Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft419_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 58 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=582bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAG
CCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGGCGGTCTGAGCCGTT
TCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTGGCGGTGGGTCCCA
TTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACGAGGCGCACCCATA
TAGGAGAGTCTGCACCACTTCAGCCTGGAGTAGCCGGATCTTGAGCTGGC
GGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTTCCGGCGGTAGCAC
TTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGTCGGCCTTCCCGTC
CGCGGAGATGGTACGTCCGAGGTACACAAACCGATCTGTCTGCTTGTACG
CCTGGCCGGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCCTTTCGGC
AGCATGCACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTCCGAACAG
GCCGGCCACGCGCACGATGACCGACATCATCTTCTCGAGACTCTCCGGTG
AGCGCGAGACGATGGCCGCGTCGTCAGCGTAG back to topprotein sequence of EsuBft419_5a-0001 >EsuBft419_5 ID=EsuBft419_5|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=74bp
MVRPRYTNRSVCLYAWPAALTVNGRSSIPFGSMHMISVFGSDAISPNRPA
TRTMTDIIFSRLSGERETMAASSA back to topmRNA from alignment at Scaffold_360:21246..22084+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=839bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)
CGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTTCCTCGCAG
CCTGCCTGGATGAGGGCCTGGGCATAGGACAGGGGGCGGTCTGAGCGTTT
CCGCTTGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAGCATGCGCTTGGGGAGGCGGTTGTCCTCCATGCGCATAAC
GAAGCCCGCGAAACACAGTCTCCGTTTGCGCACGGTGGCCTCGATGGTTT
CCTCGCAGCCTGCCTGGATGAGGGCCTGGGCATAGAACAGGGGGCATTCT
GAGCGTTTCCGCTTGCTCCAGCCGATGCACCGTGTGAGGAACTGGCGGTG
GGTCCCATTGAGCTTCGTGTAGTGCTCCGCTGTTAGGCTCCACGAGGCGC
ACCCATATAGGAGAGTCTGCACCACTTCAGCCTGGAGTAGCCGGATCTTG
AGCTGGCGGTCGGCCCGTCGCCTGTCGTACATCGAAGCACTGTTCCGGCG
GTAGCACTTCCACGCTCGGCAGCTGCGGCTCGTGATCTCCCGGTCGGCCT
TCCCGTCCGCGGAGATGGTACGTCCGAGGTACACAAACCGATCTGTCTGC
TTGTACGCCTGGCCGGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCC
TTTCGGCAGCATGCACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTC
CGAACAGGCCGGCCACGCGCACGATGACCGACATCATCTTCTCGAGACTC
TCCGGTGAGCGCGAGACGATGGCCGCGTCGTCAGCGTAG back to topCoding sequence (CDS) from alignment at Scaffold_360:21246..22084+ >EsuBft419_5a-0001 ID=EsuBft419_5a-0001|Name=EsuBft419_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=225bp|location=Sequence derived from alignment at Scaffold_360:21246..22084+ (Ectocarpus subulatus male Bft15b)
ATGGTACGTCCGAGGTACACAAACCGATCTGTCTGCTTGTACGCCTGGCC
GGCGGCGCTGACCGTGAACGGGCGTTCCTCCATCCCTTTCGGCAGCATGC
ACATGATCTCAGTCTTTGGCTCCGATGCCATCAGTCCGAACAGGCCGGCC
ACGCGCACGATGACCGACATCATCTTCTCGAGACTCTCCGGTGAGCGCGA
GACGATGGCCGCGTCGTCAGCGTAG back to top
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