EsuBft207_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_14a-0001
Unique NameEsuBft207_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:227324..232480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FUY4
ProteomeIdEsuBft207_14
Protein domainsIPR010554
Protein domainsIPR006602
Protein domainsPTHR12086
Ownerapollo_admin@sb-roscoff.fr
Noteef-hand domain-containing family member c2 os:danio rerio gn:efhc2 pe:2 sv:2 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1623
Hectar predicted targeting categoryother localisation
Evalue0.0
EggNOG OGsKOG0043@1|root,KOG0043@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRIB72
Descriptionalpha-tubulin binding
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0044464
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_14aEsuBft207_14aEctocarpus subulatus male Bft15bgeneScaffold_358 227324..232480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_14a-0001EsuBft207_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 227324..232480 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_14a-0001-exonagat-exon-57876Ectocarpus subulatus male Bft15bexonScaffold_358 227324..227599 +
EsuBft207_14a-0001-exonagat-exon-57875Ectocarpus subulatus male Bft15bexonScaffold_358 227827..228066 +
EsuBft207_14a-0001-exonagat-exon-57874Ectocarpus subulatus male Bft15bexonScaffold_358 228446..228598 +
EsuBft207_14a-0001-exonagat-exon-57873Ectocarpus subulatus male Bft15bexonScaffold_358 229221..229391 +
EsuBft207_14a-0001-exonEsuBft207_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 229804..230195 +
EsuBft207_14a-0001-exonagat-exon-57878Ectocarpus subulatus male Bft15bexonScaffold_358 230525..230657 +
EsuBft207_14a-0001-exonagat-exon-57877Ectocarpus subulatus male Bft15bexonScaffold_358 232223..232480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_14a-0001-cdsEsuBft207_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 227324..227599 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_14a-0001 ID=EsuBft207_14a-0001|Name=EsuBft207_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1623bp|location=Sequence derived from alignment at Scaffold_358:227324..232480+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCACGACGGGGAGATCACAGCCCCTCCTGGGCGCCGGAGCAGG
GGCGCCCACGGCCGGCTTCGTGACAAACTCCGGCCTCGTGCTGCAGTTCG
ATGCGTATTTCAAGGAGGCGGTAGACGAGTCGCCGCTGGAGAACCACCGT
GTTCGAAAATGCAAGATCTTGGTCTACCTGGAGGACTCGTCGGTGCAGAT
CGACGAGTACCGGCAGGAAAACAGCGGGATGCCCCAAGGGACGTTGGTCA
AGCGACATCAAATACCCTACCCTGAGGGAAGACCTGGGACTTACACCGTA
GACGACATCGCCGTAGGAGGCACGATCGAGGTCTACGGCCGGCGGTTTCA
CGTGGTGGACGCCAACGGCACCACTCGCCGGCTCCTCCAGGAGCGTCTGG
GCCGGTTCGAGGCGCCGGCGATACCGTTCCCGGTCGACCGCTACTCAGTC
GAGCGCAAGGAGTTCATGTCGCGACAGACGGGATGTGATCCCACGGTCCA
GCACAAGATTATCAAGAACGACATGAAAGTCTTCGCGGAGGCAACTCTGG
GGAACACGGTAGACAACAGCAAGAGGGCCGGCTTCATCAAGTACGACCGC
AACGTGCTTCGGTTCCAGGCCGTGTGGGACGACCGCGAGAGTCTGTACGG
AGACATACAGCGGTTTGAGATGCACTATTTCCTGGCGGACGACACAATCG
AGATCCGAGCCGTGCACGGCCCCAACTCTGGGAGGGACCCCGTCCCGGTG
ATGGTGAAGAGGGGAAGGATCCCAAAGTCGATCGCCGGAGGCGCTAAGAG
CGAGGCGTACCACTGGAGCGACTTCGACATCGGGGTGGAGGCCACCAAGA
GGAGTAGCCTCCGATCTCGTCTTGTGCACCATGTCCGTCCAATTCCCACG
GCTGCCGCCGACACGCCTCCACACAACCCTAACTGCCGGCGCAACCAAAA
AACACAGCTGAACGTGTACGAGCGGCCGCTGGTTCTGGTGGATGCCGACG
GCCACACCAGAGAGTTCTACAACACCAAGGGCGTTCACCTGGGCGACCCG
ATCCCCCCGTCGCCGGTGTCCGTTCCCGTCATCGAGCCCCCCCTGCTCCC
TCCGTCTGTGGAATGCTTCACCGGAGGCGACGACGACGACGAGCTGGCGT
CGCGGTCGACCTCGCTCATCCCGAGTCCGCCGCGAAAAATTAGGGGCGAG
GACGTCATGTTCCGGTACACGGCCGAGCTTAAGACGGGCGTTCCGGAAGA
CGAGGGGAGGCGTTTCATCATCACGTACTTCAAGGCGGATCGTACGGTGG
TTGTGAGGGAGCCCCCCAAGAGAAACAGCGGCATCATAGGCGGCAACTTC
CTCAGCCGCATGAAGGTGCGGGACGCGTCGGGCAACGTGATCACCGAGTG
CTCCTTCTACGTCGGCGCGGAGGTGACCTTCCACGGCCATTGCTTCCGAG
TCACGGCCGCGGACGACAAAACCCTGCGAAACATGGAGGAGAGGGCCAAT
GCCCCCGGTGGTTTCATCCACTCAGACCCCGTCAAGGCTGCGGAGAACCT
CGCCAGCTGGGTCGACGGGCGGGCCGACCAAGTCAGAGCGTTCCTCCGCG
AGCGTGATCTCAAGGTGGGCTGA
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protein sequence of EsuBft207_14a-0001

>EsuBft207_14 ID=EsuBft207_14|Name=EsuBft207_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=540bp
MAPTTGRSQPLLGAGAGAPTAGFVTNSGLVLQFDAYFKEAVDESPLENHR
VRKCKILVYLEDSSVQIDEYRQENSGMPQGTLVKRHQIPYPEGRPGTYTV
DDIAVGGTIEVYGRRFHVVDANGTTRRLLQERLGRFEAPAIPFPVDRYSV
ERKEFMSRQTGCDPTVQHKIIKNDMKVFAEATLGNTVDNSKRAGFIKYDR
NVLRFQAVWDDRESLYGDIQRFEMHYFLADDTIEIRAVHGPNSGRDPVPV
MVKRGRIPKSIAGGAKSEAYHWSDFDIGVEATKRSSLRSRLVHHVRPIPT
AAADTPPHNPNCRRNQKTQLNVYERPLVLVDADGHTREFYNTKGVHLGDP
IPPSPVSVPVIEPPLLPPSVECFTGGDDDDELASRSTSLIPSPPRKIRGE
DVMFRYTAELKTGVPEDEGRRFIITYFKADRTVVVREPPKRNSGIIGGNF
LSRMKVRDASGNVITECSFYVGAEVTFHGHCFRVTAADDKTLRNMEERAN
APGGFIHSDPVKAAENLASWVDGRADQVRAFLRERDLKVG
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mRNA from alignment at Scaffold_358:227324..232480+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_14a-0001 ID=EsuBft207_14a-0001|Name=EsuBft207_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5157bp|location=Sequence derived from alignment at Scaffold_358:227324..232480+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCCACGACGGGGAGATCACAGCCCCTCCTGGGCGCCGGAGCAGG GGCGCCCACGGCCGGCTTCGTGACAAACTCCGGCCTCGTGCTGCAGTTCG ATGCGTATTTCAAGGAGGCGGTAGACGAGTCGCCGCTGGAGAACCACCGT GTTCGAAAATGCAAGATCTTGGTCTACCTGGAGGACTCGTCGGTGCAGAT CGACGAGTACCGGCAGGAAAACAGCGGGATGCCCCAAGGGACGTTGGTCA AGCGACATCAAATACCCTACCCTGAGGTGCGAGCAGTACTGAAGAAATTC AGCAGTCTGTCGATGTACAATGTATGAAGTCTTGTTTGTGAGTAGTGTTT TTTCAAAATGCTTCTGTTCTGCCTTTTTTCTTACCATATCATTGTAGACT TTTCCTTCGTATCTTCACGTACGGTATGCCCTCCCGCGACTAGTGCGGCC AAAAATCCTCCCTCGTTTTCTTCCTCTCTCACGTGTGGGGGCTGTCGTCA AAGGGAAGACCTGGGACTTACACCGTAGACGACATCGCCGTAGGAGGCAC GATCGAGGTCTACGGCCGGCGGTTTCACGTGGTGGACGCCAACGGCACCA CTCGCCGGCTCCTCCAGGAGCGTCTGGGCCGGTTCGAGGCGCCGGCGATA CCGTTCCCGGTCGACCGCTACTCAGTCGAGCGCAAGGAGTTCATGTCGCG ACAGACGGGATGTGATCCCACGGTCCAGCACAAGATTATCAAGGTTCGGG AGAAAGGACGGTCTAGATAGAGGACCCCTGGGTCGGTCCCAAGCGGCAAA AACATACTATTGTGTGCTATTTTTGTTCCTCACGACTATTATTTTGCATG TTTTGAGGTGCTGTATTTTGTTCGTCAAGACTAATATATTTGCGTGTGTT TCCCTCAAGGAGACATGCCGCGCTAGCTTCTCTGAGGAGTAAGGGCAACC CATTCACGAGGGTTACTTGATCTTGCTTTCGTCCCACAGGATTTCGCACG CATCTGTTTATCCTCCTCCCTCCTCCTCGAAGTTCTGATTTTTGCAACAC CCGGCCGAAAAAGAATTTGCCGTGGTTACCCGCCCCCGCACAACCCCCCC ACGTGACTACAACGCTGTGCAGAACGACATGAAAGTCTTCGCGGAGGCAA CTCTGGGGAACACGGTAGACAACAGCAAGAGGGCCGGCTTCATCAAGTAC GACCGCAACGTGCTTCGGTTCCAGGCCGTGTGGGACGACCGCGAGAGTCT GTACGGAGACATACAGCGGTTTGAGGTAGGTTGACATGCCATGCAGAAGG AGGATGGAACAAATGCGATGGGCTCGTTTCCACCGGCCAGATTTTTGGCC TGGTCTCGGCTTTCTTTGTCGTTCACTACGCTGCGGTGCTGTTCGTCAAA CGCCGTTGCCGGCGTGGCGGCACAACCGCACTCGTGGGTCATTGTCAAGC GTCGTTACTTGGGCAAATTGGAGGGGGCCATGGTAGGAAACTTCCTTACA AAGGAGTTGTGCGTGGAACCGATGCAACACTGCAAGCGTTGGTCGCACTA CATTATCCTGACCTGAACATGCTTCAGGAGACAATCCCACGCCAGAACCC CTACGAGCCAGAGGATCGGTGTTTCGGCTCCCTAGGGAGATCAGTCCGGT GGTCGCACAGCCTGAAAAAGTGCGGCGAGGTTTCCTCTCCTGTGGGATGC TCGCAACATAGGATCGTAGTGGCCCAAGCTTCACCTCTGCAAGGTCCCTT TTGGACGTTCCTCGACCAGCCGCTCTCAAGTATATTGCCATGTCCCCTGT GACCGTTTTGCTCGTGCCGGCGCGCGTCTTGCACACCGCAATACCAACGC CACAAAACTGAAGTGTTGTTACATGTGGCACGACGCGTGTCTGCCAGATG CACTATTTCCTGGCGGACGACACAATCGAGATCCGAGCCGTGCACGGCCC CAACTCTGGGAGGGACCCCGTCCCGGTGATGGTGAAGAGGGGAAGGATCC CAAAGTCGATCGCCGGAGGCGCTAAGAGCGAGGCGTACCACTGGAGCGAC TTCGACATCGGGGTGGAGGTGAACGAAGGAAAACGCTTGGTTGTTTAGGT TGTTTACCGGGAGTAGTTGGGTTTCTGCGGTCCGGCATCCACCACAAGGT GCGGGCGGCGCGCGCGGACATCGCTCGCTCTTCGACTACAGGAGAACGGT CTTGCTATGCGTAGCCTAGGATTTAAGCATGGGCAAAGAGAGTTTCGTCT GGTTCTTGATTCTCGATACCGCGGGTATTTCGTGCGGGCTAGGGGGCGGG TGCGTGGGTGCACGCGCAACACGTGAACATAGCCAGAAACTGTCAACCGA CACAGTCAAACCGGCTCAGATCCTGAAAAACGAGCAGGGTCGAAATATCT GGCTGCCTGGAAGTGGATAGGGGAATGCGTTCTGCCCAAGGTGGACACGT AAAACCAGTGGCAACAACTTGGAGGTGTAGGCCACCAAGAGGAGTAGCCT CCGATCTCGTCTTGTGCACCATGTCCGTCCAATTCCCACGGCTGCCGCCG ACACGCCTCCACACAACCCTAACTGCCGGCGCAACCAAAAAACACAGCTG AACGTGTACGAGCGGCCGCTGGTTCTGGTGGATGCCGACGGCCACACCAG AGAGTTCTACAACACCAAGGGCGTTCACCTGGGCGACCCGATCCCCCCGT CGCCGGTGTCCGTTCCCGTCATCGAGCCCCCCCTGCTCCCTCCGTCTGTG GAATGCTTCACCGGAGGCGACGACGACGACGAGCTGGCGTCGCGGTCGAC CTCGCTCATCCCGAGTCCGCCGCGAAAAATTAGGGGCGAGGACGTCATGT TCCGGTACACGGCCGAGCTTAAGTGAGTTTTACGTCGGATTTCCTATTCA ATTATTCGAGACTTCGGGGGGTTGTAACTACTGTAGACTTCTGATCTGTG TTGCAGTAAGTTGGTTTGGGCTGTGGTACGGTGCGCGACCAGCGCAGAAC CACCGGCGCCTCCAAAAGATCCGGCGGCTCTCTTCTCCAGCTTGTAGCTC GTTTCTTTTTCAGACGTCACAGTTGCGCAGGGGTGACAAAGGGCGCTAGC GTATCATGTACACATTGCCTCTACAGTACATCCCATGATACTACTGCAGT GCTGTAAGCACGACCACAAACGAAAACGCACCCATGCGTAAAATTGAGCA GGACGGGCGTTCCGGAAGACGAGGGGAGGCGTTTCATCATCACGTACTTC AAGGCGGATCGTACGGTGGTTGTGAGGGAGCCCCCCAAGAGAAACAGCGG CATCATAGGCGGCAACTTCCTCAGCCGCATGAAGGTACATAGATCAGTTT GGTCGAGAGCTTTCACTGGTTAGGAAGCACGGTTGTAAGTGAGAGCGGAG CGAGCCAGAGGCCGCGGGAAGTGAGTCCCGCCGCCTACCCCCGGCTCGCC GGTCTTGGTTGTGCTATATGCTAGCCAGCCTCGGATGGGCGTAACGGCTT TCGCTGGGCATTGCACGGTCCGGCGTGTGCTTTGCGTTTCGAGCGGTTTC TGCCGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTCTGT TCTTCTCTCTCGGCACAAGCAACATATATCTTCTCCTTGAACCCCTGTAG ACCCTCCGTTTCCAGCGTTTCATCTTCGTCGATGTCGAGCCCCTTCCATA CGTCCTCTACAACCTTGACCCATTCCGTGGGTTGTCTACCCCTCTTTTTG TTTGCCCACTTCGCCTCCCATACAATTCTCGGCAACCTCTCCTCTCCCAT CCCGCACATGCGATACTGCCATGTCAGCTTCCTCGCGTCTCTTCCAGACC GTAGGGATTGGATCCCCAGTTCTGCCCTCACGGCTGCATTACTTGTGCGC CTGGAGCATCCTAGGATGATTTTCGCTGATTTTATTTGCGCCGCCTCTAG TTCTTTCACTACCTTCTTATTTCCTTCCCACACTTCTCCGGCGTACTCTA GCGGCCGTACGATTACGCTCTTCAAAACCGTCAATTTGATGCGTATATCG AGGTGCCGGTTTGCGAGTATTGGGTGCAGCTTCCCTGCTCGTGCTTTGCC CTGGTTTGTGCCGGGGATCGGGCCATTGACGGTCTGCAAGTATCGCTGAC CAAGGGAAAGTCTGTCACGCCTGATCTACTCTCGTAGAGGCGTCAAGAAA AAATGAAGATATCAAGACCAAATCGAATCGTCACAACGTGTACCTATACC ATTCCGATGGAAGCAACACAATAATATACCCAAGGGAACACGATAATCAA TTTTTCTTCTCGATGTCATCATGATTGTAACGTCGTTGCCGTTGACAAGG TGCGGGACGCGTCGGGCAACGTGATCACCGAGTGCTCCTTCTACGTCGGC GCGGAGGTGACCTTCCACGGCCATTGCTTCCGAGTCACGGCCGCGGACGA CAAAACCCTGCGAAACATGGAGGAGAGGGCCAATGCCCCCGGTGGTTTCA TCCACTCAGACCCCGTCAAGGCTGCGGAGAACCTCGCCAGCTGGGTCGAC GGGCGGGCCGACCAAGTCAGAGCGTTCCTCCGCGAGCGTGATCTCAAGGT GGGCTGA
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Coding sequence (CDS) from alignment at Scaffold_358:227324..232480+

>EsuBft207_14a-0001 ID=EsuBft207_14a-0001|Name=EsuBft207_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1623bp|location=Sequence derived from alignment at Scaffold_358:227324..232480+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCCACGACGGGGAGATCACAGCCCCTCCTGGGCGCCGGAGCAGG
GGCGCCCACGGCCGGCTTCGTGACAAACTCCGGCCTCGTGCTGCAGTTCG
ATGCGTATTTCAAGGAGGCGGTAGACGAGTCGCCGCTGGAGAACCACCGT
GTTCGAAAATGCAAGATCTTGGTCTACCTGGAGGACTCGTCGGTGCAGAT
CGACGAGTACCGGCAGGAAAACAGCGGGATGCCCCAAGGGACGTTGGTCA
AGCGACATCAAATACCCTACCCTGAGGGAAGACCTGGGACTTACACCGTA
GACGACATCGCCGTAGGAGGCACGATCGAGGTCTACGGCCGGCGGTTTCA
CGTGGTGGACGCCAACGGCACCACTCGCCGGCTCCTCCAGGAGCGTCTGG
GCCGGTTCGAGGCGCCGGCGATACCGTTCCCGGTCGACCGCTACTCAGTC
GAGCGCAAGGAGTTCATGTCGCGACAGACGGGATGTGATCCCACGGTCCA
GCACAAGATTATCAAGAACGACATGAAAGTCTTCGCGGAGGCAACTCTGG
GGAACACGGTAGACAACAGCAAGAGGGCCGGCTTCATCAAGTACGACCGC
AACGTGCTTCGGTTCCAGGCCGTGTGGGACGACCGCGAGAGTCTGTACGG
AGACATACAGCGGTTTGAGATGCACTATTTCCTGGCGGACGACACAATCG
AGATCCGAGCCGTGCACGGCCCCAACTCTGGGAGGGACCCCGTCCCGGTG
ATGGTGAAGAGGGGAAGGATCCCAAAGTCGATCGCCGGAGGCGCTAAGAG
CGAGGCGTACCACTGGAGCGACTTCGACATCGGGGTGGAGGCCACCAAGA
GGAGTAGCCTCCGATCTCGTCTTGTGCACCATGTCCGTCCAATTCCCACG
GCTGCCGCCGACACGCCTCCACACAACCCTAACTGCCGGCGCAACCAAAA
AACACAGCTGAACGTGTACGAGCGGCCGCTGGTTCTGGTGGATGCCGACG
GCCACACCAGAGAGTTCTACAACACCAAGGGCGTTCACCTGGGCGACCCG
ATCCCCCCGTCGCCGGTGTCCGTTCCCGTCATCGAGCCCCCCCTGCTCCC
TCCGTCTGTGGAATGCTTCACCGGAGGCGACGACGACGACGAGCTGGCGT
CGCGGTCGACCTCGCTCATCCCGAGTCCGCCGCGAAAAATTAGGGGCGAG
GACGTCATGTTCCGGTACACGGCCGAGCTTAAGACGGGCGTTCCGGAAGA
CGAGGGGAGGCGTTTCATCATCACGTACTTCAAGGCGGATCGTACGGTGG
TTGTGAGGGAGCCCCCCAAGAGAAACAGCGGCATCATAGGCGGCAACTTC
CTCAGCCGCATGAAGGTGCGGGACGCGTCGGGCAACGTGATCACCGAGTG
CTCCTTCTACGTCGGCGCGGAGGTGACCTTCCACGGCCATTGCTTCCGAG
TCACGGCCGCGGACGACAAAACCCTGCGAAACATGGAGGAGAGGGCCAAT
GCCCCCGGTGGTTTCATCCACTCAGACCCCGTCAAGGCTGCGGAGAACCT
CGCCAGCTGGGTCGACGGGCGGGCCGACCAAGTCAGAGCGTTCCTCCGCG
AGCGTGATCTCAAGGTGGGCTGA
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