EsuBft985_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft985_10a-0001
Unique Name	EsuBft985_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:440865..444369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft985_10
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	45
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft985_10a	EsuBft985_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 440865..444369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_10a-0001-exon	EsuBft985_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 440865..441034 +
EsuBft985_10a-0001-exon	agat-exon-17688	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 443756..443876 +
EsuBft985_10a-0001-exon	agat-exon-17687	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 444211..444369 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_10a-0001-exon	agat-five_prime_utr-15499	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 440865..440873 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_10a-0001-cds	EsuBft985_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 440874..441034 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_10a-0001	EsuBft985_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 440874..444369 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:440865..444369+
coding sequence from alignment at Scaffold_358:440865..444369+

spliced messenger RNA

>EsuBft985_10a-0001 ID=EsuBft985_10a-0001|Name=EsuBft985_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=450bp|location=Sequence derived from alignment at Scaffold_358:440865..444369+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGCTCGGGATGCGAGCCCTGCTGCAGGAGAAGCTTCAGAAGACGCGTCT
TCTCCTGGAACAGAGGAAGAAAGACGACGAGGTGTTCGCCACCCACGGCG
TCAACGAGCCCGACTTCGGGGATCGCAAGAAGGAACACCAAGCACTCACC
TTGAAGACAGATGCGATTCGATCGGCCCACGCCAGCACAGAGGCCCGCAA
AGCGGCGCATGAAGAGGAGAAACGCCGTGTGGCGAAAGAAACGGCAGCGG
AGAGAGTCTCGATTGGGGCGGAAATTTTGGCGGAGGACAATGAACACGCT
CGCGTCGTCGCTGAGTGCAATGAGACCTCTGCCGCCGTCGCCAACAAGGA
GCTCTCGGTCGCTGGCAAGAGGGCGGAGCACGCGTCTGCCGAAGGTGCGG
GAGAGCGAGGTTGCGAGACAAGCCAGGCCGCCTGCCAGAGGAATGTGTAG

protein sequence of EsuBft985_10a-0001

>EsuBft985_10 ID=EsuBft985_10|Name=EsuBft985_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=146bp
MRALLQEKLQKTRLLLEQRKKDDEVFATHGVNEPDFGDRKKEHQALTLKT
DAIRSAHASTEARKAAHEEEKRRVAKETAAERVSIGAEILAEDNEHARVV
AECNETSAAVANKELSVAGKRAEHASAEGAGERGCETSQAACQRNV

mRNA from alignment at Scaffold_358:440865..444369+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft985_10a-0001 ID=EsuBft985_10a-0001|Name=EsuBft985_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3505bp|location=Sequence derived from alignment at Scaffold_358:440865..444369+ (Ectocarpus subulatus male Bft15b)
GTGCTCGGGATGCGAGCCCTGCTGCAGGAGAAGCTTCAGAAGACGCGTCT
TCTCCTGGAACAGAGGAAGAAAGACGACGAGGTGTTCGCCACCCACGGCG
TCAACGAGCCCGACTTCGGGGATCGCAAGAAGGAACACCAAGCACTCACC
TTGAAGACAGATGCGATTCGGTAAGTCGGGACTCAATGGATGTTTACGTA
CCGCTACCTAACGCGGCGATAGGGCTTCCTCCCATATGACTAAATACCCG
CCGAAAGGAAGCGGGAAGAAGTTTTTTATTGCTTTGGTGGGGGTGTGCTT
TTGGTGTTCAATGGTTGGTCTTCAAACGTCCGCGTTTCCTGCTGTCGCTG
TTGTTGCTGCTGTTGTCATTTATGGTTTTATCCACCAGGGCTCCAGATCA
TGTTGAACCCACAGGCGCACCTCACTTTGCATGGCGCTCCTAGTGCCTCG
CGCTTCCGCTGATGCATCCATACGTGAAACGTGCTGGAGTGTTTCTGCTT
GTCGATTTTGAGGCTTCCAGACGATTCCCTTTTTGAGGCTTCGAGTTGCT
TCCCCCTCCCCTCCGTATTGTTTACCTTCCCCTTCTCCGCCCTCCGCCCC
CCCCGGTGTTTGCTATCGGGGTTGGGTTTTCGTCGCTTGGCAAAGACGTT
GTAAAACAAGCCAATTCACTTCGTGAACTCGGCAACCAGGTTACCGTTTT
TTTTTTTCCTCCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATGGTGGTCGAGTAGATCATGTTGTGCGGGGTGGATAACCCTCACTCCGC
GCAAGGGGAATGACCGCACCACGTTGTGTTAACATGGTCAAGCACCCTCG
AGGCAGTTACACAGTGCTTACAACTGTCTCTGGAAGTGAAAGCACCAGAA
ATGAAATTAAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCC
TTCTTCTCTCGTTTGCTGTTTGAAACTGGCCCCCTGGACAGATCGGCCCA
CGCCAGCACAGAGGCCCGCAAAGCGGCGCATGAAGAGGAGAAACGCCGTG
TGGCGAAAGAAACGGCAGCGGAGAGAGTCTCGATTGGGGCGGAAATTTTG
GCGGAGGACAATGTGGGTATCTCTGCCGTTTGATCCAAGAACCGGAAGCC
GTCCTACGTATTTGTTGCCGTTGCACAGAAGGAGCTGTGATGTTGGCGAC
TAGATAGTGTGTTGCCTTTCGCGAACGTTGCAGGGCGGACTCCTTGTTCT
AGTTCTTGGTTTTGACATCGAAAGAGTTTTTTTCTCGCTACGTGAAGGGA
AACAATAGTCGACGAACACACGCCACGGAAGTTGTTAATCCCCAGGCGTT
GAACCAGAAGTTACTTTTTTTTCATCTCTCGACCGGCCGATCTGATCAAC
GAAGCACGTGATAATACGACCGATGAACTACATGTCACTACTCCAGGAAC
ACGCTCGCGTCGTCGCTGAGTGCAATGAGACCTCTGCCGCCGTCGCCAAC
AAGGAGCTCTCGGTCGCTGGCAAGAGGGCGGAGCACGCGTCTGCCGAAGG
TGCGGGAGAGCGAGGTTGCGAGACAAGCCAGGCCGCCTGCCAGAGGAATG
TGTAG

Coding sequence (CDS) from alignment at Scaffold_358:440865..444369+

>EsuBft985_10a-0001 ID=EsuBft985_10a-0001|Name=EsuBft985_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_358:440865..444369+ (Ectocarpus subulatus male Bft15b)
ATGCGAGCCCTGCTGCAGGAGAAGCTTCAGAAGACGCGTCTTCTCCTGGA
ACAGAGGAAGAAAGACGACGAGGTGTTCGCCACCCACGGCGTCAACGAGC
CCGACTTCGGGGATCGCAAGAAGGAACACCAAGCACTCACCTTGAAGACA
GATGCGATTCGATCGGCCCACGCCAGCACAGAGGCCCGCAAAGCGGCGCA
TGAAGAGGAGAAACGCCGTGTGGCGAAAGAAACGGCAGCGGAGAGAGTCT
CGATTGGGGCGGAAATTTTGGCGGAGGACAATGAACACGCTCGCGTCGTC
GCTGAGTGCAATGAGACCTCTGCCGCCGTCGCCAACAAGGAGCTCTCGGT
CGCTGGCAAGAGGGCGGAGCACGCGTCTGCCGAAGGTGCGGGAGAGCGAG
GTTGCGAGACAAGCCAGGCCGCCTGCCAGAGGAATGTGTAG