EsuBft419_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft419_13a-0001
Unique NameEsuBft419_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:91780..95720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFA1
ProteomeIdEsuBft419_13
Protein domainsPF12783
Protein domainsPTHR10663
Ownerapollo_admin@sb-roscoff.fr
Notebrefeldin a-inhibited guanine nucleotide-exchange protein 1 os:homo sapiens gn:arfgef1 pe:1 sv: [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1446
Evalue3.32e-134
EggNOG OGsCOG5307@1|root,KOG0929@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Descriptionregulation of ARF protein signal transduction
COG categoryK
BRITEko00000,ko00001,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0032279
GO0034237
GO0034259
GO0030837
GO0005086
GO0055037
GO0030532
GO0048471
GO0001881
GO0006887
GO0005802
GO0000139
GO0005829
GO0007032
GO0007030
GO0008060
GO0043547
GO0050811
GO2000114
GO0031410
GO0043197
GO0032760
GO0005730
GO0005879
GO0005815
GO0006893
GO0090284
GO0017022
GO0032280
GO0090303
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft419_13aEsuBft419_13aEctocarpus subulatus male Bft15bgeneScaffold_360 91780..95720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_13a-0001EsuBft419_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 91780..95720 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_13a-0001-exonagat-exon-28366Ectocarpus subulatus male Bft15bexonScaffold_360 91780..92265 +
EsuBft419_13a-0001-exonagat-exon-28368Ectocarpus subulatus male Bft15bexonScaffold_360 92760..92967 +
EsuBft419_13a-0001-exonagat-exon-28370Ectocarpus subulatus male Bft15bexonScaffold_360 93213..93559 +
EsuBft419_13a-0001-exonagat-exon-28369Ectocarpus subulatus male Bft15bexonScaffold_360 94468..94554 +
EsuBft419_13a-0001-exonagat-exon-28367Ectocarpus subulatus male Bft15bexonScaffold_360 94914..95042 +
EsuBft419_13a-0001-exonEsuBft419_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 95532..95720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft419_13a-0001-cdsEsuBft419_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 91780..92265 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1446bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGGTGCAGCGGGA
CGCTTTGATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGC
GGACGCTGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCCAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGA
GGCCCCTGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGCTTAC
AAAATTTCTGCCCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTT
TTTTTTTGGGTGGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACG
CGCCAACCCAACCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGA
CGGCGGCGCTAGAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCT
AGGTTCCGCGCTCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTG
CGCGGCGCTGCTCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCC
TCAGCCTACGGGTGTTCGTTGCGCTGATCAAGGGGTTCAAGGACCATCTG
AAGGCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGA
GAGCGAGCACTCGGCGTTCGATCACAAGATGCTTGTTTTGGAAGTCATCT
CCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTCAACTAC
GACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCACAGCTTT
AGTCAAGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCA
AGAAGGACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGC
GCGGTGGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTT
GTACGGGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA
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protein sequence of EsuBft419_13a-0001

>EsuBft419_13 ID=EsuBft419_13|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=481bp
MTFSRLEMESPPPSIHGGQGQHASPSPKKRRTSAIEALLSPARRSELSPA
AAVEEEEAAKPSSETQSEDDDDGGVGGDGSDDPRNRLGGVLPGVLEVLAG
EDEGQEEPEQSEGGEGGERARLDEVSLAGGEGGRRKGREVGAGRRGGGSP
RLRVEGENVELTVVQRDALMLLSELCDWSLVDERTLSEELGGSGGGGGGG
GGQGDDDERPGDEVGAEAPGARDXESDTGKQGLQNFCPPRVSPYHHRPRV
FFWVGGSANTTAANAERANPTAIFSRAYVCKHKTAALELIVSVLQTYGGP
RFRALPAAATLVRGELCAALLHHCTSNVTGVVSLSLRVFVALIKGFKDHL
KAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLALVEMFVNY
DCDLQAIDLFKRIATALVKVAKGRAGSEGASASKKDLEQDRSLQLMGMGG
AVAMVSSMVKAADLEELYGDMAMVPRRGSAR
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mRNA from alignment at Scaffold_360:91780..95720+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3941bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGAGAATTCAAGA
GATGGGACAAGATGGGAGACAAGATCGAAGGAATGAGGGAGGTTCTTTAT
CTCGGCGCACGTTCTTGACCGTCCAACTGTTCGTTGACGATTTTTTTTCG
TTCGGTCATTTGTCGACGGTACTTTTTTCCGAACGGCGTGTCTGCCTACA
TGCTGCCAAAAGAGATGTGCATATGTCCACGAACAAACTAAGGCCCACTC
CCGGTCCAGCAACACTACTGGCGAGGGCCGCCACTCGACGAGCGTGTCGA
ATCAAGCGAACACTTCCAACTATTTACGTACTTCGGGTCTCTCAGAATGC
GTCACCCCCAACTCCCCCACGCTCCGTCCGCGCTGTTTTTTTTTTTTCCT
GTTTCTCTCGGGTTTATCACCCATTCGCTGCTGTTTGCCGCGACAACGTG
CGTGGAAGAAACGAAAAGACAACACGTGGTCTCGCCCCTGTTTCTTCTCC
TCGCGAAAACTCGACGCTGACAAACCTCAGGTGGTGCAGCGGGACGCTTT
GATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGCGGACGC
TGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
CAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGAGGCCCC
TGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGTAGACCTTTGT
TGTTGTGTTTTTATTTTTTTCGTTACAGGGAGTCACGGGAAGGATATACA
TAACTGCAAGCATTCTTGCGCATAGTTTCGGTTCGTTGTTGCGCTCGCCA
CGGTTCACGCTCGGAGGCTTACATAGCCTGTTGTCTTAGCTTCCTCTCTC
TCTCTCTCTTCAGCGCTCTTTCGTCGGTTATCTTCTCCCTCCCACCCCTG
GCCTGTTTTCTTTTTTCTCCTTTTGCCAAAAAGGCTTACAAAATTTCTGC
CCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTTTTTTTTTGGGT
GGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACGCGCCAACCCAA
CCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGACGGCGGCGCTA
GAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCTAGGTTCCGCGC
TCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTGCGCGGCGCTGC
TCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCCTCAGCCTACGG
GTGTTCGTTGCGCTGATCAAGGGGTTCAAGGTGCGACAACGGGCCGTTCA
AAGGCGATTATGGTCCCAGAGAAGTAGACAGGGGGGGGTTCGCGGGCGCA
TCAGTTGTAGTCATATTAGTCTTTGCAGGGATTTTCGTATTATGTAAACA
TGGATGAAGCATGCAATTGGGGAAGTTGTGTTAGGGTTACAAGAGGGTTA
GGGGATAGGGTCTGCGTCCCCCCCTCCCTGGTCCATCATCCTCGTATACT
TATCAATCGCGCGCAGGTGATCCGTTCTAGTGTATCGGCGGGGGGGGGGG
GGNGGGGGACTCTTCTTCGTCGATGGAGTATCCGGACCATAGGGTCCCTG
TCGTGGCACAAGCTGGGGTTTGATTCACCGAGGAAGGGGTGACGTCTTGC
TTGTTCTTTTGTGTATCGGCGAGGGATTGGGGTACGAGAGGATAGCATCG
CGGGATGCGGAGGCGTCGTCAGAATGGAGAGGGCGACGGACAACGGAGGG
TTATTGCTGGGGGGGATTTCGTAGTGTGTGATCCGAAGTTTTAGCATGAT
GTGCGCCATCCTCTGTGTAGGATGCTTTGGACGATAAAAGGCGTGCACGC
GTGTGTTGTGCTGCAGTGTGTGGTGAGGTGCAAACGTTCGCAGGACAGGC
AGGCACAACAGCGGAGCAAGAACGCTGCAGAGGGTGCTGCGGCAGAAACA
TGCCCGTAGCACCGAAGACAAGCTTTTGTCACACGCGTTGACAACACCCG
CTGTTTTGTACTCATTGCCTTTTCACGCTCTTAGTTGTTTTGCGCACCCG
TTGCCAACTCTTTTGACGTGTAAGATTGATCACGATTTGTTCTCTGCTGT
TTGTGTTGTTTTTTTCGCTTCTGCTATCACTGCTGCGGCGCCCCCCCCTT
GTACGTTTTTTTTTGGGGGGGGGGTCGTGGAATTCCAGGACCATCTGAAG
GCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGAGAG
CGAGCACTCGGCGTTCGATCACAAGGTTTGCGCAAATTCAGGAGCTGTCT
ATGAACGGGTGCCACGAAATTTCACACATTTCATTCGTTGATTTCCACGA
ACCACGGGTACGACTCTGGTTCGGGGGGGGAAGCGAGGGATTTCGTATGT
TGTGGTGGTTTTATTCCCTTTGGCGTCTTTCCAAATGTGTTTTGATGCTT
ACACGGTGGTGCCGTCGCAGCCTTTTCTGCTGCTGGTGGTGCCCTGCTCT
TTGAGATGATTTGGTCCCTCACGCGTCTCTCTCCCTCGTCCCTTCCCTTT
CTCCTGTCCCCTCTGCTTGTCTGTGCGGGGACTTTGCCTGCCATCCAAAC
CAACACTACCAACGTCGTCGACGACAACAACCAGATGCTTGTTTTGGAAG
TCATCTCCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTC
AACTACGACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCAC
AGCTTTAGTCAAGGTGTGTGTGTGTGAGGGGGGGGGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGGAGGGGGTAGGGGGGGGGGGAAGTCG
TGACCGACAAGCCGGAGGCGTCGCCCCCCTTCTTGGCGGGGGTTTGCATC
TTTCTCCTGACTCCTCAACTAGTCAATAACTCCTTCTCGCGGTCTCAGGC
GTCTTCTGTGCTACAGTCTGTCAGATTGGTGTACAACTGGGAAGCAATAG
TAGAGTGCTGATCCGTTTTGCATCGACGGCTCCCCAACCTCGCTCACAGA
AGCTTAAGCTTCCCTCAGCGTTTCCAGCACCGCTTGAAAGTGATTCCCAA
AGGCCTACATTACGACACACCATTTGTTCGCCGTGCGGACCTGATTGTGT
TTCTTCTTTGCAGCCACTTCCCTTCAGTATGGGTTGGCATGTTCCTACGT
AGCTTTCTCTCCGTCAATCTCTTCATTTTGGCCCCCCGTCCGTTTGTCAC
AGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCAAGAAG
GACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGCGCGGT
GGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTTGTACG
GGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA
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Coding sequence (CDS) from alignment at Scaffold_360:91780..95720+

>EsuBft419_13a-0001 ID=EsuBft419_13a-0001|Name=EsuBft419_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1446bp|location=Sequence derived from alignment at Scaffold_360:91780..95720+ (Ectocarpus subulatus male Bft15b)
ATGACCTTCTCCAGACTGGAGATGGAATCGCCGCCGCCTAGCATCCACGG
GGGGCAGGGGCAGCACGCATCACCTTCCCCGAAGAAGCGCCGCACCAGCG
CTATCGAGGCATTGCTCTCGCCAGCGCGACGCTCGGAGTTGTCCCCGGCT
GCTGCTGTGGAGGAGGAAGAAGCAGCGAAACCTTCGTCGGAAACACAATC
CGAAGACGACGACGACGGCGGGGTGGGCGGCGATGGTAGTGACGATCCCC
GGAATAGATTAGGGGGCGTTTTGCCCGGGGTGTTGGAGGTGCTTGCCGGA
GAGGACGAGGGGCAGGAGGAACCGGAGCAGTCCGAAGGAGGGGAGGGGGG
GGAGAGGGCGCGCCTAGACGAGGTGTCGCTAGCTGGAGGGGAGGGGGGAC
GAAGGAAGGGAAGAGAAGTGGGAGCCGGGAGGAGAGGGGGTGGGAGCCCG
AGGCTGCGGGTCGAAGGAGAAAACGTCGAGCTGACGGTGGTGCAGCGGGA
CGCTTTGATGCTGCTGAGCGAGCTGTGTGACTGGTCGTTGGTCGACGAGC
GGACGCTGAGTGAGGAGCTGGGCGGAAGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCCAGGGCGATGATGATGAGAGACCGGGCGATGAGGTGGGAGCCGA
GGCCCCTGGCGCACGAGACNTCGAGAGTGATACTGGAAAGCAAGGCTTAC
AAAATTTCTGCCCTCCACGGGTTTCACCTTACCACCACCGACCACGTGTT
TTTTTTTGGGTGGGGGGTTCCGCAAACACTACGGCCGCGAACGCCGAACG
CGCCAACCCAACCGCCATCTTTTCGCGGGCCTACGTCTGCAAACACAAGA
CGGCGGCGCTAGAGCTGATAGTGTCGGTCCTGCAGACTTATGGAGGCCCT
AGGTTCCGCGCTCTGCCCGCGGCGGCCACCCTCGTACGGGGCGAGCTGTG
CGCGGCGCTGCTCCACCACTGCACCTCCAACGTCACCGGGGTGGTGTCCC
TCAGCCTACGGGTGTTCGTTGCGCTGATCAAGGGGTTCAAGGACCATCTG
AAGGCGGAGATCGAGGTGTTCATCACGTCCATCTTTCTGCGCATCCTGGA
GAGCGAGCACTCGGCGTTCGATCACAAGATGCTTGTTTTGGAAGTCATCT
CCGGCCTTTGCCGGGACCCCCTCGCCCTGGTGGAAATGTTCGTCAACTAC
GACTGCGACCTCCAGGCCATCGACCTCTTCAAAAGGATCGCCACAGCTTT
AGTCAAGGTAGCCAAAGGCCGAGCAGGGTCCGAGGGTGCCAGTGCCAGCA
AGAAGGACCTGGAGCAGGACAGATCGCTGCAGCTCATGGGGATGGGGGGC
GCGGTGGCCATGGTGTCTTCTATGGTGAAGGCGGCCGATCTGGAGGAGTT
GTACGGGGATATGGCCATGGTTCCGAGGCGCGGGAGTGCGAGGTGA
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