EsuBft936_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_2a-0001
Unique NameEsuBft936_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:225140..229774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FUH6
ProteomeIdEsuBft936_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length161
Hectar predicted targeting categoryother localisation
Evalue9.7e-84
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionregulation of response to stimulus
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2aEsuBft936_2aEctocarpus subulatus male Bft15bgeneScaffold_350 225140..229774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2a-0001EsuBft936_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 225492..229014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2a-0001-exonagat-exon-78506Ectocarpus subulatus male Bft15bexonScaffold_350 225140..225508 +
EsuBft936_2a-0001-exonagat-exon-78505Ectocarpus subulatus male Bft15bexonScaffold_350 226016..226019 +
EsuBft936_2a-0001-exonEsuBft936_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 226156..226443 +
EsuBft936_2a-0001-exonagat-exon-78507Ectocarpus subulatus male Bft15bexonScaffold_350 228817..229774 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2a-0001-exonagat-five_prime_utr-15107Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 225140..225491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2a-0001-cdsEsuBft936_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 225492..225508 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_2a-0001-exonagat-three_prime_utr-23233Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 229015..229774 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1619bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGG
AAAGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTT
GAAGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGT
TCGGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCG
GGCATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCA
AAACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACG
GAGCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAG
GAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCG
TTACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTG
GCGTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGT
GAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTGAAGGTTCGCCAAGTAG
GAACATGCTTCAACCTTCGAGCATGTCGCGCCGTTTCGTGGGGCTTGGCC
AGGACAGCGTATCGATGCGTTTGTTGGGAGAATGGTGGTATCGTTTTGTG
GAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAAATTTGTTGTGGTTCCC
TGCCCTGAGATGGTGTCCTCCGGACCACGTGTTTGCTACAGTACGTATGT
ATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTTTTTTTTCGAAAGGAGA
CCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCCGGTACCAGGTGTTGTT
AACGGTCAAGTACGTGATGCGCCGGAATCACGCAAAAAAATGGCTGTTTT
TTTCGCACCCCTCGGTAAACACAGTGTACCGAGCTACTGATCAAGGATTG
GGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGGTAACAAAAGGATCCTT
GTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGAGCACGCCATGTCTTAC
TACTTTTTGATTTACCGCTATATGAGAGGCAGTATTCAGCAGCAGCTCGA
TTCTAGAAACGTGTAGCTAACCGCCAGCATTTGTTGAGCACCACCTCCAA
AGCGAACGGGCCAGTCAGTAGTGGACTAATGGAGGCGTGGCAGAGAAGAA
GCATTTCGTCAGCAGGTAGGACGCCTACAACATGGTGGGGTTGGGGTGCT
TGTTGTATTGCCAGCAGCG
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protein sequence of EsuBft936_2a-0001

>EsuBft936_2 ID=EsuBft936_2|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MGKGTSRVKEFLDWVGKVAPAAKIGLTLASIALKVCTGLAVSADTFEAAF
GTSEDLSAFVQDALSAGIEGMTSKAGNRLERLQNSGPSERLPHAGVRGDG
AQKPTPLEGFDYDKLKEVVKSFEVDRTQGDGTRYPSFDTTMKIVDRHGGG
VEWAWVRNGHIDKFAGES
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mRNA from alignment at Scaffold_350:225140..229774+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4635bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGGTGATCAGGCCAGAGACTGGCAGCGTTGAGT
GTTTGAATCGTCCGATGTATGGCAACAAACCCGTTGTTACCTGCGTTCCC
TTACTGCGGTACGCGCGTGTGTTTTCATCCTGGAGGCGTGCGCTTCGCTG
TTCACGTCGGCAGCGTGGCGATGACGAGAGGAAAGACAACTGGCCGCTAA
ATTCATTAGACATGACGTGAAAGAGCGAGGGACTCAAGAGGGAGCGTGTG
CCCTTTGTCGAAAATACTCCGACCACTCACCCGAGTCCATCGTCACGCCT
GAAGTGTTTTATTCTGTCTCTACAGAAACCTTCAATTCAGAGACCTTGAT
AAAGAGGCGATGTATCCTAATTGGAACCCAAAGAGGTAGGCACGAACCAC
ACCCAATCATCCTTGGTATGCGTTGTCCAAACATCGAAGTGCGCCTACGA
AAACTCATCCGCTTGCTATATGGTTTCCGGTGATAAACAGTGGCTCGATC
ACGAACCGCGGCCTTTTATGGCAGAGTAGGGTTAGCATTTTGGAGTGCCA
GCCGTAGGGCACGCCTGATTTCCGTCATGTGTGCGGTGTGTGCGGTTAAG
CGCCGTCCCGCGCCACATTATCTGCAGCCGATTCGCCCCGCCCCTCTGCT
GTATTTGAATGGCCAGGTGAAGGAGTTTTTAGATTGGGTGGGGAAAGTGG
CACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGAAGGTG
TGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTCGGGAC
ATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGGCATCG
AGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAAACAGT
GGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGAGCGCA
AAAGGTGAGGCTAGCTTTGGCGCCTGCGGTAGGTTGGTTTTGGTCTTGCC
AGAAATGGCTGGAACATCAGGCAGAGTCTTCTTGGTTGGCTTCCTGTGTG
TGGGGGATTCCTGCATGCATGTGCATGTCTGATCGTGTGTGTGTCGCTTG
CCCTCGATCTTGTACATGATGAGTCGCGAAGGCTTGGTTGCTTTGGAGTC
CCTACCAGGTATACTACCAAGACATACGCCATGCTCACAATAAAATGTTC
GGCGCCAGATTCCCCCTCTCACATCCCGCCATGGAACGCTTTTAGCCATC
GGGTGTAGTAGTTAATGCTTTGTTTGCTCTCCCCTCCGTGAGCAGAAATC
GCTCGCTCTTGGTGCCTCTTACCGTGTGTGCCATGAGTTGTGCGTACGTA
TCTGTGTCTCTCTCAATCGAGATGAGTACATTCACTGACCTCTCTCTGCG
CTCATGGCCGCCTTTCTGATTGTCGCATTATTTCCATCGCATATTGGGGC
ATTAGATGCTCGATATCCGACTCTGCACTTATTTTCCGCAAGTGGCAAGA
AATGATTTTTTCTAGTCCTCTCACCCGTTCTCTCAAGCCCCGACAACGCT
GCCTAGAGTCCGATTCTCCCTCCCTCCCTCTCCCTCTCTGTCCCGTTCAC
ACACCGCAGCCGGTTCCTGTGATTTCGACGTGCTCATTTTTATCGTTTGC
GCGAGAAGTCAGACCTCTTTCTTTGCGTTTACGCTTACATACTCTGCGTG
CCATGCGTAAGGGGTATTATTAACGACAATAATATCACGCAAAATGTCAC
GGAAGCGTGTCTTCTTGAATATATATGGAGGTATTTTCCCCCGAAAACGT
GAAAAGAAGGAGCCGAGATTTTGGGGGCTTACTACTATCACGGATCCGTG
TTTTTGACAACTATCGGACAAGCGCACCGCGGGCGCTGTAACATCACTGA
GAACGCTAGAAAGACCTGCCAGACTCACATCCAGGTCTGTTGTGGAGATG
GACAAGCGGCAGAAGTGGCGCTCAGTCCGTTCTTGGTCCAAAACTAGACA
TTGCGTGGTGCTCTCGTCTTCAACTGCTGGTGTTGGTGCTGGGGATTTTT
TTCCAATTACACATAGCAAACACGGAAACAGTTAGACCCTGGGGTTACCC
CCCTGCGGAGCAACAAAAAACGGGCATGCTGCGAATAGATTTTGTTTTTT
TTTTGTTTGAAGGGGGCACACAGACAGCAGTCCTACTTACTTGATCAAAG
ACAAGGAACTGGCAATCNCGCCGTCGAACCGGTGGGGTCCGCCATCTATG
ACCGGTCGGGCTGTGGGGTACTGGCTTTTTGTGTGTGCCAGCATCCTCAG
TGAGCGCAGTGGACACCGCGCATTGCTGCGTGAACGCGCTTTGACCATAT
TTGTCCAGTCTGTTGGTGTGTGTTCGTGTGTCTTTTTATGTTGATTCAAA
TTCCGAACGTTTTTATTGGTCCAAGAAGGAAAAGCGCAGTCTATTTGCCA
CGAAAAGTTCACCCGGTTTGGGACACATTTTTGGCCTGAAAATAGGGGTA
ACCCCAGGGTCTAACAGTAGAACGAGTACAGCAGCAGCAACAAGACCTCC
AACGCGCTGATTCCTTCGGTTCGGCTGTCTATTTGATGCCATCTCCCGGC
GTCGTGCTGCTTCGTGGGTATTGAGTGCTTGGGTGCTACTCAATAAGGTG
TGTGAGACATGTGCCACCTCACCAATATGCCGTTGGAAAAAATGCGGCGA
GATGATCTGTTTTTAGTCAAACACGTCAACATCAATCCACTGCAATACGC
AGCAGAAGAGCAACAGGGCCTCCGACACGCTTATTCTTTCGGATTGGCCA
TCTATTTGATGCTGGCCGTCAGCGCGGCTACCGCATTATGGTTGTTGAGC
TCGTCTACCTTTGGGCAGGTGGTGGTCAAAGATGGGGGTCGCAACCGTGA
AAATTGAGCTGCAAACTGAATAAATCGCAAGTACACCCAGGTTGCGACAC
TGTTTTGCGCAGGTTGCTGAAAGCTGAAAACAGCAGGCCGGGTGGATAGG
ATCTTATTCATTATGTTGTTCTCTGTGTCGGGTGCTGCTCATTGCGCTTT
TACCGCTGCTCTATGGTGAGCAACACCAAGTCAACCTGTTTTGTGCCGAG
CAAAGATTGTATTCAGGGAAGGAAACGTACTTTTTGCGATGACATCACGA
ATAGAGCAAGCGAAGAAAAGTCGGCTTTTCTGTTCATCGTTCCGTGGGGA
ATTGCACGACTTTTCCGTTGCGTTAATAACGAGCCTAAGACCCCTCGTTT
TTACCTAAATACACGCCATTTGCTGTATTGTCACACGTTCAAGCGAACGG
CTTCCTTGTCCCTTTCCCCCGGTGAAGCCTACCCCTTTGGAAGGGTTTGA
CTACGACAAGCTTAAGGAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGC
AGGGAGATGGTACTCGTTACCCCAGCTTCGACACCACCATGAAAATCGTG
GACAGGCACGGAGGTGGCGTGGAGTGGGCATGGGTCAGGAACGGACACAT
CGACAAGTTCGCTGGTGAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTG
AAGGTTCGCCAAGTAGGAACATGCTTCAACCTTCGAGCATGTCGCGCCGT
TTCGTGGGGCTTGGCCAGGACAGCGTATCGATGCGTTTGTTGGGAGAATG
GTGGTATCGTTTTGTGGAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAA
ATTTGTTGTGGTTCCCTGCCCTGAGATGGTGTCCTCCGGACCACGTGTTT
GCTACAGTACGTATGTATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTT
TTTTTTCGAAAGGAGACCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCC
GGTACCAGGTGTTGTTAACGGTCAAGTACGTGATGCGCCGGAATCACGCA
AAAAAATGGCTGTTTTTTTCGCACCCCTCGGTAAACACAGTGTACCGAGC
TACTGATCAAGGATTGGGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGG
TAACAAAAGGATCCTTGTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGA
GCACGCCATGTCTTACTACTTTTTGATTTACCGCTATATGAGAGGCAGTA
TTCAGCAGCAGCTCGATTCTAGAAACGTGTAGCTAACCGCCAGCATTTGT
TGAGCACCACCTCCAAAGCGAACGGGCCAGTCAGTAGTGGACTAATGGAG
GCGTGGCAGAGAAGAAGCATTTCGTCAGCAGGTAGGACGCCTACAACATG
GTGGGGTTGGGGTGCTTGTTGTATTGCCAGCAGCG
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Coding sequence (CDS) from alignment at Scaffold_350:225140..229774+

>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
ATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGGAA
AGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGA
AGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTC
GGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGG
CATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAA
ACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGA
GCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAGGA
GGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCGTT
ACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTGGC
GTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGTGA
AAGCTAG
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