EsuBft985_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft985_9a	EsuBft985_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 433496..438333 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_9a-0001	EsuBft985_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 435957..438333 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_9a-0001-exon	agat-exon-17685	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 433496..433521 +
EsuBft985_9a-0001-exon	agat-exon-17686	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 435781..436169 +
EsuBft985_9a-0001-exon	agat-exon-17684	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 436511..436561 +
EsuBft985_9a-0001-exon	EsuBft985_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 438085..438333 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_9a-0001-exon	agat-five_prime_utr-15505	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 433496..433521 +
EsuBft985_9a-0001-exon	agat-five_prime_utr-15506	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 435781..435956 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft985_9a-0001-cds	EsuBft985_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 435957..436169 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:433496..438333+
coding sequence from alignment at Scaffold_358:433496..438333+

spliced messenger RNA

>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=715bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCAACACAAGGAACAGGAACAACAGCGGCGCCTGATTTTTCACTCGCAG
GGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCACACAACGAC
GGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCATCTGACTGAG
TGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACACCGCAAGACA
CCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTC
TCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATAT
CAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCG
CGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAG
AAAAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGA
ACCTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAG
CTAGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGAC
GGCATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTA
CCGCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACC
CTACCCCAGTGGTGA

protein sequence of EsuBft985_9a-0001

>EsuBft985_9 ID=EsuBft985_9|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=170bp
MGSSEVSQLCEMNAELSSCKENNDRTRQEISDIRVMIGLQEKRLESQVSA
TNRHRSGKAAATAAVEKRMQRLFDLRLKVDHIAKQHNEREEQTTNLPATN
LAKENEAAELTRRSEELDVEIRVQREEQATAETACTSSTTVSGSPLTFTT
APRGRISRTPTPMVMTLPQW

mRNA from alignment at Scaffold_358:433496..438333+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4838bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
AGCAACACAAGGAACAGGAACAACAGGTAAGCGGCATGAAAGCGGTACCT
CTCCACATAAGTCGCATTCTTGACGGGTGGGTGCGGGTGCGAAAGACAGA
CAGCGGCTGCTTGGCGGTTGTCAAGATTGTCCAGGCACTATACCTCCTAC
CGCTCCTTAGTTAGTTGTACTTGCTGTTGCCGCTTTCGGAGATACGTAGA
GGCATACTCGTAGCCCTTTTCAAATGAAGTGCACGTGTGTGTGGACCGAC
CCTTGCTGTTCACCACACCTCTAGTGCAAGAGCTAGGAGGTGGATCTCTA
AACTAGTGTGAGGGTGTCACTCTTCTCTCGCTTCTTTGTTCACCAAGAGA
GACAGTCAGCCATTACAACCTCTGACGACCTTTGGGACGGGAAAAGGTAC
ACAATTGGTTCTCCTGCCGTTTCGTGTTTCATTCACACTCGCGCGGGCGG
CACTGACGGAGAGAAGGCACAGCAGTTGACAGTTTCCTGAGTACGCGAAG
CAAGGCACAGCCCAGCACGCCCGTCTCTCTATTGGTATTGAGCGTAGCCT
TTGACATCTGCGCTCGTTCGCTCATATATTCTAGACTACAGCATTGTATT
TAGTGAGTGTATCCCACCGCGTCACCCGTTCGCGTTGCAAACTTGCTTGC
GACCTGAAGAAATGGTCAAAGTGAAAACAATATCGAGACACATAAAGATA
GCGCCCGCACTTAAGAACTTAGCAGTTAAGAAATCGAGATTCGCAAAAAA
TCAGAAGCTAAGAACTTGAGCACCATTTGTGAGCTCGGTTTAAGAACCCT
ACTCTAAAACCTATATAGCGGTCATTTGTAGCCCACAAGAGGATGATCAG
CAAAATATGAACCCGAGCCACGGCCCAAACTCGAGGTTGTTAAGTGCGGG
CGCCATCTGTAGGCCCACCAATCGAAAATCGGGGTCCGTGGGGGAGGGGG
GGGCGGGGGGGGGGGATTCCGGGGGGGTCTAATTGCTAGGCCGTTTTTCA
TCAGCACTACAGACCAGGCACAGTGACTTGGATGCTCGCGAACATGACGT
ACTCATTCCGCTTCAAAAATCCAGGAAACGCCTGCATATCTCAGTTTTCC
AAGTTCTAACTCCAGTGCGAAACTTCAATCGCAAACTAACCGTCCGCTGA
CTCCCTCTCGTGTACAATGTGAAATAATAGTATCTGAGACTGGAGCCCTT
GCGATCACAGCAGACTAGCGGTTCGCGATTTTCCATACGATCCTTCTATC
ATCGAGATCGGTGAGCTACACGCTGGATTGTTGTAGCTGTTGTGCGGTCC
GATTTCGGGACGCTTCAAGCACCTTTGCTTCTAGCTAGACCTACATATAC
ATCACCGCAGGCATGCAAACCGGCTGTGGCGACGAGAAGAACACATGTGA
GGGAAGAGCTGCGCTGAAGTTCGCAGCCCCACAGGCTCACACAGGTGCTG
ATCCGCCGTTGCTGTTTGCTTGAAGCGTTTCAAAATCGGACCGCACAGCA
GCTGCAAAAATCCTGCTTGTAGGTCACAGATAGATCTCGATGATAGAAGG
ATCGTTTGGAAAAACCCGGATCGCTAGTCAGTAGTGCATCGCAAGGGTTA
CAATCTCAGATACACGAAAGGGGGTCAGCGGACGGTTTATTTGCGATTGA
AGTTTCGTACTGAAGTTAGACTCTAGAAAACTGTGATATGCAGGCGTTTC
CTGTATTTTTGAAGATGAAAACTGCGGTCCCCACCGCACCCTTAACAACC
CATATCAAAGCGAAATCATTCAAGGATCTGCTCCAGACATCTCTCCTACT
GCTATATTGCTTCCCTGAGATACTGCATAGGAACATTGATGTTCACGGGT
GGCGAACAAGGCAGCGGGGAGAAGCGTTGTTGAAGGTATTCATTTTGTTT
GGATCGAAACGTTCCCTGAGTGTTCGTCTTGTTGTTCCGAAGAACTCGAA
GTCACCATGGCAACAACATTGCTATTTACTTCCTCGCTGAAGGACTGTTG
TACCTTCTACCTTTTGCCTCGTCCCACCCGCTCTGAGTACTACAGTGCAC
GACCTCAGCTCTTCCCAGCAAGTTGGCCGTAACGCGTAGTAGCCGTTCAC
TCTCTTTGGGGGGTGATTGTTACCTGTACACGCCGCAGCCCCTGGCTGCG
GATAATTGCCCGTGCTTTTTAATGTACGCCTAGTCACCGTAAGAAGACAA
GGCTTACAGCACGAAGCCGTGGCCGTTGGTGATACATCACATTTCGCCCC
ACTCAGTTCACTCGCGTCGCGTGTACGTTCCCTAGCGGCGCCTGATTTTT
CACTCGCAGGGATCAGCCAAGAATATACGTTACGGATTTCTTCGGTGGCA
CACAACGACGGCGCAACACGACCATCGATTGCCCCAGGCAGCTGTTTCAT
CTGACTGAGTGACTAGGAGAAGCCAAACGACACTTTCACAACACAAACAC
CGCAAGACACCATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAAC
GCGGAGCTCTCTTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGAT
CAGCGATATCAGGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCC
AGGTGTCCGCGACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCC
GCTGTGGAGAAAAGGATGCAGAGGGTGAGACGAACCGTACGCGGAAATCA
TTTTTACTGTTGGTCGTTCATTTTTCGTCATTCTATCGTGCGCGGTTGTT
TTTTTTGTGCGCCTTGATGTGTTTCGCCGAGAGACTTATTTGTAACGGCT
GGCCGTGTCGGGATGCAAGAATGCGGCCCACTTGTCCCCTCACCTGCCAC
TGGCGCTCGTGTCCTCGTTGTCGTCGCTCGTGATGTTGTTGTTGGAAGAA
TGAAGTCCACTTGTCCCCTCGCCTGCCTTCAGTCGCCGTTGACGGTCCTA
TGCTTGAGATTGTCCCCCCCTGCCCCCTCACCTGCCCGAAATCGTGTCCT
TCTTGCGATCGACAGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGC
CAAACAACACAACGAGGTCCACCAGCAGCGCATGAAACGAGCGGCTGCAG
GTTCAAACAAATATGCTTTCTGGTTGCCATGAGAAGTGGCCCTTCATGGA
CACCCTCTACTCTGATGAAGTCGAAGGGCCCACTTTCAAAATACGGTTCT
GCGTCTCGCGCTTTGACAACCTTCGTGCAACCCGCTTGCCGAGTCACGTT
GAATCGCGCTTCATGGCCGTCTGCCTAGCAGTATTTTGCATCCCGGTTTG
GTAGGAGTAGCAAGATCTAAAGTCCAAAGCCTGCGGCTAAACTCAATGTT
GCATGCCTCAGCTGGCCCTCTTCGTCACGCCGAGAGTAACATGTTCGCTC
CTCCCCCGCAAGGTATTAATGATGTGAACACCGTAGAAAGTAGACGACGC
TAAAAAACTGGCATGCGACGCGTGAGCAGTGATTCTAGCGTGCAAATTTG
TATCACCACCGTGTCCCAGCACCAGTCAACCAGGAACAGAATGATAGAAC
CTTATCGATTCATCACATTAATTTGCGGTGACACCCCACCCCCCCCTCCC
GCTCAAAGGCGTACAACAGCACCAAGAAGGAAGAGCTACAGAAGTGCCCC
AAGAGCTCCGGGTAGAGCTGGAGCGGCTGGAGAGCTCCGTCACGAAGGAA
ATCGAAACGAAAAAGGCACGCCAACACTCGTCGTTGCGGTTGTCGACAGG
AGACCATGGCAGCTGACTTTGGCATCTGTCTCTGCACCCTTGGTTATGAA
ATCATCGGCAAAAATTGTTTGATGGTTGGCAACTTCTTTTATTTTGCTTG
AGAATTTTCGAACATAGTCATAAATTTCACAAGGGTAGCACTTTATCCCG
TGTGCTCGTGCGGGTACTCTGCGGGGTACAGCCGGTCCGTTTGGCGGAGT
TCTATGGGGTATTCGCCTGACTTGGGTGCTGTTGTGCTACTTATACAGGT
TAGAGTCAATCGCCGATTCCATTCCCGTCCTCGCAATCGACCAACACGCA
TTGTCTTACTAACTATATGCGTGCCATCCCGGAGGGGTAGCACACTGTCT
CGTTGTTTGTTTCCCCACCTGACAGTCGCGTCTCAAAGGTTCAAAACCTT
TCGCTGCAGGGACTTAATCACAAACACTCGAAAATCGAACTGTTCCCCTT
CGCGACGCTCCGCTGTATTCCCCCCACCGCATTGTAAAATAGTCAGTCGA
AATGATCCTGCCACGTTGTTGTTGTTATTGTTCGCTTCCGAGTTGAACCC
GGAAGCGGCCGTGGTCATCTAACGATCACATGCTGGTCGAACAGACCTCT
TAGCTTCTCTTACGCGCCCACAATCAACCATTGCACGGGCTAATGACGCG
AGCAGGTGTACGAGGAAAGCTATGCGTTAATTAAAGTGACCGTTCGAGTA
GGTTCGAGCTTTTGGAAGCGTATGCTTTACTTCGTTCACGCATCGCGTGA
CTGCGGTATGTGGTGGCTGATCCCACGGTAACCTTATTTGTGGTGTGCGT
GTGTGTTTTCTGCCAACTTGTTGTTGTCGGTCCCGGCAGCGAGAAGAGCA
GACGACGAACCTCCCCGCAACGAACCTGGCAAAGGAAAACGAAGCGGCAG
AGCTGACCCGTAGATCCGAGGAGCTAGACGTGGAGATCAGGGTGCAGCGG
GAGGAACAAGCCACCGCTGAGACGGCATGCACCTCTTCCACTACAGTGAG
CGGGTCCCCTTTGACTTTCACTACCGCCCCGCGGGGCCGCATTTCCCGCA
CCCCTACCCCAATGGTGATGACCCTACCCCAGTGGTGA

Coding sequence (CDS) from alignment at Scaffold_358:433496..438333+

>EsuBft985_9a-0001 ID=EsuBft985_9a-0001|Name=EsuBft985_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=513bp|location=Sequence derived from alignment at Scaffold_358:433496..438333+ (Ectocarpus subulatus male Bft15b)
ATGGGGTCGTCCGAAGTCTCGCAGCTGTGTGAGATGAACGCGGAGCTCTC
TTCGTGCAAGGAGAACAACGACCGGACGCGGCAGGAGATCAGCGATATCA
GGGTGATGATTGGTCTCCAGGAGAAACGCCTTGAGAGCCAGGTGTCCGCG
ACCAACCGGCACCGCTCCGGGAAGGCGGCGGCCACGGCCGCTGTGGAGAA
AAGGATGCAGAGGCTTTTCGACCTGCGCCTGAAAGTGGACCACATTGCCA
AACAACACAACGAGCGAGAAGAGCAGACGACGAACCTCCCCGCAACGAAC
CTGGCAAAGGAAAACGAAGCGGCAGAGCTGACCCGTAGATCCGAGGAGCT
AGACGTGGAGATCAGGGTGCAGCGGGAGGAACAAGCCACCGCTGAGACGG
CATGCACCTCTTCCACTACAGTGAGCGGGTCCCCTTTGACTTTCACTACC
GCCCCGCGGGGCCGCATTTCCCGCACCCCTACCCCAATGGTGATGACCCT
ACCCCAGTGGTGA