EsuBft1052_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1052_8a-0001
Unique Name	EsuBft1052_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_352	contig	Scaffold_352:420126..421415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1052_8
Owner	apollo_admin@sb-roscoff.fr
Note	f-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon	1
Length	1290
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-15_004800.2
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_8a	EsuBft1052_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_352 420126..421415 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_8a-0001-exon	EsuBft1052_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_352 420126..421415 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_8a-0001-cds	EsuBft1052_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_352 420126..421415 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1052_8a-0001	EsuBft1052_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_352 420126..421415 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_352:420126..421415-
coding sequence from alignment at Scaffold_352:420126..421415-

spliced messenger RNA

>EsuBft1052_8a-0001 ID=EsuBft1052_8a-0001|Name=EsuBft1052_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1290bp|location=Sequence derived from alignment at Scaffold_352:420126..421415- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCAGGGCAAAGGCGTTGCCTTGAGGCTCTGGCCGTCGCCATCAG
AAACACCTCCGACAAAGGAGTTTGGTTCGCTTCAACGAGGACCTTGAAAA
CGGTTTGCCTGGACATTTACTTGTCTTGCCGGAATCGAGCCACTGCTCGG
GCGTGCCACGTGGAGGTCACCGTCGACACACCGCGCCGCTTATGGCTGCG
TGGAGAGGAAGACGCTCTTTCGCTGAACAGCAACGGTCCGCCTTCTCGCA
TTCCGCCGCCCGCAGTGCGCGTAGTATCGCTTGAAGAGTACCCTGCGCAG
GTTCTAGCTCGTGCACCAAAGGAAGAGAGGCCAACTACAACGCTCGATGC
GAGTGGGCTGCCGGCGGACGTCGGCCAGGTGGCGTTGGATGAGCCGAAGC
AGAGCCGAGAGTGGTGGCCAGATTCCGTGGAGGAGCTGAGGTTCGGGAGT
CGATTCAACCATCCACTTGATTCTTCTATCGAATGGCCCGCCTTGGTCAC
GCACCTCTCGTTTGACCACCACTTCGATCAGGTCATCGACGAAGTTTGTT
GGCCGCCTCGGTTGCAGGAGCTCACCTTTCGGCATGCTTTCAGACGACCG
TTGACCAGGGTTGTGTGGCCTTCGTCTCTCCGGAGGCTGAGCTTGGTCGG
CTTCTACAACCAGCCGATAGCGGAGGTCGAGTGGCCATCCTCCTTGGAGG
AGCTACGGTTCGGGGAAAGGTTCAACCACCAGATTCAGAGCGTTGCTTGG
CCGGCGTATCTGGTACGACTGAGCTTTGCGGGCTTGTTCGACCAACCAAT
CCATGAGGTATATTTCCCCGAGTCGCTGCGAGAGCTGAGGTTAGGGCACA
TGTTCAACCAGGCCATAGACGAAGTTCGTTGGCCTCCTCGGTTACAGAAG
CTGACCTTGAGCGAGAAGTTCAACGGAGAGATCGGCGGCGTGACTTTCCC
CGATTCGCTACAGGAGCTCCACTTCGGGTTTTACTTCAACCAACCCCTGA
AAAAAGTCAAGCTGCCGGAGTGCCTGGAGACATTGAGGTTTGGCAACAAC
TTCAACCAGTCGCTAGCCGAAGTGTCTTGGCCGCACGCGCTACGGGACCT
AAGCTTTGGGCACAAATTCAACCAAGTCATCGAAGAAGTTCGTTGGCCGC
CCTCGCTGCAGGACCTAGCGTTTGGTTTGTCCTTTAACCAGCCTATTGGC
AAGATCGAGTGGCCATCCTCGTTGAGGTCGCTGAGGTTCGGACAATCCTT
CAACCATCCGGTAGCAGAAATAGCGTGGCCATCTTGTTGA

protein sequence of EsuBft1052_8a-0001

>EsuBft1052_8 ID=EsuBft1052_8|Name=EsuBft1052_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=429bp
MFSGQRRCLEALAVAIRNTSDKGVWFASTRTLKTVCLDIYLSCRNRATAR
ACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQ
VLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGS
RFNHPLDSSIEWPALVTHLSFDHHFDQVIDEVCWPPRLQELTFRHAFRRP
LTRVVWPSSLRRLSLVGFYNQPIAEVEWPSSLEELRFGERFNHQIQSVAW
PAYLVRLSFAGLFDQPIHEVYFPESLRELRLGHMFNQAIDEVRWPPRLQK
LTLSEKFNGEIGGVTFPDSLQELHFGFYFNQPLKKVKLPECLETLRFGNN
FNQSLAEVSWPHALRDLSFGHKFNQVIEEVRWPPSLQDLAFGLSFNQPIG
KIEWPSSLRSLRFGQSFNHPVAEIAWPSC

mRNA from alignment at Scaffold_352:420126..421415-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1052_8a-0001 ID=EsuBft1052_8a-0001|Name=EsuBft1052_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1290bp|location=Sequence derived from alignment at Scaffold_352:420126..421415- (Ectocarpus subulatus male Bft15b)
ATGTTTTCAGGGCAAAGGCGTTGCCTTGAGGCTCTGGCCGTCGCCATCAG
AAACACCTCCGACAAAGGAGTTTGGTTCGCTTCAACGAGGACCTTGAAAA
CGGTTTGCCTGGACATTTACTTGTCTTGCCGGAATCGAGCCACTGCTCGG
GCGTGCCACGTGGAGGTCACCGTCGACACACCGCGCCGCTTATGGCTGCG
TGGAGAGGAAGACGCTCTTTCGCTGAACAGCAACGGTCCGCCTTCTCGCA
TTCCGCCGCCCGCAGTGCGCGTAGTATCGCTTGAAGAGTACCCTGCGCAG
GTTCTAGCTCGTGCACCAAAGGAAGAGAGGCCAACTACAACGCTCGATGC
GAGTGGGCTGCCGGCGGACGTCGGCCAGGTGGCGTTGGATGAGCCGAAGC
AGAGCCGAGAGTGGTGGCCAGATTCCGTGGAGGAGCTGAGGTTCGGGAGT
CGATTCAACCATCCACTTGATTCTTCTATCGAATGGCCCGCCTTGGTCAC
GCACCTCTCGTTTGACCACCACTTCGATCAGGTCATCGACGAAGTTTGTT
GGCCGCCTCGGTTGCAGGAGCTCACCTTTCGGCATGCTTTCAGACGACCG
TTGACCAGGGTTGTGTGGCCTTCGTCTCTCCGGAGGCTGAGCTTGGTCGG
CTTCTACAACCAGCCGATAGCGGAGGTCGAGTGGCCATCCTCCTTGGAGG
AGCTACGGTTCGGGGAAAGGTTCAACCACCAGATTCAGAGCGTTGCTTGG
CCGGCGTATCTGGTACGACTGAGCTTTGCGGGCTTGTTCGACCAACCAAT
CCATGAGGTATATTTCCCCGAGTCGCTGCGAGAGCTGAGGTTAGGGCACA
TGTTCAACCAGGCCATAGACGAAGTTCGTTGGCCTCCTCGGTTACAGAAG
CTGACCTTGAGCGAGAAGTTCAACGGAGAGATCGGCGGCGTGACTTTCCC
CGATTCGCTACAGGAGCTCCACTTCGGGTTTTACTTCAACCAACCCCTGA
AAAAAGTCAAGCTGCCGGAGTGCCTGGAGACATTGAGGTTTGGCAACAAC
TTCAACCAGTCGCTAGCCGAAGTGTCTTGGCCGCACGCGCTACGGGACCT
AAGCTTTGGGCACAAATTCAACCAAGTCATCGAAGAAGTTCGTTGGCCGC
CCTCGCTGCAGGACCTAGCGTTTGGTTTGTCCTTTAACCAGCCTATTGGC
AAGATCGAGTGGCCATCCTCGTTGAGGTCGCTGAGGTTCGGACAATCCTT
CAACCATCCGGTAGCAGAAATAGCGTGGCCATCTTGTTGA

Coding sequence (CDS) from alignment at Scaffold_352:420126..421415-

>EsuBft1052_8a-0001 ID=EsuBft1052_8a-0001|Name=EsuBft1052_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1290bp|location=Sequence derived from alignment at Scaffold_352:420126..421415- (Ectocarpus subulatus male Bft15b)
ATGTTTTCAGGGCAAAGGCGTTGCCTTGAGGCTCTGGCCGTCGCCATCAG
AAACACCTCCGACAAAGGAGTTTGGTTCGCTTCAACGAGGACCTTGAAAA
CGGTTTGCCTGGACATTTACTTGTCTTGCCGGAATCGAGCCACTGCTCGG
GCGTGCCACGTGGAGGTCACCGTCGACACACCGCGCCGCTTATGGCTGCG
TGGAGAGGAAGACGCTCTTTCGCTGAACAGCAACGGTCCGCCTTCTCGCA
TTCCGCCGCCCGCAGTGCGCGTAGTATCGCTTGAAGAGTACCCTGCGCAG
GTTCTAGCTCGTGCACCAAAGGAAGAGAGGCCAACTACAACGCTCGATGC
GAGTGGGCTGCCGGCGGACGTCGGCCAGGTGGCGTTGGATGAGCCGAAGC
AGAGCCGAGAGTGGTGGCCAGATTCCGTGGAGGAGCTGAGGTTCGGGAGT
CGATTCAACCATCCACTTGATTCTTCTATCGAATGGCCCGCCTTGGTCAC
GCACCTCTCGTTTGACCACCACTTCGATCAGGTCATCGACGAAGTTTGTT
GGCCGCCTCGGTTGCAGGAGCTCACCTTTCGGCATGCTTTCAGACGACCG
TTGACCAGGGTTGTGTGGCCTTCGTCTCTCCGGAGGCTGAGCTTGGTCGG
CTTCTACAACCAGCCGATAGCGGAGGTCGAGTGGCCATCCTCCTTGGAGG
AGCTACGGTTCGGGGAAAGGTTCAACCACCAGATTCAGAGCGTTGCTTGG
CCGGCGTATCTGGTACGACTGAGCTTTGCGGGCTTGTTCGACCAACCAAT
CCATGAGGTATATTTCCCCGAGTCGCTGCGAGAGCTGAGGTTAGGGCACA
TGTTCAACCAGGCCATAGACGAAGTTCGTTGGCCTCCTCGGTTACAGAAG
CTGACCTTGAGCGAGAAGTTCAACGGAGAGATCGGCGGCGTGACTTTCCC
CGATTCGCTACAGGAGCTCCACTTCGGGTTTTACTTCAACCAACCCCTGA
AAAAAGTCAAGCTGCCGGAGTGCCTGGAGACATTGAGGTTTGGCAACAAC
TTCAACCAGTCGCTAGCCGAAGTGTCTTGGCCGCACGCGCTACGGGACCT
AAGCTTTGGGCACAAATTCAACCAAGTCATCGAAGAAGTTCGTTGGCCGC
CCTCGCTGCAGGACCTAGCGTTTGGTTTGTCCTTTAACCAGCCTATTGGC
AAGATCGAGTGGCCATCCTCGTTGAGGTCGCTGAGGTTCGGACAATCCTT
CAACCATCCGGTAGCAGAAATAGCGTGGCCATCTTGTTGA