EsuBft207_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft207_26a-0001
Unique NameEsuBft207_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:86251..88426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQI8
ProteomeIdEsuBft207_26
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsPTHR10906
Protein domainsIPR023201
Protein domainsTRANSMEMBRANE
Protein domainsIPR002208
Ownerapollo_admin@sb-roscoff.fr
Noteprotein transport protein sec61 subunit alpha isoform 2 os:mus musculus gn:sec61a2 pe:2 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1584
Hectar predicted targeting categoryother localisation
Evalue5.92e-97
EggNOG OGsCOG0201@1|root,KOG1373@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameSEC61A1
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Descriptionprotein transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0007029
GO0006620
GO0002479
GO0043022
GO0005791
GO0030176
GO0034341
GO0006614
GO0016049
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26aEsuBft207_26aEctocarpus subulatus male Bft15bgeneScaffold_358 86251..88426 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26a-0001-exonEsuBft207_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 86251..86738 +
EsuBft207_26a-0001-exonagat-exon-57950Ectocarpus subulatus male Bft15bexonScaffold_358 87331..88426 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26a-0001-exonagat-five_prime_utr-5254Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 86251..86555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26a-0001-cdsEsuBft207_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 86556..86738 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26a-0001-exonagat-three_prime_utr-8086Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 87592..88426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft207_26a-0001EsuBft207_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 86556..87591 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1584bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAGAGAGAGTGAGAGAGAAATTGGCTTCGTTGACCAGAGAGAGAGTGAGA
AAGAGTGAGAAACATGGTTTCTTTGACCTCATACCCGACAAAGTCAACGA
GCGCATCACGGAGTCCTACAATAACTCGTCCCTCCTTACACACAGGTTGC
CGTGTGCCTACGTGGTGTGTGTCTTGGCGATGATCTTCACTTTGTGGTAA
AAGAAAGCACAAGGTTAAATCGGCTTCTTTTCGGCTATACTGGCGCCCCT
TTTTGCGAACGTCACAACGCTTACACAGATTCGGCTGCTGGGCCAGTGGG
AGGAGATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCC
TACTACATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTT
CCACTCCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTT
CGAAGGCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGACGTGGCGAGG
CAGTTGCGGGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTT
GCACCACGTGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCA
TGTGCATCGGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGG
TCGGGAACGGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGA
AATATTCATGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAGT
TGCTCGAGCAAGTAGTAATATTAATAGTACAGCGTGCGCCCAGCATTCCT
ATGTCATGCAGAATTTTGGGGGCTTAGTTGGGGAACGGTTAGCGACGGGG
TGGGCGCTGTGTGTGTGCTTGGGGTACAGTTGAGAGTTGGATTTTACGCA
GTATTTTGTGTTTGTGAGCTAAGTGTGCGGTTGCCGCGCACGTGCCGGCC
TGGTTGTGTCCCGGTTGTGTCCTGTAAGTCGTAGTCGGGGAGGCAAGCAT
CCAGTTGAGCTCCTATGGGGCGAGGCAGCTGTATGAGGTACGTGTGTATG
CAATGAGCACGAAAGACTGGGTTGCGTAGCGCCAGTCTTGAAGCGCCAGT
CTAGAGAGTCGGAAGTTATGAAGTTGCCGCACACGCGATTCAGGGTAGGC
GAAACCTTCGGCCTCGCGAGAGAGACAAAGGTAGAAATCGGAAACCTCGT
GGTTGGTGCTTTGGTCAATTTGTTGGGGACCAGAGGAGGGTCGCCACAAG
AAGCAATCGAGGACTTGGCGACGCGGTACAAAGTCTGATAGACTTGCAAC
TATTGCAGTACTCCTGCCCAACCGTTCAGAACCGAACGTTCGGTCGGCAT
GTAGCTCCTTACATACGGCCGTATGGTCTAAGCATATCTTGACGTAAATG
TTGCGCAGTGGAAATTGTTGGGGGTAATTTGAGCAAAGGTTGCTCGCTGG
TGTTGCTGCGAAAGTGGCAACGCCGCAAGGATGGTGTCATGAGGAATCAG
CTGAGCCCACACGGCAGTCCTGGTGCGCGCCAACGCTTTCTTGCCACCTC
GCGGTACAGTGGGGGGGGGCTCAGTAGTGCCGGT
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protein sequence of EsuBft207_26a-0001

>EsuBft207_26 ID=EsuBft207_26|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MDGYPGKSVPVGGIAYYITPPATLSNVFTDPFHSIFYLTFVLMSCAIFSK
AWMEVSGSASLDVARQLREQQMVMKGHRDTALHHVLDRYIPPAAAFGGMC
IGALTVAADLFGAVGSGTGIIMAVTIIHQYTEIFMQEQKELMGASAF
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mRNA from alignment at Scaffold_358:86251..88426+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2176bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)
GAGAGAGAGTGAGAGAGAAATTGGCTTCGTTGACCAGAGAGAGAGTGAGA
AAGAGTGAGAAACATGGTTTCTTTGACCTCATACCCGACAAAGTCAACGA
GCGCATCACGGAGTCCTACAATAACTCGTCCCTCCTTACACACAGGTTGC
CGTGTGCCTACGTGGTGTGTGTCTTGGCGATGATCTTCACTTTGTGGTAA
AAGAAAGCACAAGGTTAAATCGGCTTCTTTTCGGCTATACTGGCGCCCCT
TTTTGCGAACGTCACAACGCTTACACAGATTCGGCTGCTGGGCCAGTGGG
AGGAGATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCC
TACTACATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTT
CCACTCCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTT
CGAAGGCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGTACGTCATCTT
CGCGGACGGATCTGTCAAGGAAACAGGGGGGTTCATGTGGATGGTCGGGG
GTGGGGGAGAGGGAGGGGCAGGAGACCGTCATTTTTTTCTTTTTAGTTTC
AAATCTTCAGGCACTGAATTGACCCAGGTGGAGCACATTTTTGAGAGCCG
TTTCCAACATGTACTTACCGTATCACAGAGGAGAGGTGAGGATGTCAAGA
TGTTCGCAGTCACTCTCACCGTTCAGCTGTTGTACGGTTTCCTGTCAGAG
ACCAACATGTGCCGGGTTCTGGCGGACGAAACTGAAAACGAATGCGTCCA
TGGAACCCCTCTGTTGTGATGCTAAAGGTTGGCGCGTTGTGTTCCTTCCA
CCCCTTGCCCTCCACCCCACACTCTGCCCGAAAACAAGCTCATCAGGTAT
GTGAGCACGTCGATTATTTTTGCGCGTGGGTCAAACGTGTCGCTTCTGTT
TTTGTTGGGAAAAAATGGTGTGTGTTTCGTCTCTTGCTGACGATGTAGGC
AATATTGCACCCGACGAAACTTACGCCCTGCCTCCCGTTCCGGCCCTTCC
CTGCTCCTGTTTTTCCATCCCCACATTCAGGACGTGGCGAGGCAGTTGCG
GGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTTGCACCACG
TGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCATGTGCATC
GGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGGTCGGGAAC
GGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGAAATATTCA
TGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAGTTGCTCGAG
CAAGTAGTAATATTAATAGTACAGCGTGCGCCCAGCATTCCTATGTCATG
CAGAATTTTGGGGGCTTAGTTGGGGAACGGTTAGCGACGGGGTGGGCGCT
GTGTGTGTGCTTGGGGTACAGTTGAGAGTTGGATTTTACGCAGTATTTTG
TGTTTGTGAGCTAAGTGTGCGGTTGCCGCGCACGTGCCGGCCTGGTTGTG
TCCCGGTTGTGTCCTGTAAGTCGTAGTCGGGGAGGCAAGCATCCAGTTGA
GCTCCTATGGGGCGAGGCAGCTGTATGAGGTACGTGTGTATGCAATGAGC
ACGAAAGACTGGGTTGCGTAGCGCCAGTCTTGAAGCGCCAGTCTAGAGAG
TCGGAAGTTATGAAGTTGCCGCACACGCGATTCAGGGTAGGCGAAACCTT
CGGCCTCGCGAGAGAGACAAAGGTAGAAATCGGAAACCTCGTGGTTGGTG
CTTTGGTCAATTTGTTGGGGACCAGAGGAGGGTCGCCACAAGAAGCAATC
GAGGACTTGGCGACGCGGTACAAAGTCTGATAGACTTGCAACTATTGCAG
TACTCCTGCCCAACCGTTCAGAACCGAACGTTCGGTCGGCATGTAGCTCC
TTACATACGGCCGTATGGTCTAAGCATATCTTGACGTAAATGTTGCGCAG
TGGAAATTGTTGGGGGTAATTTGAGCAAAGGTTGCTCGCTGGTGTTGCTG
CGAAAGTGGCAACGCCGCAAGGATGGTGTCATGAGGAATCAGCTGAGCCC
ACACGGCAGTCCTGGTGCGCGCCAACGCTTTCTTGCCACCTCGCGGTACA
GTGGGGGGGGGCTCAGTAGTGCCGGT
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Coding sequence (CDS) from alignment at Scaffold_358:86251..88426+

>EsuBft207_26a-0001 ID=EsuBft207_26a-0001|Name=EsuBft207_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=444bp|location=Sequence derived from alignment at Scaffold_358:86251..88426+ (Ectocarpus subulatus male Bft15b)
ATGGACGGGTACCCGGGGAAGAGCGTTCCCGTGGGCGGCATCGCCTACTA
CATCACGCCCCCGGCCACCCTGTCCAACGTCTTCACTGACCCCTTCCACT
CCATCTTCTACCTGACTTTCGTCCTCATGTCGTGCGCGATTTTTTCGAAG
GCCTGGATGGAGGTGTCTGGGTCTGCGTCTCTGGACGTGGCGAGGCAGTT
GCGGGAGCAGCAGATGGTCATGAAGGGGCACCGGGACACGGCGTTGCACC
ACGTGCTGGACCGTTACATCCCCCCGGCGGCGGCGTTTGGGGGCATGTGC
ATCGGGGCGCTAACGGTCGCTGCCGACCTCTTCGGGGCTGTGGGGTCGGG
AACGGGCATCATCATGGCCGTCACTATCATACACCAGTACACGGAAATAT
TCATGCAGGAGCAGAAAGAGTTGATGGGGGCGTCAGCTTTTTAG
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