EsuBft207_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft207_6a-0001
Unique Name	EsuBft207_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:299982..301159 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004988920.1
ProteomeId	EsuBft207_6
Protein domains	PF13358
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	946362.XP_004988920.1\|-
Length	117
Hectar predicted targeting category	other localisation
Evalue	4.51e-07
EggNOG OGs	2D5ST@1\|root,2SZIE@2759\|Eukaryota,38F03@33154\|Opisthokonta
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a	EsuBft207_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 299982..301159 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a-0001-exon	EsuBft207_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 299982..301159 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a-0001-exon	agat-three_prime_utr-8092	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 299982..300134 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a-0001-cds	EsuBft207_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 300135..301133 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a-0001-exon	agat-five_prime_utr-5259	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 301134..301159 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft207_6a-0001	EsuBft207_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 300135..301133 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:299982..301159-
coding sequence from alignment at Scaffold_358:299982..301159-

spliced messenger RNA

>EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACG
AAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGG
CTGGTTCAGGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGA
CAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCA
GCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCC
TGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTC
TTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCG
GAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGC
CAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGT
ACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAAC
AGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTA
CATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCA
TGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCC
TTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCT
TAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTA
AAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAG
GCAGCCGATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAA
GTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAACCTCA
ATAAGCCGGACAGGTACGTTACAGATGATGTGTCGCCCGTGGGTGACGTC
GAGGAAGGGGTAAGGGAGCAGATCCAGCAGAAAAGCGCAGAGTGGGGTGA
TGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTGCGGTCTTGTGATC
GATTGCTACGCCCATGCACTGGGTGTGCCATGTTCCAACAGCACACTATG
TGATTGCTGTGCGCGGGGGCTTGCGTCCCTGCTTCCAGCTGCTGCAGTTG
TCCTTGAAAAAAAAATCAAAAATATTCA

protein sequence of EsuBft207_6a-0001

>EsuBft207_6 ID=EsuBft207_6|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=332bp
MIMVHAITKWGPLAKLCDGLPIEEGWFRETGSGKKEMEDEETAEFLWQAK
LAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHG
FDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEP
GSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALI
WTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEW
PGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLSGTIGNLNKPDRYVTD
DVSPVGDVEEGVREQIQQKSAEWGDGSDEVEP

mRNA from alignment at Scaffold_358:299982..301159-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)
GTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACG
AAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGG
CTGGTTCAGGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGA
CAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCA
GCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCC
TGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTC
TTGACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCG
GAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGC
CAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGT
ACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAAC
AGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTA
CATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCA
TGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCC
TTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCT
TAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTA
AAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAG
GCAGCCGATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAA
GTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAACCTCA
ATAAGCCGGACAGGTACGTTACAGATGATGTGTCGCCCGTGGGTGACGTC
GAGGAAGGGGTAAGGGAGCAGATCCAGCAGAAAAGCGCAGAGTGGGGTGA
TGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTGCGGTCTTGTGATC
GATTGCTACGCCCATGCACTGGGTGTGCCATGTTCCAACAGCACACTATG
TGATTGCTGTGCGCGGGGGCTTGCGTCCCTGCTTCCAGCTGCTGCAGTTG
TCCTTGAAAAAAAAATCAAAAATATTCA

Coding sequence (CDS) from alignment at Scaffold_358:299982..301159-

>EsuBft207_6a-0001 ID=EsuBft207_6a-0001|Name=EsuBft207_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=999bp|location=Sequence derived from alignment at Scaffold_358:299982..301159- (Ectocarpus subulatus male Bft15b)
ATGATCATGGTGCATGCAATCACGAAGTGGGGGCCGTTGGCTAAGCTTTG
TGATGGGTTACCGATCGAAGAGGGCTGGTTCAGGGAAACGGGTAGCGGCA
AGAAGGAAATGGAAGATGAGGAGACAGCAGAGTTTCTGTGGCAGGCTAAG
TTGGCAAAGGGCGATTACCACGCAGCAATGACCGACTCGATGTTCATGGA
GTGGCTTGAACACCGCCTTAGCCCTGCGTACAACGCGATCCCGGAGTTCA
AAGGCAAACGGATGATTCTTGTTCTTGACAACGCCTCATACCACCATGGA
TTTGACGCGGAAGTCAAAGTGCCGGAAACCAACACCAAGAAGCACAACGT
CGATCTGTTGCGTATGTTTGGGGCCAAGTCGATCAGGGTTAGGCGTAAGG
AGGGCGAACAGGGCGTTGTTGAGTACAACTTCGAGGTACCGACAGAGCCT
GGTTCTTCATTCCCTGCAGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGA
GGTAGCAACGGCCACTCGGGAGTACATCCACCTCAATCACCCTGAAAGGC
TCGAGGAACGGGTGGTGACGTTCATGAGGAAAAAGGGGTGGGCGTTGATT
TGGACGCCGCCCTACATGCCGTCCTTTCAACCGATCGAGCTTTTTTGGCA
GCATGGTAAGCAGTACGTCAGCCTTAACTTTGAGTTGAAGCGAAAGATGC
GGGAGGTGTGGGTGCAGATTCGTAAAGGTTGGTACGGGGACAAGGAATGG
CCAGGCCAGGAGGGGGGGTGGAAGGCAGCCGATTGTTCGAAGCTGGTTGA
CCACGCCATTGGAGAGATGAATAAGTGGGTCAAGGACCGTGATGGAGTGC
TTTCTGGTACGATAGGCAACCTCAATAAGCCGGACAGGTACGTTACAGAT
GATGTGTCGCCCGTGGGTGACGTCGAGGAAGGGGTAAGGGAGCAGATCCA
GCAGAAAAGCGCAGAGTGGGGTGATGGCAGCGACGAGGTTGAACCATGA