EsuBft982_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft982_9a-0001
Unique NameEsuBft982_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:355159..355571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft982_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length41
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9aEsuBft982_9aEctocarpus subulatus male Bft15bgeneScaffold_360 355159..355571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9a-0001-exonEsuBft982_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 355159..355571 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9a-0001-exonagat-three_prime_utr-23771Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 355159..355201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9a-0001-cdsEsuBft982_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 355202..355540 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9a-0001-exonagat-five_prime_utr-15487Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 355541..355571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft982_9a-0001EsuBft982_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 355202..355540 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft982_9a-0001 ID=EsuBft982_9a-0001|Name=EsuBft982_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=413bp|location=Sequence derived from alignment at Scaffold_360:355159..355571- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTTCCACCGCTTGGCGAATTGGTGAAGCACATGGGGTCGCTGACCATTC
CGATGCTTGCGGAAAGTGCCGGGGTCACCACGGAGGAGGCGGACTACTTC
CTCAACACGGGCTTCACGCCCGACGAAGTTCAGCCGGAAAGGGCCGTGGC
CATGATGGTGGTACTACTCGACGCAAGGCTTTGTATCCAGCGCGACGGAG
ACAGCGTCCAGCAGTACATGGATCGTCTTGGTGAAGAGGATTGTGAGCTG
CCCGGGTTTGATGGGTTTGACGAGTCGGTCATGTTTAAACTGCTCGAGCT
CTACGGCGTGGAAATGATGGACTCTCGCAGCCTGCCGGAATCGAATGGTT
TCACAGCAGATGGCACATAGAACGTGTTACGCCGGACAAGGTGCTTCAGG
TTACGAAGCGGGT
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protein sequence of EsuBft982_9a-0001

>EsuBft982_9 ID=EsuBft982_9|Name=EsuBft982_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MGSLTIPMLAESAGVTTEEADYFLNTGFTPDEVQPERAVAMMVVLLDARL
CIQRDGDSVQQYMDRLGEEDCELPGFDGFDESVMFKLLELYGVEMMDSRS
LPESNGFTADGT
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mRNA from alignment at Scaffold_360:355159..355571-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft982_9a-0001 ID=EsuBft982_9a-0001|Name=EsuBft982_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=413bp|location=Sequence derived from alignment at Scaffold_360:355159..355571- (Ectocarpus subulatus male Bft15b)
GGTTCCACCGCTTGGCGAATTGGTGAAGCACATGGGGTCGCTGACCATTC
CGATGCTTGCGGAAAGTGCCGGGGTCACCACGGAGGAGGCGGACTACTTC
CTCAACACGGGCTTCACGCCCGACGAAGTTCAGCCGGAAAGGGCCGTGGC
CATGATGGTGGTACTACTCGACGCAAGGCTTTGTATCCAGCGCGACGGAG
ACAGCGTCCAGCAGTACATGGATCGTCTTGGTGAAGAGGATTGTGAGCTG
CCCGGGTTTGATGGGTTTGACGAGTCGGTCATGTTTAAACTGCTCGAGCT
CTACGGCGTGGAAATGATGGACTCTCGCAGCCTGCCGGAATCGAATGGTT
TCACAGCAGATGGCACATAGAACGTGTTACGCCGGACAAGGTGCTTCAGG
TTACGAAGCGGGT
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Coding sequence (CDS) from alignment at Scaffold_360:355159..355571-

>EsuBft982_9a-0001 ID=EsuBft982_9a-0001|Name=EsuBft982_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_360:355159..355571- (Ectocarpus subulatus male Bft15b)
ATGGGGTCGCTGACCATTCCGATGCTTGCGGAAAGTGCCGGGGTCACCAC
GGAGGAGGCGGACTACTTCCTCAACACGGGCTTCACGCCCGACGAAGTTC
AGCCGGAAAGGGCCGTGGCCATGATGGTGGTACTACTCGACGCAAGGCTT
TGTATCCAGCGCGACGGAGACAGCGTCCAGCAGTACATGGATCGTCTTGG
TGAAGAGGATTGTGAGCTGCCCGGGTTTGATGGGTTTGACGAGTCGGTCA
TGTTTAAACTGCTCGAGCTCTACGGCGTGGAAATGATGGACTCTCGCAGC
CTGCCGGAATCGAATGGTTTCACAGCAGATGGCACATAG
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