EsuBft936_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a	EsuBft936_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 225140..229774 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a-0001	EsuBft936_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 225492..229014 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a-0001-exon	agat-exon-78506	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 225140..225508 +
EsuBft936_2a-0001-exon	agat-exon-78505	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 226016..226019 +
EsuBft936_2a-0001-exon	EsuBft936_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 226156..226443 +
EsuBft936_2a-0001-exon	agat-exon-78507	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 228817..229774 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a-0001-exon	agat-five_prime_utr-15107	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_350 225140..225491 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a-0001-cds	EsuBft936_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 225492..225508 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_2a-0001-exon	agat-three_prime_utr-23233	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 229015..229774 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:225140..229774+
coding sequence from alignment at Scaffold_350:225140..229774+

spliced messenger RNA

>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1619bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGG
AAAGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTT
GAAGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGT
TCGGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCG
GGCATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCA
AAACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACG
GAGCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAG
GAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCG
TTACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTG
GCGTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGT
GAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTGAAGGTTCGCCAAGTAG
GAACATGCTTCAACCTTCGAGCATGTCGCGCCGTTTCGTGGGGCTTGGCC
AGGACAGCGTATCGATGCGTTTGTTGGGAGAATGGTGGTATCGTTTTGTG
GAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAAATTTGTTGTGGTTCCC
TGCCCTGAGATGGTGTCCTCCGGACCACGTGTTTGCTACAGTACGTATGT
ATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTTTTTTTTCGAAAGGAGA
CCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCCGGTACCAGGTGTTGTT
AACGGTCAAGTACGTGATGCGCCGGAATCACGCAAAAAAATGGCTGTTTT
TTTCGCACCCCTCGGTAAACACAGTGTACCGAGCTACTGATCAAGGATTG
GGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGGTAACAAAAGGATCCTT
GTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGAGCACGCCATGTCTTAC
TACTTTTTGATTTACCGCTATATGAGAGGCAGTATTCAGCAGCAGCTCGA
TTCTAGAAACGTGTAGCTAACCGCCAGCATTTGTTGAGCACCACCTCCAA
AGCGAACGGGCCAGTCAGTAGTGGACTAATGGAGGCGTGGCAGAGAAGAA
GCATTTCGTCAGCAGGTAGGACGCCTACAACATGGTGGGGTTGGGGTGCT
TGTTGTATTGCCAGCAGCG

protein sequence of EsuBft936_2a-0001

>EsuBft936_2 ID=EsuBft936_2|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MGKGTSRVKEFLDWVGKVAPAAKIGLTLASIALKVCTGLAVSADTFEAAF
GTSEDLSAFVQDALSAGIEGMTSKAGNRLERLQNSGPSERLPHAGVRGDG
AQKPTPLEGFDYDKLKEVVKSFEVDRTQGDGTRYPSFDTTMKIVDRHGGG
VEWAWVRNGHIDKFAGES

mRNA from alignment at Scaffold_350:225140..229774+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4635bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGGTGATCAGGCCAGAGACTGGCAGCGTTGAGT
GTTTGAATCGTCCGATGTATGGCAACAAACCCGTTGTTACCTGCGTTCCC
TTACTGCGGTACGCGCGTGTGTTTTCATCCTGGAGGCGTGCGCTTCGCTG
TTCACGTCGGCAGCGTGGCGATGACGAGAGGAAAGACAACTGGCCGCTAA
ATTCATTAGACATGACGTGAAAGAGCGAGGGACTCAAGAGGGAGCGTGTG
CCCTTTGTCGAAAATACTCCGACCACTCACCCGAGTCCATCGTCACGCCT
GAAGTGTTTTATTCTGTCTCTACAGAAACCTTCAATTCAGAGACCTTGAT
AAAGAGGCGATGTATCCTAATTGGAACCCAAAGAGGTAGGCACGAACCAC
ACCCAATCATCCTTGGTATGCGTTGTCCAAACATCGAAGTGCGCCTACGA
AAACTCATCCGCTTGCTATATGGTTTCCGGTGATAAACAGTGGCTCGATC
ACGAACCGCGGCCTTTTATGGCAGAGTAGGGTTAGCATTTTGGAGTGCCA
GCCGTAGGGCACGCCTGATTTCCGTCATGTGTGCGGTGTGTGCGGTTAAG
CGCCGTCCCGCGCCACATTATCTGCAGCCGATTCGCCCCGCCCCTCTGCT
GTATTTGAATGGCCAGGTGAAGGAGTTTTTAGATTGGGTGGGGAAAGTGG
CACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGAAGGTG
TGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTCGGGAC
ATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGGCATCG
AGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAAACAGT
GGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGAGCGCA
AAAGGTGAGGCTAGCTTTGGCGCCTGCGGTAGGTTGGTTTTGGTCTTGCC
AGAAATGGCTGGAACATCAGGCAGAGTCTTCTTGGTTGGCTTCCTGTGTG
TGGGGGATTCCTGCATGCATGTGCATGTCTGATCGTGTGTGTGTCGCTTG
CCCTCGATCTTGTACATGATGAGTCGCGAAGGCTTGGTTGCTTTGGAGTC
CCTACCAGGTATACTACCAAGACATACGCCATGCTCACAATAAAATGTTC
GGCGCCAGATTCCCCCTCTCACATCCCGCCATGGAACGCTTTTAGCCATC
GGGTGTAGTAGTTAATGCTTTGTTTGCTCTCCCCTCCGTGAGCAGAAATC
GCTCGCTCTTGGTGCCTCTTACCGTGTGTGCCATGAGTTGTGCGTACGTA
TCTGTGTCTCTCTCAATCGAGATGAGTACATTCACTGACCTCTCTCTGCG
CTCATGGCCGCCTTTCTGATTGTCGCATTATTTCCATCGCATATTGGGGC
ATTAGATGCTCGATATCCGACTCTGCACTTATTTTCCGCAAGTGGCAAGA
AATGATTTTTTCTAGTCCTCTCACCCGTTCTCTCAAGCCCCGACAACGCT
GCCTAGAGTCCGATTCTCCCTCCCTCCCTCTCCCTCTCTGTCCCGTTCAC
ACACCGCAGCCGGTTCCTGTGATTTCGACGTGCTCATTTTTATCGTTTGC
GCGAGAAGTCAGACCTCTTTCTTTGCGTTTACGCTTACATACTCTGCGTG
CCATGCGTAAGGGGTATTATTAACGACAATAATATCACGCAAAATGTCAC
GGAAGCGTGTCTTCTTGAATATATATGGAGGTATTTTCCCCCGAAAACGT
GAAAAGAAGGAGCCGAGATTTTGGGGGCTTACTACTATCACGGATCCGTG
TTTTTGACAACTATCGGACAAGCGCACCGCGGGCGCTGTAACATCACTGA
GAACGCTAGAAAGACCTGCCAGACTCACATCCAGGTCTGTTGTGGAGATG
GACAAGCGGCAGAAGTGGCGCTCAGTCCGTTCTTGGTCCAAAACTAGACA
TTGCGTGGTGCTCTCGTCTTCAACTGCTGGTGTTGGTGCTGGGGATTTTT
TTCCAATTACACATAGCAAACACGGAAACAGTTAGACCCTGGGGTTACCC
CCCTGCGGAGCAACAAAAAACGGGCATGCTGCGAATAGATTTTGTTTTTT
TTTTGTTTGAAGGGGGCACACAGACAGCAGTCCTACTTACTTGATCAAAG
ACAAGGAACTGGCAATCNCGCCGTCGAACCGGTGGGGTCCGCCATCTATG
ACCGGTCGGGCTGTGGGGTACTGGCTTTTTGTGTGTGCCAGCATCCTCAG
TGAGCGCAGTGGACACCGCGCATTGCTGCGTGAACGCGCTTTGACCATAT
TTGTCCAGTCTGTTGGTGTGTGTTCGTGTGTCTTTTTATGTTGATTCAAA
TTCCGAACGTTTTTATTGGTCCAAGAAGGAAAAGCGCAGTCTATTTGCCA
CGAAAAGTTCACCCGGTTTGGGACACATTTTTGGCCTGAAAATAGGGGTA
ACCCCAGGGTCTAACAGTAGAACGAGTACAGCAGCAGCAACAAGACCTCC
AACGCGCTGATTCCTTCGGTTCGGCTGTCTATTTGATGCCATCTCCCGGC
GTCGTGCTGCTTCGTGGGTATTGAGTGCTTGGGTGCTACTCAATAAGGTG
TGTGAGACATGTGCCACCTCACCAATATGCCGTTGGAAAAAATGCGGCGA
GATGATCTGTTTTTAGTCAAACACGTCAACATCAATCCACTGCAATACGC
AGCAGAAGAGCAACAGGGCCTCCGACACGCTTATTCTTTCGGATTGGCCA
TCTATTTGATGCTGGCCGTCAGCGCGGCTACCGCATTATGGTTGTTGAGC
TCGTCTACCTTTGGGCAGGTGGTGGTCAAAGATGGGGGTCGCAACCGTGA
AAATTGAGCTGCAAACTGAATAAATCGCAAGTACACCCAGGTTGCGACAC
TGTTTTGCGCAGGTTGCTGAAAGCTGAAAACAGCAGGCCGGGTGGATAGG
ATCTTATTCATTATGTTGTTCTCTGTGTCGGGTGCTGCTCATTGCGCTTT
TACCGCTGCTCTATGGTGAGCAACACCAAGTCAACCTGTTTTGTGCCGAG
CAAAGATTGTATTCAGGGAAGGAAACGTACTTTTTGCGATGACATCACGA
ATAGAGCAAGCGAAGAAAAGTCGGCTTTTCTGTTCATCGTTCCGTGGGGA
ATTGCACGACTTTTCCGTTGCGTTAATAACGAGCCTAAGACCCCTCGTTT
TTACCTAAATACACGCCATTTGCTGTATTGTCACACGTTCAAGCGAACGG
CTTCCTTGTCCCTTTCCCCCGGTGAAGCCTACCCCTTTGGAAGGGTTTGA
CTACGACAAGCTTAAGGAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGC
AGGGAGATGGTACTCGTTACCCCAGCTTCGACACCACCATGAAAATCGTG
GACAGGCACGGAGGTGGCGTGGAGTGGGCATGGGTCAGGAACGGACACAT
CGACAAGTTCGCTGGTGAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTG
AAGGTTCGCCAAGTAGGAACATGCTTCAACCTTCGAGCATGTCGCGCCGT
TTCGTGGGGCTTGGCCAGGACAGCGTATCGATGCGTTTGTTGGGAGAATG
GTGGTATCGTTTTGTGGAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAA
ATTTGTTGTGGTTCCCTGCCCTGAGATGGTGTCCTCCGGACCACGTGTTT
GCTACAGTACGTATGTATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTT
TTTTTTCGAAAGGAGACCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCC
GGTACCAGGTGTTGTTAACGGTCAAGTACGTGATGCGCCGGAATCACGCA
AAAAAATGGCTGTTTTTTTCGCACCCCTCGGTAAACACAGTGTACCGAGC
TACTGATCAAGGATTGGGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGG
TAACAAAAGGATCCTTGTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGA
GCACGCCATGTCTTACTACTTTTTGATTTACCGCTATATGAGAGGCAGTA
TTCAGCAGCAGCTCGATTCTAGAAACGTGTAGCTAACCGCCAGCATTTGT
TGAGCACCACCTCCAAAGCGAACGGGCCAGTCAGTAGTGGACTAATGGAG
GCGTGGCAGAGAAGAAGCATTTCGTCAGCAGGTAGGACGCCTACAACATG
GTGGGGTTGGGGTGCTTGTTGTATTGCCAGCAGCG

Coding sequence (CDS) from alignment at Scaffold_350:225140..229774+

>EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
ATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGGAA
AGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGA
AGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTC
GGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGG
CATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAA
ACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGA
GCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAGGA
GGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCGTT
ACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTGGC
GTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGTGA
AAGCTAG