EsuBft207_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_25a-0001
Unique NameEsuBft207_25a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:91029..92347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQI7
ProteomeIdEsuBft207_25
Protein domainsPF13857
Protein domainsPTHR24198
Protein domainsIPR002110
Protein domainsIPR020683
Ownerapollo_admin@sb-roscoff.fr
Note26s proteasome non-atpase regulatory subunit 10 os:homo sapiens gn:psmd10 pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length873
Hectar predicted targeting categoryother localisation
Evalue3.71e-130
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-01_008830.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameANKRD42
KEGG koko:K06694,ko:K10329,ko:K17593
Descriptionproteasome regulatory particle assembly
COG categoryL
BRITEko00000,ko01009,ko03051,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0044093
GO0031227
GO0051338
GO0051128
GO0031401
GO0031324
GO0072659
GO0031396
GO0043231
GO0030054
GO0032507
GO0045184
GO0030424
GO0005515
GO0005856
GO0051050
GO0016020
GO0051171
GO1902532
GO0000502
GO1903047
GO0042981
GO0043269
GO0044459
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_25aEsuBft207_25aEctocarpus subulatus male Bft15bgeneScaffold_358 91029..92347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_25a-0001-exonagat-exon-57949Ectocarpus subulatus male Bft15bexonScaffold_358 91029..91180 -
EsuBft207_25a-0001-exonagat-exon-57948Ectocarpus subulatus male Bft15bexonScaffold_358 91314..91598 -
EsuBft207_25a-0001-exonEsuBft207_25a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 91912..92347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_25a-0001-cdsEsuBft207_25a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 91029..91180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_25a-0001EsuBft207_25Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 91029..92347 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=873bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGCGCCGAGCCGAAC
GTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACGCCGCCTCGAACGG
CCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGCGGCGACGTGTCGG
TGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGCTACGCGGGAAAGA
CAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGGCTGATCCGGCGGC
GAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCACCGGACTACAAGA
TGAACCCGGTGGTTCACGATGAGGAGCATCAAGACGCAGACACGGGCCCC
TGTATGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAG
CGAAGTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAA
AGCCTAGAGTAGAGGCAGTATGA
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protein sequence of EsuBft207_25a-0001

>EsuBft207_25 ID=EsuBft207_25|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=290bp
MLLLGCPNCSASVNATERTRAIRRGNLAEVKRFLDEGGNVETVGGRFHST
LLTEACRFRATKVIELLLERGAAANVSGGGCWTPLHYACNGPCRGSAAAT
AAAELVTTLVENHGDVDATDFYGRTPLHLACSKGSAAVALALLEAGAEPN
VGDVDGRTPVHHAASNGRRDVIAVLLGFGGDVSVVDRELDTPLHRATRER
QNLAISLLESAGADPAAKNCWGELAGTLAPDYKMNPVVHDEEHQDADTGP
CMACSATKGRHYYFCRSEVLQDLPDSMVLGPDGKPRVEAV
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mRNA from alignment at Scaffold_358:91029..92347-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1319bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGTAGGCGTAGGTGG
TAATTGGTTCCTGTACGATCTGAAAGCAAAATTGCGGTGTGTGGCATCGA
GCATGATCGATTGACATGAAGTGGCGCTGTTTTGCAGCCAACCTTTCAAG
AAATGTTCACTTTCAGCTAGCGACGGATCAATGGCTAGCAAGCTGGACCC
CCGTCAACAACATGAAGTCAACAACAGGCGCAGCCACAACGCAAGCACCA
AACCCTGAGCACCCTTCACCACAAGGTAACCACAGCCACATGAATAATGT
AAGCATAATTCGTCGGCGCCAATATCACGACGACGTTTGTTTATGGCAGG
CGCCGAGCCGAACGTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACG
CCGCCTCGAACGGCCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGC
GGCGACGTGTCGGTGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGC
TACGCGGGAAAGACAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGG
CTGATCCGGCGGCGAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCA
CCGGACTACAAGATGAACCCGGTGGTTCACGATGGTAATAATCAATTGTC
ATTGTTTTTCCATATCTAAACACTACAATTACAACCAAACACATACCGAG
TGCTTGAACCCTCCATGCTTTATCCGTGTTTCCTTTGTGACATTGACGCC
GGTTTCACATCCAACAGAGGAGCATCAAGACGCAGACACGGGCCCCTGTA
TGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAGCGAA
GTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAAAGCC
TAGAGTAGAGGCAGTATGA
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Coding sequence (CDS) from alignment at Scaffold_358:91029..92347-

>EsuBft207_25a-0001 ID=EsuBft207_25a-0001|Name=EsuBft207_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=873bp|location=Sequence derived from alignment at Scaffold_358:91029..92347- (Ectocarpus subulatus male Bft15b)
ATGTTATTACTGGGATGTCCGAATTGTTCCGCCTCCGTAAATGCCACCGA
ACGCACCAGGGCCATCCGAAGGGGGAACCTGGCCGAGGTGAAGCGATTCC
TCGACGAAGGCGGGAACGTGGAAACAGTCGGGGGCCGGTTTCACTCGACT
CTACTGACTGAGGCCTGCCGCTTCCGCGCCACCAAAGTGATCGAATTGCT
TCTCGAGCGGGGCGCCGCCGCCAACGTCTCGGGCGGAGGCTGTTGGACGC
CGCTCCACTACGCCTGCAACGGGCCATGCCGCGGTAGCGCCGCAGCTACT
GCGGCGGCTGAGTTAGTTACGACGCTAGTCGAAAACCATGGGGATGTCGA
CGCCACGGATTTTTACGGGCGGACTCCGTTGCATCTCGCCTGCTCGAAAG
GTTCCGCTGCCGTCGCGCTCGCTCTGTTGGAGGCAGGCGCCGAGCCGAAC
GTGGGGGATGTCGATGGCCGAACGCCCGTTCATCACGCCGCCTCGAACGG
CCGGCGGGACGTGATCGCCGTTTTGCTAGGCTTCGGCGGCGACGTGTCGG
TGGTAGATCGAGAATTGGACACCCCCCTCCATCGAGCTACGCGGGAAAGA
CAGAACCTCGCAATCAGTCTGCTGGAGAGCGCCGGGGCTGATCCGGCGGC
GAAAAATTGCTGGGGGGAACTTGCGGGCACGCTGGCACCGGACTACAAGA
TGAACCCGGTGGTTCACGATGAGGAGCATCAAGACGCAGACACGGGCCCC
TGTATGGCTTGCTCAGCCACGAAGGGTCGTCACTACTACTTCTGCAGGAG
CGAAGTCTTGCAGGACTTGCCGGATAGCATGGTACTCGGCCCAGACGGAA
AGCCTAGAGTAGAGGCAGTATGA
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