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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FQI8 |
| ProteomeId | EsuBft207_27 |
| Protein domains | TMhelix |
| Protein domains | IPR023201 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR002208 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | protein transport protein sec61 subunit alpha os:dictyostelium discoideum gn:sec61a pe:3 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 729 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 8.03e-105 |
| EggNOG OGs | COG0201@1|root,KOG1373@2759|Eukaryota |
| Ec32 ortholog description | Sec61 |
| Ec32 ortholog | Ec-01_008840.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | SEC61A1 |
| KEGG ko | ko:K10956 |
| KEGG TC | 3.A.5.4,3.A.5.8,3.A.5.9 |
| KEGG Pathway | ko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110 |
| KEGG Module | M00401 |
| GOs | GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680 |
| Description | protein transport |
| COG category | U |
| BRITE | ko00000,ko00001,ko00002,ko02044 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0045047 |
| GO | 0030176 |
| GO | 0016043 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=729bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTG
CGCCAATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGG
TGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTC
CACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGA
TGAGGAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGG
CTGTGGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCG
GTGGGTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCA
GGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCA
TCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTC
AACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTT
ACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCAC
GATTATCGGGCATGCGGGGATGGTTTTGA back to topprotein sequence of EsuBft207_27a-0001 >EsuBft207_27 ID=EsuBft207_27|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=224bp
MYGPLSVLGAGNAILIVCQLFLMGVMLILMDQVLQKGWGIGSGVSLFMCA
NICSTVWWKTFSWVSVTTARGVEKEGAFFAIFHLLLTRPDKVLFGPPRDE
ELTGLPNLVNLAATAAVAMTVIYFQKWRIELPVGVTIHLVVKSQKYRGQE
GRFPIKLFYTSNMPLILQSALVANLYMISQLVNDRSSSSILARVAVVLLL
ALLFSHGKGLRNWPPRLSGMRGWF back to topmRNA from alignment at Scaffold_358:83621..85953+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2333bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
CTCTTCGGCATACTGCTGACCCTAGCCGAGGCTGTCGCCTTCGTGGTATC
GGGGATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCA
TCGTGTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAG
GTCCTCCAGAAAGGGTGAGAGCGAGGTGGATGGACGTCGGTGTCGGCTGC
TAGCGGCTCGCAAGCTGGTAGCAGCGGCAGGGGTTGCAAGGGTTATGCCC
TGTGGTGTGGAGAGGGAAACAATGTGGCCTTCGAGAAGAGAAGGATATTG
AGCATACGGGAATGAGTTGAGGAGGCTTGATTCCTACATCTCGGCTTACA
TGTCACACTCCATAGCTGTGTTGTATCTGCTGCTGTACGGCGACTCACCG
ATGTATTCTGGACGGGTCCGTTGTGTCCAGCGTCTCTTTTCTCCGTGATG
CCGTTGCCACCGCCTCTACTGCTGCTGATGCTTCTTCCTCGCGGTGCGAC
CAGCATTGCGCCTTTTTGTGATGTGTACACCGCTGCCGGTGTTGATGCCT
GACTTGCCTCCTCCCCCGCCCCCCTGCAGGTGGGGGATAGGCTCGGGGGT
GTCGCTCTTCATGTGCGCCAATATCTGCTCGACCGTCTGGTGGAAGACGT
TCAGCTGGGTGTCGGTGACCACGGCGAGGGGGGTGGAGAAGGAGGGTGCC
TTCTTCGCCATCTTCCACCTCCTCCTCACGAGGCCCGACAAGGTGTTGTT
TGGTCCGCCGCGGGATGAGGAGCTGTATGTGTGGGGTGTTGGCGCGCTTT
CCGAGGTTGTTCCGGAGTGTTCCGGAGGTGTTGGGACGATCTCACCTCCA
CGTACACATTTTGCTTGTAGGCCCACGGGTCGCACGGGTTCGGTGTTGAT
GTTGGTACTGCCGTTGGCGGTGGACAAGACACACCGTGAGGCATGCCGTC
AGTGTTGGAATCAGGCCTTCCTCCCTCCCTGCTTTCGGGTGATCCTGCCG
TGCCCCCCGCCCCCTCCCCTTAACGAATCATCCNNNNNNNNNNNNNNNNN
NNNNNNNNNACTCAAAGACGTGTTCTTCAGGACCGGGCTGCCGAACCTTG
TGAACCTGGCGGCCACTGCGGCTGTGGCGATGACGGTTATTTACTTCCAG
AAGTGGCGGATAGAACTACCGGTGGGTGTGACAATACACTTGGTGGTTTG
ATTTTTGCGTGTGAGAGAGAGGAGGTGCGTGTTTTTAGGCTGACATGGAC
CGCGCTGGTGGGTCGCCAACGAACGAGAACAAACGCGTAAGTCTCAGCGA
GTTAAAAAGATCGTAAAGATTTTTCTTCAATCCGCGCAATGTGTCTCTGT
GGTAAGAGCAGTGTTAGGTTGGCATCCCGTCCACGGCCTGTCTGTCTTGC
TTTGTTTCGTCTTTCATTTTCATAGGGTGTCATTTTTGTTCTCAGGTTGG
GACCTGTTGTGGGGTGTGTGTATGGGAAAGGATGTAGCTTGCCTCGGTGA
CAACGTTGAGATAGCGGAATGAAATGATAAAGAGGCGTGCAAGTTGTGGG
GGTTGCGGCCGCCTTCCGGGGACTATATCGCGAAGAAGCCTCGACTCTCG
GAGGTCTGTTCGGCCTTCCAAGAGGACACGTGATGCAACGCTCTCTCTCT
CTGACTGGTCTGTTCGATTTCAAGAGAAGAAGCGCGGGATGCACGCAGCA
GTCCTCGAAAAATGGGTATTAGTTGTTGGCAACGATTAGGGCTGAGAGGT
AAACATAGACAGTTTGTTGAGGTCTGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNCCCCCCCCCCCCCCCCCCCCCCTCG
ATTCGGCATCGGTCGGTGAGATCATGCGATGCGAACGCATGAGGTTATCC
ACCACAGCTGGGCACCGCTGGGATGATCAACTCCACCACACCACACGCTC
AACGATATGGCGCACGCTCAACCGTGTTCCTTGCCGCTCGCCAACGATTC
AGAGCAACCGTAATCTGATCACCGCTTGCTTGGTTTCCTCTGCTGCCGTG
CTCTTTGCCGGGGGGATGGGGGGAATAGGTCAAGTCCCAGAAGTACAGGG
GCCAGGAAGGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCG
CTCATCCTGCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTT
GGTCAACGACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTAC
TCTTACTTGCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCC
CCACGATTATCGGGCATGCGGGGATGGTTTTGA back to topCoding sequence (CDS) from alignment at Scaffold_358:83621..85953+ >EsuBft207_27a-0001 ID=EsuBft207_27a-0001|Name=EsuBft207_27a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=675bp|location=Sequence derived from alignment at Scaffold_358:83621..85953+ (Ectocarpus subulatus male Bft15b)
ATGTACGGCCCCTTGTCTGTCCTCGGGGCGGGGAACGCCATCCTCATCGT
GTGCCAGCTGTTCCTCATGGGGGTGATGCTGATTCTCATGGACCAGGTCC
TCCAGAAAGGGTGGGGGATAGGCTCGGGGGTGTCGCTCTTCATGTGCGCC
AATATCTGCTCGACCGTCTGGTGGAAGACGTTCAGCTGGGTGTCGGTGAC
CACGGCGAGGGGGGTGGAGAAGGAGGGTGCCTTCTTCGCCATCTTCCACC
TCCTCCTCACGAGGCCCGACAAGGTGTTGTTTGGTCCGCCGCGGGATGAG
GAGCTGACCGGGCTGCCGAACCTTGTGAACCTGGCGGCCACTGCGGCTGT
GGCGATGACGGTTATTTACTTCCAGAAGTGGCGGATAGAACTACCGGTGG
GTGTGACAATACACTTGGTGGTCAAGTCCCAGAAGTACAGGGGCCAGGAA
GGGAGGTTCCCTATTAAGCTGTTCTACACGTCCAACATGCCGCTCATCCT
GCAGTCTGCGCTGGTGGCGAACCTCTACATGATTAGCCAGTTGGTCAACG
ACCGCTCCTCCAGCAGCATATTGGCACGTGTTGCGGTTGTACTCTTACTT
GCTTTGCTGTTTTCGCATGGTAAAGGTTTGCGTAATTGGCCCCCACGATT
ATCGGGCATGCGGGGATGGTTTTGA back to top
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