EsuBft207_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_5a-0001
Unique NameEsuBft207_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:301161..302429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft207_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length78
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_5aEsuBft207_5aEctocarpus subulatus male Bft15bgeneScaffold_358 301161..302429 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_5a-0001-exonEsuBft207_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 301161..301676 -
EsuBft207_5a-0001-exonagat-exon-57838Ectocarpus subulatus male Bft15bexonScaffold_358 302097..302238 -
EsuBft207_5a-0001-exonagat-exon-57837Ectocarpus subulatus male Bft15bexonScaffold_358 302299..302429 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_5a-0001-exonagat-three_prime_utr-8091Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 301161..301262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_5a-0001-cdsEsuBft207_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 301263..301676 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_5a-0001EsuBft207_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 301263..302429 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_5a-0001 ID=EsuBft207_5a-0001|Name=EsuBft207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=789bp|location=Sequence derived from alignment at Scaffold_358:301161..302429- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGAAGAGCGGCCTCTCAGCTATCGGCCGATAGCGAAGCCGAAGGG
CAGGAGACAGCCAACTGGTGGTGCAGTTGGACGCCCGTCCAAGTCGGACA
AGAGAGCCAAGAACTGCACAGCGGGAAAAGCGGCCTGGACTACGGACACA
TCTGTGCACGAGGTGAAGTCGGAGAAGGGCGAGGTCCGGACCCACTTGCA
GTCAAGGATTGTCCTCATGCTACTCTTCGACCTCCGCAAGGAAGGTTGCT
CTGAGAACGAGGTGGTGTTGCAGGTTGCGCGCACTTTCAAGATCGGCCAC
GACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTTGTA
CGAGACCACCGCCGCGGGGAGAGGCAAGACGGCAAAGAAGGATGATGGCC
GACGCCGCCTCACCAAAGCACAAGAAGATCAACTTCGCGAGTTCATCAAC
GACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGGCAGAATG
GATGCACAGGACTTGCAACATGGAGCAGCCGTCCAACCGTTCGGCAGGAG
GGCTGCTGAGTAGGCTCGGCTTCAAGCGTCGTAGAGGCAGGATCAAAACG
CCGCCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTCTTGTTGA
AATGGACATGGCAAAGAGGGCAGAGGATGCTGGGTGACAAGTGATCGTGT
ATATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCTCCCTATTCTTAC
TTTCCTTCGGACGAGAATGGAGTTGTGCAGGATGGGATT
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protein sequence of EsuBft207_5a-0001

>EsuBft207_5 ID=EsuBft207_5|Name=EsuBft207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=228bp
MLEERPLSYRPIAKPKGRRQPTGGAVGRPSKSDKRAKNCTAGKAAWTTDT
SVHEVKSEKGEVRTHLQSRIVLMLLFDLRKEGCSENEVVLQVARTFKIGH
DKVRRINNHWWDHRQLYETTAAGRGKTAKKDDGRRRLTKAQEDQLREFIN
DEHKAGRQVFRRTVAEWMHRTCNMEQPSNRSAGGLLSRLGFKRRRGRIKT
PPLNAERLARIRRFLVEMDMAKRAEDAG
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mRNA from alignment at Scaffold_358:301161..302429-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_5a-0001 ID=EsuBft207_5a-0001|Name=EsuBft207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1269bp|location=Sequence derived from alignment at Scaffold_358:301161..302429- (Ectocarpus subulatus male Bft15b)
ATGCTCGAAGAGCGGCCTCTCAGCTATCGGCCGATAGCGAAGCCGAAGGG
CAGGAGACAGCCAACTGGTGGTGCAGTTGGACGCCCGTCCAAGTCGGACA
AGAGAGCCAAGAACTGCACAGCGGGAAAAGCGTGAGCAGCAGGCGGCTGA
GCGCGTCAGCAGCTGCTGCCGCGGCGGAGAAGGTTGCTCAGGGCCTGGAC
TACGGACACATCTGTGCACGAGGTGAAGTCGGAGAAGGGCGAGGTCCGGA
CCCACTTGCAGTCAAGGATTGTCCTCATGCTACTCTTCGACCTCCGCAAG
GAAGGTTGCTCTGAGAACGAGGTGGTGTTGCAGGTCAGTACACAGCAGTG
AAGGTCGGATGGTGCGGCACAGCAGCAGGCCGATGTCGTTTTTATATATT
CATCTTGATCAAAGAGAGGTAACGGTTGGTGTTTGAATGTTTTCTCCGGA
ATATGCGCTTACACCCTATCTTTGCAGCGGTGTACAACAGCAGTATGTTT
CTGTGTGGTAAGTTTGTTTTCGTCGCATGTATGTTGGGCGCGAGCCTGTG
CTGTTCGTTACATGTTTGACTCACCAGTCTACGTCACACAAATAAACAGC
AGGAAAACATTGTACTGCTGTACAGCAGTACTTTACAGCAGACGAGCAGG
CTTGCATGTGCGATGCCTCACTGTACAATGTCCAAGTGAACTGACCTTAT
TCATAAACGATGTTGCAATATTTTCTCTTCTCTGGACCTCTCTATGCTGG
CAGGTTGCGCGCACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAA
CAACCACTGGTGGGATCACCGCCAGTTGTACGAGACCACCGCCGCGGGGA
GAGGCAAGACGGCAAAGAAGGATGATGGCCGACGCCGCCTCACCAAAGCA
CAAGAAGATCAACTTCGCGAGTTCATCAACGACGAGCACAAGGCCGGTCG
TCAAGTCTTTCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACA
TGGAGCAGCCGTCCAACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGC
TTCAAGCGTCGTAGAGGCAGGATCAAAACGCCGCCGTTAAACGCCGAAAG
ACTTGCTCGCATTCGTCGGTTTCTTGTTGAAATGGACATGGCAAAGAGGG
CAGAGGATGCTGGGTGACAAGTGATCGTGTATATGGATGAGAGTTTTGTC
CACCAGGCTCATGGTTCTCCCTATTCTTACTTTCCTTCGGACGAGAATGG
AGTTGTGCAGGATGGGATT
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Coding sequence (CDS) from alignment at Scaffold_358:301161..302429-

>EsuBft207_5a-0001 ID=EsuBft207_5a-0001|Name=EsuBft207_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=687bp|location=Sequence derived from alignment at Scaffold_358:301161..302429- (Ectocarpus subulatus male Bft15b)
ATGCTCGAAGAGCGGCCTCTCAGCTATCGGCCGATAGCGAAGCCGAAGGG
CAGGAGACAGCCAACTGGTGGTGCAGTTGGACGCCCGTCCAAGTCGGACA
AGAGAGCCAAGAACTGCACAGCGGGAAAAGCGGCCTGGACTACGGACACA
TCTGTGCACGAGGTGAAGTCGGAGAAGGGCGAGGTCCGGACCCACTTGCA
GTCAAGGATTGTCCTCATGCTACTCTTCGACCTCCGCAAGGAAGGTTGCT
CTGAGAACGAGGTGGTGTTGCAGGTTGCGCGCACTTTCAAGATCGGCCAC
GACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTTGTA
CGAGACCACCGCCGCGGGGAGAGGCAAGACGGCAAAGAAGGATGATGGCC
GACGCCGCCTCACCAAAGCACAAGAAGATCAACTTCGCGAGTTCATCAAC
GACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGGCAGAATG
GATGCACAGGACTTGCAACATGGAGCAGCCGTCCAACCGTTCGGCAGGAG
GGCTGCTGAGTAGGCTCGGCTTCAAGCGTCGTAGAGGCAGGATCAAAACG
CCGCCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTCTTGTTGA
AATGGACATGGCAAAGAGGGCAGAGGATGCTGGGTGA
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