EsuBft921_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft921_8a-0001
Unique Name	EsuBft921_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_360	contig	Scaffold_360:168661..172943 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4792.ETI53028
ProteomeId	EsuBft921_8
Protein domains	IPR027806
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	282
Evalue	4.25e-13
EggNOG OGs	KOG4585@1\|root,KOG4585@2759\|Eukaryota,3QI3U@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	nuclease activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a	EsuBft921_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_360 168661..172943 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a-0001	EsuBft921_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_360 169016..171294 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a-0001-exon	EsuBft921_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_360 168661..169088 +
EsuBft921_8a-0001-exon	agat-exon-2801	Ectocarpus subulatus male Bft15b	exon	Scaffold_360 169765..170000 +
EsuBft921_8a-0001-exon	agat-exon-2802	Ectocarpus subulatus male Bft15b	exon	Scaffold_360 170785..172943 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a-0001-exon	agat-five_prime_utr-15016	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_360 168661..169015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a-0001-cds	EsuBft921_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_360 169016..169088 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft921_8a-0001-exon	agat-three_prime_utr-23085	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_360 171295..172943 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_360:168661..172943+
coding sequence from alignment at Scaffold_360:168661..172943+

spliced messenger RNA

>EsuBft921_8a-0001 ID=EsuBft921_8a-0001|Name=EsuBft921_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2823bp|location=Sequence derived from alignment at Scaffold_360:168661..172943+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCTTCATCACACCACACCTAGGCAGCACCACCAACGCCCCAAACCGCT
TCCCGAGGCAACTCCACTACCATGGCTGAGCGCCGGAAGCGCCAGCATCC
CCAGGGGCCCGCAGCGCAACGTCGGGAGAAGCGCCGTCGAGGAGCAATCG
ACGAGGTCGGTGCAGCCCAGGAACACAGGAGATCTCTCACAGCCCTGGGT
CTTCTGTAGTGGCGGCGGGCGTGGTGGCAGCAGGAGAAGCTCATCGTGCC
CACTGCCCTCAGGAACGGGAGCCCATCTACGAGTCCAAGCGGCTTCCGCG
GGCCCAACACGAGGCGGACCTCAATAAACGGCAAGGCTGGCGGCGGTCGT
ACCGCATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCT
CCGCTGGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCTATCAACGG
CGCCATAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTG
GCGCTAGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACC
ACGTACCAGATCCTGTGGTCGGTGATCGACGCCATCAACAAGACGCCTGC
GGTTGGGGCATTCGACTTCCCCCTGACCGAGGAAGGCTGCATGCGAAATG
CCAACAGATTCGAGGGGAAGAGCACCGATGGCATTTTCTGCTGGGTCGTC
GCCGCCGTGGACGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAGGA
CACCGCCAACGTCATCGCGTACTACTCCGGCAACAAGTCCGCGTACGGCA
TCAACGTACAAGCGATGTGCACCGCCGACTACCGGTTCTGCGCAATGTCG
GCGATCTCTCCAGGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGATATGT
AAACGAGGAGAAGAGGGTAGAAAGAGAGAGTGGCCAGAGAGAGCAGAGGG
AGAGGAGAGTCGAAGACTCTCCGCTTCTCCTTTCGGCAAATGGCCATGGA
CTTCGGAAGAGACAAATCTCCGACGGTGCATTTCCTGTCACTCTCCCAGT
GACAAGATACCCCGATGGAGCTATATCTTCCTACACTTTGTATGTGCACT
CATGGTTGGTTATACTCCCGACAGGTGTCCTCCACATGTTCGACTTTTTT
TTTCCTAGTTAGGAGCGTATGAATCGAAAACGTTGTTTGTTGTCGTTGAT
ACAACTTGTAATGGTGTCTCTGCACCCCTGCATTAAATATTCGTCGCGTG
GGTGAAACATTGCTCCAGGTTGCAGACCTGAAGGAGACCCACACACACAC
TAAAAATTGGGGTCTTGTCGAATCCCATCGCGAACACATTCCTGCGCTTC
AAGTGAGCATGCGCGGAGACGGGAAAAATTGCAAGGCTCCAAATTTGCGG
AACCCAAGCGTGCCTCAGAGTTCCCGTCAACACCCAACGTAGTATTGGGT
TGCAAGAACAAGTCTTGCAAATAGGAAAAAACTAAACGATATGCATGTCC
GCAGATTGCCGGCACGGCAGGTTACCCGCAAGACAGCAATATCTTCGGCG
TTCTTCCACCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGGCATC
CTCTCAAAGTGTTGTTGCCAACCAAACAACCCACACGTCTCTGCGGAGGC
GCACGTATTATCCTAAAAAAACATGATGCAACGAATAGACGAAGACGTTG
ACTCAACCATGCCCAACTATAAAAATGAAAACTCCCCCCCCCCCTGGCCC
AAAAAAAAATAGAAGGCTACGACCCTCGCAGCAAGCAAGCCCTGCAGCAG
GGAGAGAAAAACAAAAAACGCGCCCTCGTGTTCGTTGAATACAGGCACAG
CAACTTGCCCGTGAACCACAACAGTCTCGGCGTTCTTCCACCGTATTTTT
TCGTTGATACTCCTTTGTTGCCGCAAGGCATCCTCTCAAAGTGTTGTTGC
CAACCAAACAACCCACACGTCTCTGCGGAGGCGCACGTATTATCCTAAAA
AAACATGATGCAACGAATAGACGAAGACGTTGACTCAACCATGCCCAACT
ATAAAAATGAAAACTCCCCCCCC

protein sequence of EsuBft921_8a-0001

>EsuBft921_8 ID=EsuBft921_8|Name=EsuBft921_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=273bp
MEKASFHKLVELLRPPLAVNAFFGALRSPINGAIAVEVRVAVALRILAGA
SYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNAN
RFEGKSTDGIFCWVVAAVDGLFIKAKAPCAKDTANVIAYYSGNKSAYGIN
VQAMCTADYRFCAMSAISPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_360:168661..172943+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft921_8a-0001 ID=EsuBft921_8a-0001|Name=EsuBft921_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4283bp|location=Sequence derived from alignment at Scaffold_360:168661..172943+ (Ectocarpus subulatus male Bft15b)
TGTCTTCATCACACCACACCTAGGCAGCACCACCAACGCCCCAAACCGCT
TCCCGAGGCAACTCCACTACCATGGCTGAGCGCCGGAAGCGCCAGCATCC
CCAGGGGCCCGCAGCGCAACGTCGGGAGAAGCGCCGTCGAGGAGCAATCG
ACGAGGTCGGTGCAGCCCAGGAACACAGGAGATCTCTCACAGCCCTGGGT
CTTCTGTAGTGGCGGCGGGCGTGGTGGCAGCAGGAGAAGCTCATCGTGCC
CACTGCCCTCAGGAACGGGAGCCCATCTACGAGTCCAAGCGGCTTCCGCG
GGCCCAACACGAGGCGGACCTCAATAAACGGCAAGGCTGGCGGCGGTCGT
ACCGCATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCT
CCGCTGGCAGTCAACGCCTTCTTCGGCGGTGAGTGTTGATGTGTAAATGC
AGCCGCCCACGGCCGGTATGCGTAAGGCTTCCTCTCATGTATACGTAGAG
AACAACGGGGAAGAGCAAGTCTAAAACCCAGGAGAAACACTACTGCTGTA
GTCTAGACTGCCTTGCTGTTTGCTATCTTCTAAAAAAAAAACTCCCTCAT
CGAAACATGCAGCCAGAGGGTATGCATACACGCAGCAGCACTTATTCTAC
AGCAGTAGGTACAGCAGTGTCTGCATATGCATACAGCAGCAGTCGTTGTA
TGGGAACGACAGGAAGGTACTATGGTGGCGCTGAAATAAGTTCAGCAGTA
TGAATAGAGCGTGCAACACACGCCGGCACCACCATACATACATTATACAT
GCCTCGTCGGGAGCCTACACAGGTTGTAGTATCCCGCAATGATAGCATAC
AAGAGTCGACACGTGCTCCTCATATGCATATTCGACGTTAGTTGTGTGTT
CCGTGACGAACACAGAGCCGTCTCACAACCCTAGTCGGGAGGTGTATTGT
GTATTGGGCCGGTACTCTGGCGAGTTTAACGATGACATGCGTCCTTTGAC
GCTGGCGATTGCAAATACACCCCCTATGACACTGGTACATATTTCCTGAC
CGACACACGCTCATCCTTTGAACATTATCTGGGCGTCGCTCCGAAACCCC
ACAGCACTGCGATCGCCTATCAACGGCGCCATAGCTGTAGAAGTCCGCGT
TGCCGTGGCGTTGAGGATCCTGGCTGGCGCTAGTTACTGGGATGTTGCCC
TCATGTTTGGCTTGTCGGTGCCGACCACGTACCAGATCCTGTGGTCGGTG
ATCGACGCCATCAACAAGACGCCTGCGGTTGGGGCATTCGACTTCCCCCT
GACCGAGGAAGGCTGCATGCGAAATGCCAACAGATTCGAGGTGAGGCCTA
ACGGTGGTCATTACTGCTGCTGCTGTGGGTTATTCTTGGCGACATTCTCT
TGACCAGCCGCGGGATGTCGTTTTTTTTTAATTACGGCTGGCGTTTCCAG
CCGTTTTAGTGTAGGGAGGCCTATACACAGCCTTCGNCGAGGTGAGGCCT
AACGGTGGTCATTACTGCTGCTGCTGTGGGTTATTCTTGGCGACATTCTC
TTGACCAGCCGCGGGATGTCGTTTTTTTTTAATTACGGCTGGCGTTTCCA
GCCGTTTTAGTGTAGGGAGGCCTATACACAGCCTTCGACGGTAACGCAAG
AAAAAAAATGTCGTCCCCGGCGGATACAAGTTCGGATTGTCATCGTGGTC
AGCATGCCTTTAATCGAAAAACAACCCCCGGGTCCCGGCCCAGGTCCCGG
GTGGTTCGCCAGCTGTTGGTCTTTGTACAAATGGTCTTTTTACAAATAAA
TGTTTTTTTTTGTGTCATCATTAGTATGCTGGCCGTGTTGGTTCCGCCCC
GCAACAGTGGCCCGGCAACTGCTTTTAGTCAACCACGTGGCTCTGAGATA
CCCTGGTACATTTTTACCGCTGAACCTGACGCAATATTAGGATTAGCAAA
CACGGTATGTGCACCGTTGCTGGTGATGGCGCCGTCGTACACGACATCAA
CCCACACAACGTACAGCCGAACGCAGTTTACCGAAGTTCGTCAACGTCCA
TCTCTCGACTAATTTTTTTCCCCTTCCCGGCACTGCTACTTTCCCGCCCT
CTTGTCTGCCGTCTATAAATGCAGGGGAAGAGCACCGATGGCATTTTCTG
CTGGGTCGTCGCCGCCGTGGACGGTCTGTTCATCAAGGCCAAGGCTCCGT
GTGCGAAGGACACCGCCAACGTCATCGCGTACTACTCCGGCAACAAGTCC
GCGTACGGCATCAACGTACAAGCGATGTGCACCGCCGACTACCGGTTCTG
CGCAATGTCGGCGATCTCTCCAGGCTCNNNNNNNNNNNNNNNNNNNNNNN
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CGTGATATGTAAACGAGGAGAAGAGGGTAGAAAGAGAGAGTGGCCAGAGA
GAGCAGAGGGAGAGGAGAGTCGAAGACTCTCCGCTTCTCCTTTCGGCAAA
TGGCCATGGACTTCGGAAGAGACAAATCTCCGACGGTGCATTTCCTGTCA
CTCTCCCAGTGACAAGATACCCCGATGGAGCTATATCTTCCTACACTTTG
TATGTGCACTCATGGTTGGTTATACTCCCGACAGGTGTCCTCCACATGTT
CGACTTTTTTTTTCCTAGTTAGGAGCGTATGAATCGAAAACGTTGTTTGT
TGTCGTTGATACAACTTGTAATGGTGTCTCTGCACCCCTGCATTAAATAT
TCGTCGCGTGGGTGAAACATTGCTCCAGGTTGCAGACCTGAAGGAGACCC
ACACACACACTAAAAATTGGGGTCTTGTCGAATCCCATCGCGAACACATT
CCTGCGCTTCAAGTGAGCATGCGCGGAGACGGGAAAAATTGCAAGGCTCC
AAATTTGCGGAACCCAAGCGTGCCTCAGAGTTCCCGTCAACACCCAACGT
AGTATTGGGTTGCAAGAACAAGTCTTGCAAATAGGAAAAAACTAAACGAT
ATGCATGTCCGCAGATTGCCGGCACGGCAGGTTACCCGCAAGACAGCAAT
ATCTTCGGCGTTCTTCCACCGTATTTTTTCGTTGATACTCCTTTGTTGCC
GCAAGGCATCCTCTCAAAGTGTTGTTGCCAACCAAACAACCCACACGTCT
CTGCGGAGGCGCACGTATTATCCTAAAAAAACATGATGCAACGAATAGAC
GAAGACGTTGACTCAACCATGCCCAACTATAAAAATGAAAACTCCCCCCC
CCCCTGGCCCAAAAAAAAATAGAAGGCTACGACCCTCGCAGCAAGCAAGC
CCTGCAGCAGGGAGAGAAAAACAAAAAACGCGCCCTCGTGTTCGTTGAAT
ACAGGCACAGCAACTTGCCCGTGAACCACAACAGTCTCGGCGTTCTTCCA
CCGTATTTTTTCGTTGATACTCCTTTGTTGCCGCAAGGCATCCTCTCAAA
GTGTTGTTGCCAACCAAACAACCCACACGTCTCTGCGGAGGCGCACGTAT
TATCCTAAAAAAACATGATGCAACGAATAGACGAAGACGTTGACTCAACC
ATGCCCAACTATAAAAATGAAAACTCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_360:168661..172943+

>EsuBft921_8a-0001 ID=EsuBft921_8a-0001|Name=EsuBft921_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=819bp|location=Sequence derived from alignment at Scaffold_360:168661..172943+ (Ectocarpus subulatus male Bft15b)
ATGGAGAAGGCCAGCTTCCACAAGCTTGTCGAGCTACTCCGCCCTCCGCT
GGCAGTCAACGCCTTCTTCGGCGCACTGCGATCGCCTATCAACGGCGCCA
TAGCTGTAGAAGTCCGCGTTGCCGTGGCGTTGAGGATCCTGGCTGGCGCT
AGTTACTGGGATGTTGCCCTCATGTTTGGCTTGTCGGTGCCGACCACGTA
CCAGATCCTGTGGTCGGTGATCGACGCCATCAACAAGACGCCTGCGGTTG
GGGCATTCGACTTCCCCCTGACCGAGGAAGGCTGCATGCGAAATGCCAAC
AGATTCGAGGGGAAGAGCACCGATGGCATTTTCTGCTGGGTCGTCGCCGC
CGTGGACGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAGGACACCG
CCAACGTCATCGCGTACTACTCCGGCAACAAGTCCGCGTACGGCATCAAC
GTACAAGCGATGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCGAT
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