Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZS4 |
| ProteomeId | EsuBft936_3 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 219 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.08e-17 |
| EggNOG OGs | 2D50F@1|root,2SWWM@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2193bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCGTGCACAAGTAAAAATCCCAAAATTTCCCAGCACAAGTGACAA
CTTTTCTCTGCACACAGGTGGTTATTCGGAATTCTGAAAATACCGGAAAA
CGCCCTGTTTACAGGCGCATCGCGTGACGGAGAGTTTTTTTTTTTTTTCC
TTGACTTTTTATCTCCGATAAACCGGAAAATCTTGTTTTGTTTTTCGAGA
GGTGTGTTGTTTGTTGATGCCACCAAACTCAACGGTTTTGGACAGATCTC
GGAATTTGCCAGGTGGGATTTTTTTTTTTTTTGAAATATTCGAAATTGAC
GGAGATATACAGGGAAAAACTTGATTTAAAGGGTCAACTTGTTTTGTTTT
ATATGCAATAACTAACCGACCGATTTCAAAATAGAGTGCGGCAAACGATT
CCTCTCGACCATCCCCAGGTGGGAATTTCTTGGTTTTGCTGGGAAAAATC
TGGTTCTCGAGATATTCGCGTTGTTGTTGTTCCGCGCCATGCGGTGACTT
TTTTTTTTCCTGGGCGCACGCGGTGCCCAACAACTGCACACACGGCAACC
CGAACAACACAAAACACGCACACAAGCACCATGGGGAAGGCTAAGGGACG
GGCAAAGAAGAAGAAATTCGGAAATCGCGGACCCGATGGCAGGGCGGTTC
CTAAAAAGCCGAAGCCGGCGCAGCAAAATGATAACTCATCGCCCGGCTCT
GGTGATGCACCAGTCGACGGCGCGGATTTGATGGACGTGGATGAAGAAGG
GACGGCAGCGGCAAACGAGGACGCCAACGATGAGGAGTGGTGCGATGAGG
ATTCCAGCGGTGCAAACGGCAGCAGTGGTGGAGGTCAGTCGATACTGCGT
TTTGCGCACCGGTCTGTAGCGTCCGCAGCAGCGCGCGCCGCAAGAAACGC
GGCGAAAAAAATCTCGCCGCCTGCACTGTCCAGGAGCCAAAAATTCCGAA
ACAGAAAAAGGCTTCTCGGACAAGAAACGAAGGACATGGCACGATTCATG
GGAGCATTCTTGCGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCA
GGAAGAGGTGGAGAGCTCCTCTGTCGGTAACGAGGTTCGTCCTGTAGAGG
AATCGGCGGTGAATTTAGAGATTGCACCGCCTACTGGTCCCTCGAACGAC
GGCAGCGTGTGCGGACATGTAGAGACCAGCAGTAGCTGTGGCAGTGTCGG
CGACATGCCCATAACCACGGGTCACGGGCTTCTGATAGAGGAGTGGTGTA
GCGGTCAGGAGATGAAGGACGCCGAAGAAGCGATGGATGACATTTGCGAT
ACCTCATCAGACGGGTTTCTTGACGGTTTGGATTTCAGCAGCAGCAGCAG
CCGCAGCAGCAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
GCGGCGCCGAAAGGGGCGTCCCCCCCTGTCCTCTTGGCAAAGAGGCAGTA
GACGTTGGGCAGGAGACGGGGGCGAACGATGAGGTCGGCGACAAAATGCG
AACCACTGGAGTACCCGTCGTTGCGGACCTCCTCCCACCAGGGCCCTCCC
GTCGAAGCATCCGAGACGGCCGTTTCGGCGGTAGGTTTGCTGCACCCACC
CGCCGATACGACAACACGGCTGGAAACAACAAAGGTGGGACAGGGAGAGG
CAACAAGGTTCTGGCGCCGGAAGAGGTCCACGACAGATCAGGTGTCACTG
CGATGCAGCTTCAGACGAACAAGTCGCGGCGCGCCGTGCGAAGGGAGAGG
GTGGCGCAGGAGGGCAAGATATGGACGCCTGCGGCGCTGGCTCGGGCAAG
GGATCGAACACGCAAGCACTGGTCGAGGCGTAAGGCAGAGCTCATGGAAA
CCTATCGCAACGCCTACGACGTGCTTCAGAAGGCTGAAGAGACCAACAAC
TACGGATCAGTGGTGGAGGATTCGACGACGATGCTGGATGAAGCACACCT
GGTTCGCACCACCCGTGTCATCCGCACCGTGAAGCATTTCCTGTTTCTCG
AGTGAGTGGGCGGGGAATGTGTAGTGCTGTCTTCTCCTGTCTTGCATCTT
CGTTTGAACCATTGGGCATTGATTGGATCGGCGCTGCCGTTGAAGCACCA
TTCGCGCTGCATGTTCATGCCGGTTAGATATTGCTGAGCGATGGTGCTGT
CTCAGAAGAGGATACTCCGTTTACCACATATCCCCCCGCGAAA back to topprotein sequence of EsuBft936_3a-0001 >EsuBft936_3 ID=EsuBft936_3|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=474bp
MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDGADL
MDVDEEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAA
ARAARNAAKKISPPALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQE
KQQQSEQEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETS
SSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGL
DFSSSSSRSSSRSGGGGGGGGGSSGAERGVPPCPLGKEAVDVGQETGAND
EVGDKMRTTGVPVVADLLPPGPSRRSIRDGRFGGRFAAPTRRYDNTAGNN
KGGTGRGNKVLAPEEVHDRSGVTAMQLQTNKSRRAVRRERVAQEGKIWTP
AALARARDRTRKHWSRRKAELMETYRNAYDVLQKAEETNNYGSVVEDSTT
MLDEAHLVRTTRVIRTVKHFLFLE back to topmRNA from alignment at Scaffold_350:222603..225101- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2499bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)
ATGGTCCGTGCACAAGTAAAAATCCCAAAATTTCCCAGCACAAGTGACAA
CTTTTCTCTGCACACAGGTGGTTATTCGGAATTCTGAAAATACCGGAAAA
CGCCCTGTTTACAGGCGCATCGCGTGACGGAGAGTTTTTTTTTTTTTTCC
TTGACTTTTTATCTCCGATAAACCGGAAAATCTTGTTTTGTTTTTCGAGA
GGTGTGTTGTTTGTTGATGCCACCAAACTCAACGGTTTTGGACAGATCTC
GGAATTTGCCAGGTGGGATTTTTTTTTTTTTTGAAATATTCGAAATTGAC
GGAGATATACAGGGAAAAACTTGATTTAAAGGGTCAACTTGTTTTGTTTT
ATATGCAATAACTAACCGACCGATTTCAAAATAGAGTGCGGCAAACGATT
CCTCTCGACCATCCCCAGGTGGGAATTTCTTGGTTTTGCTGGGAAAAATC
TGGTTCTCGAGATATTCGCGTTGTTGTTGTTCCGCGCCATGCGGTGACTT
TTTTTTTTCCTGGGCGCACGCGGTGCCCAACAACTGCACACACGGCAACC
CGAACAACACAAAACACGCACACAAGCACCATGGGGAAGGCTAAGGGACG
GGCAAAGAAGAAGAAATTCGGAAATCGCGGACCCGATGGCAGGGCGGTTC
CTAAAAAGCCGAAGCCGGCGCAGCAAAATGATAACTCATCGCCCGGCTCT
GGTGATGCACCAGTCGACGGCGCGGATTTGATGGACGTGGATGAAGAAGG
GACGGCAGCGGCAAACGAGGACGCCAACGATGAGGAGTGGTGCGATGAGG
ATTCCAGCGGTGCAAACGGCAGCAGTGGTGGAGGTCAGTCGATACTGCGT
TTTGCGCACCGGTCTGTAGCGTCCGCAGCAGCGCGCGCCGCAAGAAACGC
GGCGAAAAAAATCTCGCCGCCTGCACTGTCCAGGAGCCAAAAATTCCGAA
ACAGAAAAAGGCTTCTCGGACAAGAAACGAAGGACATGGCACGATTCATG
GGAGCATTCTTGCGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCA
GGAAGAGGTGGAGAGCTCCTCTGTCGGTAACGAGGTTCGTCCTGTAGAGG
AATCGGCGGTGAATTTAGAGATTGCACCGCCTACTGGTCCCTCGAACGAC
GGCAGCGTGTGCGGACATGTAGAGACCAGCAGTAGCTGTGGCAGTGTCGG
CGACATGCCCATAACCACGGGTCACGGGCTTCTGATAGAGGAGTGGTGTA
GCGGTCAGGAGATGAAGGACGCCGAAGAAGCGATGGATGACATTTGCGAT
ACCTCATCAGACGGGTTTCTTGACGGTTTGGATTTCAGCAGCAGCAGCAG
CCGCAGCAGCAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
GCGGCGCCGAAAGGGGCGTCCCCCCCTGTCCTCTTGGCAAAGAGGCAGTA
GACGTTGGGCAGGAGACGGGGGCGAACGATGAGGTCGGCGACAAAATGCG
AACCACTGGAGTACCCGTCGTTGCGGACCTCCTCCCACCAGGGCCCTCCC
GTCGAAGCATCCGAGACGGCCGTTTCGGCGGTAGGTTTGCTGCACCCACC
CGCCGATACGACAACACGGCTGGAAACAACAAAGGTGGGACAGGGAGAGG
CAACAAGGTTCTGGCGCCGGAAGAGGTCCACGACAGATCAGGTGTCACTG
CGATGCAGCTTCAGACGAACAAGTCGCGGCGCGCCGTGCGAAGGGAGAGG
GTGGCGCAGGAGGGCAAGATATGGACGCCTGCGGCGCTGGCTCGGGCAAG
GGATCGAACACGCAAGCACTGGTCGAGGCGTAAGGCAGAGCTCATGGAAA
CCTATCGCAACGCCTACGACGTGCTTCAGAAGGTGAGGTCCGTGGTAGCT
GTACCTGATCAATGCTTTTCAATGAAAGCCAACTTTAAATATTTGTTGTG
GTTTTGAGCGTCAGACACTGGCAAATTTGGCGCCTGTTCTCAACACTGCT
GTGGCCACCCATAGGGCGTCACCGCCGTGTTTTTAGGTGCTGATGGTTGC
GTGCCGTGAGCCCATGTTCTTTTCCGTTCTTCCCCCCCGCCCCCCGATAT
CGAAACCTACGGTAGAGATGAGGTCGCCTGAAATTTCTGCTGACAGCGAC
ATCTCCAAAACGCCCGTGTTCTTCCTCCTTCGTCTCAGGCTGAAGAGACC
AACAACTACGGATCAGTGGTGGAGGATTCGACGACGATGCTGGATGAAGC
ACACCTGGTTCGCACCACCCGTGTCATCCGCACCGTGAAGCATTTCCTGT
TTCTCGAGTGAGTGGGCGGGGAATGTGTAGTGCTGTCTTCTCCTGTCTTG
CATCTTCGTTTGAACCATTGGGCATTGATTGGATCGGCGCTGCCGTTGAA
GCACCATTCGCGCTGCATGTTCATGCCGGTTAGATATTGCTGAGCGATGG
TGCTGTCTCAGAAGAGGATACTCCGTTTACCACATATCCCCCCGCGAAA back to topCoding sequence (CDS) from alignment at Scaffold_350:222603..225101- >EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1425bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)
ATGGGGAAGGCTAAGGGACGGGCAAAGAAGAAGAAATTCGGAAATCGCGG
ACCCGATGGCAGGGCGGTTCCTAAAAAGCCGAAGCCGGCGCAGCAAAATG
ATAACTCATCGCCCGGCTCTGGTGATGCACCAGTCGACGGCGCGGATTTG
ATGGACGTGGATGAAGAAGGGACGGCAGCGGCAAACGAGGACGCCAACGA
TGAGGAGTGGTGCGATGAGGATTCCAGCGGTGCAAACGGCAGCAGTGGTG
GAGGTCAGTCGATACTGCGTTTTGCGCACCGGTCTGTAGCGTCCGCAGCA
GCGCGCGCCGCAAGAAACGCGGCGAAAAAAATCTCGCCGCCTGCACTGTC
CAGGAGCCAAAAATTCCGAAACAGAAAAAGGCTTCTCGGACAAGAAACGA
AGGACATGGCACGATTCATGGGAGCATTCTTGCGGCGGGCGCAGCAGGAA
AAGCAGCAACAGTCGGAGCAGGAAGAGGTGGAGAGCTCCTCTGTCGGTAA
CGAGGTTCGTCCTGTAGAGGAATCGGCGGTGAATTTAGAGATTGCACCGC
CTACTGGTCCCTCGAACGACGGCAGCGTGTGCGGACATGTAGAGACCAGC
AGTAGCTGTGGCAGTGTCGGCGACATGCCCATAACCACGGGTCACGGGCT
TCTGATAGAGGAGTGGTGTAGCGGTCAGGAGATGAAGGACGCCGAAGAAG
CGATGGATGACATTTGCGATACCTCATCAGACGGGTTTCTTGACGGTTTG
GATTTCAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCAGCAGCGGCGCCGAAAGGGGCGTCCCCCCCTGTC
CTCTTGGCAAAGAGGCAGTAGACGTTGGGCAGGAGACGGGGGCGAACGAT
GAGGTCGGCGACAAAATGCGAACCACTGGAGTACCCGTCGTTGCGGACCT
CCTCCCACCAGGGCCCTCCCGTCGAAGCATCCGAGACGGCCGTTTCGGCG
GTAGGTTTGCTGCACCCACCCGCCGATACGACAACACGGCTGGAAACAAC
AAAGGTGGGACAGGGAGAGGCAACAAGGTTCTGGCGCCGGAAGAGGTCCA
CGACAGATCAGGTGTCACTGCGATGCAGCTTCAGACGAACAAGTCGCGGC
GCGCCGTGCGAAGGGAGAGGGTGGCGCAGGAGGGCAAGATATGGACGCCT
GCGGCGCTGGCTCGGGCAAGGGATCGAACACGCAAGCACTGGTCGAGGCG
TAAGGCAGAGCTCATGGAAACCTATCGCAACGCCTACGACGTGCTTCAGA
AGGCTGAAGAGACCAACAACTACGGATCAGTGGTGGAGGATTCGACGACG
ATGCTGGATGAAGCACACCTGGTTCGCACCACCCGTGTCATCCGCACCGT
GAAGCATTTCCTGTTTCTCGAGTGA back to top
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