413648 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_3a-0001-exonagat-five_prime_utr-15482Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 409886..409894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_3a-0001-cdsEsuBft982_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 409895..409947 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_3a-0001 ID=EsuBft982_3a-0001|Name=EsuBft982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1245bp|location=Sequence derived from alignment at Scaffold_360:409886..413648+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCATCAAAATGGAGTTGCAGCTCCCGCTCGATTTCATCTACGCCCCGCG
TGTAAAGATCAGGGTATACGACACTCGGCTTGGAGGGTTCAACGTGCCCC
TTGTGGGGACGGGTCGGATTGAGCTCGGGAAGAAGCTGCCGTGGAGCCCG
GAGTACGAGGCGCCCCTGGCCAAGACATTCGCAAAGGACGACCTGCTGCG
GGCCATCACGGCGAACGGAAACGATTCCACCTCCGGCGGCAACGACAACA
ACGACCCGTCGGCACGCGGCAGCGACGCCGGCGGCGGCCTCGGCGGCCTC
GGCGGCGGCTCCGCCTCCCACCGTCGCGGCGGCCTGCAATGGGGCAGCTC
CGGCGACTATGGGAGCGACGCCGAGATGTCCGACTTCGAGGGAGAGGCCT
CCGTCTTTGGGGCCGGCGGCGGCGCGAAGTCCGAGTTCGGCGGCGGAAGG
TCAGGGTTCGGCGCCTCCCTTACCGGGGGAAGCACCTCTACAAACCAGGC
CGGTAGCGGTGGGCGCACCAGCACGAGGGCCTTCGGCGGCCCGGCGAGCG
GCGGAGGCCACCGGCAGGCCCGTAGCAGCCGGTCGCGGTCACGCAGCGAC
TTCGGCGGGGGCGGCGGCGGCGCCCTGGGCGTGATGCGGCAGTCGAGCTG
GAACAAGAGCGGCACCATAGACAACTCGCCGCAGCTCAACGCCAGCGGGA
AGGTGATCGACACCGGCATCGGCGTCATGCCCGCTCTCGAGCTCGCGCGA
CAGGAGGCCGGCCTCGGCGTTGGGTCCATCCCGGGCAGCCAGCTCTTGAC
GCCGGTGGGCGGCGGGGCTGGCGGGGCGCTGGGGGACACTGGGGGCTTCG
GCGGCGGGGGGGGGGGCAGCGTGGGAGGAGAGGAGGAGCTGATGGCGACG
CCGTTCGAATCGTACGATCTCTTCCGGGGGAAGCTGCTTGGCGGCGGAAT
CGGCGGCAGCACCCTCAAGAAGGTGGGCAAGCTGAAGTGCATCGTGAGGG
TTACCGAGGGAGACCCCGACGACGAGCCGCTGTTCGTGAACAAGAAGAGC
TTCCCGACCCTTGCCAAGGCCAAGGCCAAGAACGACATCATCCTCGCGGA
GCTCCTCAAGCCGAAGGGGTACAAGGTGAGGCTGTACGTCCTGCAAGCCC
TGAACCTGACCGCGATGGACGTCGGCATCGGCGGCAGGCCTGGCAAGTCT
GACCCTTACCTCAAGGTCAAGCTGGGCAAGGAGGTGTCAACGTAA
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protein sequence of EsuBft982_3a-0001

>EsuBft982_3 ID=EsuBft982_3|Name=EsuBft982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=411bp
MELQLPLDFIYAPRVKIRVYDTRLGGFNVPLVGTGRIELGKKLPWSPEYE
APLAKTFAKDDLLRAITANGNDSTSGGNDNNDPSARGSDAGGGLGGLGGG
SASHRRGGLQWGSSGDYGSDAEMSDFEGEASVFGAGGGAKSEFGGGRSGF
GASLTGGSTSTNQAGSGGRTSTRAFGGPASGGGHRQARSSRSRSRSDFGG
GGGGALGVMRQSSWNKSGTIDNSPQLNASGKVIDTGIGVMPALELARQEA
GLGVGSIPGSQLLTPVGGGAGGALGDTGGFGGGGGGSVGGEEELMATPFE
SYDLFRGKLLGGGIGGSTLKKVGKLKCIVRVTEGDPDDEPLFVNKKSFPT
LAKAKAKNDIILAELLKPKGYKVRLYVLQALNLTAMDVGIGGRPGKSDPY
LKVKLGKEVST
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mRNA from alignment at Scaffold_360:409886..413648+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_3a-0001 ID=EsuBft982_3a-0001|Name=EsuBft982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3763bp|location=Sequence derived from alignment at Scaffold_360:409886..413648+ (Ectocarpus subulatus male Bft15b)
CGCATCAAAATGGAGTTGCAGCTCCCGCTCGATTTCATCTACGCCCCGCG
TGTAAAGATCAGGTGAGAGTAAAATTGGTCCGAAACCAACGTCACTCGAT
GCCGCAAATCGCCATGCTGGTGTCGATACCGTCCCCCCCGCCCCCCCCGT
TCTTGATCCGAGACTTGAAGAAGCGGCGGCGCCAAGTGGGACTCTGTTAT
TTGCTGTGTCTTCCTGTTGGCATTCTCTGTCTTACCCTCCCTGCCTGGCA
TCCTGTGAATAGTAATATTTATCTTCTTGACAACGAAGCGAAACCGTTGC
TCGTTGAGGAAAGGGTGGATGCGAAATATACCAAAGATAGAATTGAGATG
CAATGGACGAAGCAGCAAGCTTGCGTCAACGCCCCCCCGCTCCTGCAGAC
AACTATGATATTGCGTGTCCCCCCACCCCCACTGTGTTCCACACTACTTC
CTAAGGGTATACGACACTCGGCTTGGAGGGTTCAACGTGCCCCTTGTGGG
GACGGGTCGGATTGAGCTCGGGAAGAAGCTGCCGTGGAGCCCGGAGTACG
AGGCGCCCCTGGCCAAGACATTCGCAAAGGACGACCTGCTGCGGGCCATC
ACGGCGAACGGGTTAGTCGGTGAATGCGTCCTATTCTTGTAGTCTGTGCC
TGTGGTGCTTCGAAGCGTGTTGTTTTAGTATGTAGGCAAGCGTGAAGGAT
TCACAGCGGTTTGATCGATTTGTGGCATCGTTGACACGAGTCATCGACCA
ACCAAAAGCGCAGTCCAGCTTCTACTGTGTGCCCGCTGCCCCCCCCCCCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGCCCGCTGCCCCCCCCCCCCCAAACACTCAAGAGTGTTTC
TAAACGCACACCTCGCTCTCCACCCCTGTTTCATCGCGCGCGCAGAAACG
ATTCCACCTCCGGCGGCAACGACAACAACGACCCGTCGGCACGCGGCAGC
GACGCCGGCGGCGGCCTCGGCGGCCTCGGCGGCGGCTCCGCCTCCCACCG
TCGCGGCGGCCTGCAATGGGGCAGCTCCGGCGACTATGGGAGCGACGCCG
AGATGTCCGACTTCGAGGGAGAGGCCTCCGTCTTTGGGGCCGGCGGCGGC
GCGAAGTCCGAGTTCGGCGGCGGAAGGTCAGGGTTCGGCGCCTCCCTTAC
CGGGGGAAGCACCTCTACAAACCAGGCCGGTAGCGGTGGGCGCACCAGCA
CGAGGGCCTTCGGCGGCCCGGCGAGCGGCGGAGGCCACCGGCAGGCCCGT
AGCAGCCGGTCGCGGTCACGCAGCGACTTCGGCGGGGGCGGCGGCGGCGC
CCTGGGCGTGATGCGGCAGTCGAGCTGGAACAAGAGCGGCACCATAGACA
ACTCGCCGCAGCTCAACGCCAGCGGGAAGGTGATCGACACCGGCATCGGC
GTCATGCCCGCTCTCGAGCTCGCGCGACAGGAGGCCGGCCTCGGCGTTGG
GTCCATCCCGGGCAGCCAGCTCTTGACGCCGGTGGGCGGCGGGGCTGGCG
GGGCGCTGGGGGACACTGGGGGCTTCGGCGGCGGGGGGGGGGGCAGCGTC
ATNGGGGGGGGGGGGGGGGGGCAGCGTCATGGGAGGGGGGAGCATCGCGG
GAGCGCTGGGGCTGGAGGAGACGACTGGGTGGGACGAGGAGGATGACGAG
CTTTCTCAGGTCCCCCAATACCTCAAGGGCCGCGAAGAGCTGGAGCAGTC
GCTAGGTGGGAGGAGGTTTGAGTTTTGGATTTTTGTGTGGAGAGAGCAAC
AAGAGGTTGCGCTGTCCGCTGCTGCGCCGCAATAGAGCGAGGTACCGCGG
CAATACTCTACACTGCTCTGCGTCGTCCCCACTGCGCCCGGGACAATGCT
CTTCCCACCCCAATGAGCGTTTTTTTTTTTTTTCGTCCTGTATGTCTTTT
TTCTTTTCTGCTCTAAATTAACTCAGAGGAGGAGCTGATGGCGACGCCGT
TCGAATCGTACGATCTCTTCCGGGGGAAGCTGCTTGGCGGCGGAATCGGC
GGCAGCACCCTCAAGAAGGTATTATCTAGAAGCGGCCACCAACACCACAA
ATCCGCTCAAGGGTGTTGGTTAGGTGTCGTCGTCAGCAGCAGAAGCAGCA
GCTGGTTGGTTGGCTGGAGCGTGATCGAGCGAAAGAGTCTATGTGCCCTT
TCGTTTGCCATGAGCTAAACATTGTCCGAGAGGGCATTCGTTGACTATTG
GAGAGTTTGGCGTCGAGCAAGCTATGGCTTTGACGGCGTCCAACTCATGC
GAAGCTCGACCAGGAGGCCCCAATAGAGCAGTTGTTGACCTATCTTCCCT
CGGTCGTGCGTCGTTCGTGTTTTCCCGAGTCATCCGAGGGAGTGGTTACG
TTGCCGAGCCAATCCGTGGTATATTCAACGTGATTGCTATCTTGTAGAGT
CGGCTGGCTCTCAGGCTGTGTACCGAGTGTGGGTCAGCTGCTACGGTTTT
GAGCGCCCTTTCTGTTCCGTTGCCGACCTTCACCACCCCTCCTACTTCCG
CGAACCCTGATTCGTTTGTCTCCTTTTCCAACGTGCCGTCGCGCACAATA
AACGGCCCACGAGTGCACGGCCAATCGTGGAAGGCTGGTGACGATTACGC
GCGCGAATCGATTGCGCTGCCCCTGACGTCATATCACCTATGTTTTTTTG
CCCGGTACGCACAATTTATATACGAACCTCGCACACGCGCCCTCCCCCTA
AACAAACACACGCACGCATGTAAATTTGTAGCTATTCATAGCTGCTGCTG
TCCCTCGCTCTCTGTATTCGTAAACGCATTCCCCTCCTCCAAAAAAGGTG
GGCAAGCTGAAGTGCATCGTGAGGGTTACCGAGGGAGACCCCGACGACGA
GCCGCTGTTCGTGAACAAGAAGAGCTTCCCGACCCTTGCCAAGGCCAAGG
CCAAGAACGACATCATCCTCGCGGAGCTCCTCAAGGTAACGGTAGCGGTA
ACGGTAGCGGTAACGGTATCGTTTATTTGTGGTTCTCTTGTTACGTTGTT
GTTGTTGGCGCTGGCTTGTTGTGTTGGATGTCTAGAAAACGCAGGCCGAG
GGATGGTGGATCGCTGAAGGAGAGGAGACCACGGCTTCTGTAGCACATGT
CGCGCACGTTAGAAGAAGGTGTCCCGCACACGCTAGTCATAACGCTGTCG
CTGCCTCTACTTTCCTCGCACCACACCGCATCCCTACGCACACACGCACG
AGAGACTCCCACGTGTCGTTCACCAGCCGTCATCCCGTTGTGGTTGTTCG
TTGTTATCGGTTTTTGCCGTTGAACAGCCGAAGGGGTACAAGGTGAGGCT
GTACGTCCTGCAAGCCCTGAACCTGACCGCGATGGACGTCGGCATCGGCG
GCAGGCCTGGCAAGTCTGACCCTTACCTCAAGGTCAAGCTGGGCAAGGAG
GTGAGAGGGAAACGCCGGTTGCGGATAAAGTGCAAACATTTGTATTAAAA
TACTCAAGAAGTAGAGGCGAAAGAAAAGAGAAAGAACAGATGCATGGCTC
CTTTTCGCACTCAAGCCTGATGCTTGCTGTGATGCAAGCCTTGAACCACC
GACGGCCTCTTGTTTAGTCACTCCAGTCGTTCGGTGTTTTGCGCAAGGGA
CGTGTGCCCCCCCCCCCCCCGCACGCGCCCTGAGACGGTACTTATTGCTG
CTTTTTTCTCCGCGGCCTTTACTTTATTGGTTTTCTACACCTTGATCACA
GGTGTCAACGTAA
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Coding sequence (CDS) from alignment at Scaffold_360:409886..413648+

>EsuBft982_3a-0001 ID=EsuBft982_3a-0001|Name=EsuBft982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1236bp|location=Sequence derived from alignment at Scaffold_360:409886..413648+ (Ectocarpus subulatus male Bft15b)
ATGGAGTTGCAGCTCCCGCTCGATTTCATCTACGCCCCGCGTGTAAAGAT
CAGGGTATACGACACTCGGCTTGGAGGGTTCAACGTGCCCCTTGTGGGGA
CGGGTCGGATTGAGCTCGGGAAGAAGCTGCCGTGGAGCCCGGAGTACGAG
GCGCCCCTGGCCAAGACATTCGCAAAGGACGACCTGCTGCGGGCCATCAC
GGCGAACGGAAACGATTCCACCTCCGGCGGCAACGACAACAACGACCCGT
CGGCACGCGGCAGCGACGCCGGCGGCGGCCTCGGCGGCCTCGGCGGCGGC
TCCGCCTCCCACCGTCGCGGCGGCCTGCAATGGGGCAGCTCCGGCGACTA
TGGGAGCGACGCCGAGATGTCCGACTTCGAGGGAGAGGCCTCCGTCTTTG
GGGCCGGCGGCGGCGCGAAGTCCGAGTTCGGCGGCGGAAGGTCAGGGTTC
GGCGCCTCCCTTACCGGGGGAAGCACCTCTACAAACCAGGCCGGTAGCGG
TGGGCGCACCAGCACGAGGGCCTTCGGCGGCCCGGCGAGCGGCGGAGGCC
ACCGGCAGGCCCGTAGCAGCCGGTCGCGGTCACGCAGCGACTTCGGCGGG
GGCGGCGGCGGCGCCCTGGGCGTGATGCGGCAGTCGAGCTGGAACAAGAG
CGGCACCATAGACAACTCGCCGCAGCTCAACGCCAGCGGGAAGGTGATCG
ACACCGGCATCGGCGTCATGCCCGCTCTCGAGCTCGCGCGACAGGAGGCC
GGCCTCGGCGTTGGGTCCATCCCGGGCAGCCAGCTCTTGACGCCGGTGGG
CGGCGGGGCTGGCGGGGCGCTGGGGGACACTGGGGGCTTCGGCGGCGGGG
GGGGGGGCAGCGTGGGAGGAGAGGAGGAGCTGATGGCGACGCCGTTCGAA
TCGTACGATCTCTTCCGGGGGAAGCTGCTTGGCGGCGGAATCGGCGGCAG
CACCCTCAAGAAGGTGGGCAAGCTGAAGTGCATCGTGAGGGTTACCGAGG
GAGACCCCGACGACGAGCCGCTGTTCGTGAACAAGAAGAGCTTCCCGACC
CTTGCCAAGGCCAAGGCCAAGAACGACATCATCCTCGCGGAGCTCCTCAA
GCCGAAGGGGTACAAGGTGAGGCTGTACGTCCTGCAAGCCCTGAACCTGA
CCGCGATGGACGTCGGCATCGGCGGCAGGCCTGGCAAGTCTGACCCTTAC
CTCAAGGTCAAGCTGGGCAAGGAGGTGTCAACGTAA
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