EsuBft936_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft936_9a-0001
Unique Name	EsuBft936_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:179012..183165 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	1174528.JH992898_gene5443
ProteomeId	EsuBft936_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	1117\|Cyanobacteria
Length	271
Hectar predicted targeting category	other localisation
Evalue	3.14e-06
EggNOG OGs	COG4278@1\|root,COG4278@2\|Bacteria,1G3Y0@1117\|Cyanobacteria,1JJS8@1189\|Stigonemataceae
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-03_000100.1
Date last modified	2016-06-14
Date creation	2016-06-14
Description	phenylacetate-CoA ligase activity
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a	EsuBft936_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 179012..183165 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a-0001	EsuBft936_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 179166..181653 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a-0001-exon	agat-exon-78532	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 179012..179759 +
EsuBft936_9a-0001-exon	agat-exon-78533	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 180580..180725 +
EsuBft936_9a-0001-exon	EsuBft936_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 181350..183165 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a-0001-exon	agat-five_prime_utr-15111	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_350 179012..179165 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a-0001-cds	EsuBft936_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 179166..179759 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_9a-0001-exon	agat-three_prime_utr-23242	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 181654..183165 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:179012..183165+
coding sequence from alignment at Scaffold_350:179012..183165+

spliced messenger RNA

>EsuBft936_9a-0001 ID=EsuBft936_9a-0001|Name=EsuBft936_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2710bp|location=Sequence derived from alignment at Scaffold_350:179012..183165+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCCGCCTCGCAAGCCCTTTTGCACTCACTGCTGCCTCTCACTCTCTCCT
CTTTCCCAAGTCTTTCGCTCATCTCTCTTCTCAGCACTCTATCATCTTCT
CCAGCGAGCAGTGCACGCAATCAAACACAGCAGTGCAAGAGAGAGATCGT
CAACATGATCGAAGAAACGCCGATGAACGCCACTGCGCTCCTGCTTCAAA
CCCGCACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGCGTTGGTCG
AAGGGCGTCCCTCCCACGTGCGAAAACGCAGAACCGAACAAGCCGGCTCC
CGCCGCACTTGTTTCATCGATGTCCTCGAGTGACGACGACGAGCCTTCGC
CGAACACCACCAAGCTCTTGCTTGAGAGCCACACCAGCACCGACGGCCAC
ATCTCGCCAAAGCCCCGCTGGACGCGAGGAAACCCGAACACCGAAACCGA
CACTGGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTCTTCCTCTA
CCACTGCCACAGTCGCATTATCCGAGGACGGACGAGAGGAACCCTTGCCG
ACCTCGCTTCGACCTGGCGGCCGCAGCAGCGGTGGCGACCGCAAGTGTTA
CATGGCCTGGAGGTGGTTGCTCGAGGACGAGGCTGCCAGCGAGCCAAGAC
TGCAGAGGCCAACCGAGTACGATCCTGTTGTGCTGCCGAAGCTGATGGAC
GCCGAGCGGGAGCTGCTGTACCGCAACGTGGAGCTCAGGTTACTGGAGGT
CGGTCGGCAATCCACGGACATCCCCGCCCTGGTTGAGGAATACCTCCGGT
TCATGTTTCTTCGGAAGAGGCTCGGGGGTATGCTCACTCTCGACCCTTCT
CCTCTGGTGGACGTTGTCTGGCAGGCTCACATCACGTTGGACAGGGCGTA
CGTCGCGTTCTGCGAGCACACGTTCGGGGGGGAGGGGCTAGAGTGCGGGG
TACTGCACAGGGAGGTCGACGCCTCGCAGCCCATGCTGTACGAGAACACG
GTCGGCTCTTACGAGCACTTCTTCGGCGCCGTTGCCCCCGCGGAGTGGTG
GCCTGCCCCCGCGGTGGTTGTTGGAACTCCGTGTACCGCGCTGGATGGCA
AGGGAGAGGAAGAAGAGGGACCCGTGGATGTCTCGGGAAGGCGAACCGCT
TTCGTCCGCACGGAGGAGAGGAAGTTTCATTTTGCCGAGGAAGGCTGAGT
CCAGCTCATGGCATGGGTATTATTGTACACGTGCAGAGGAGATTCTTAGC
GTGTGGAATTGGCTATTATTTTTTTACATTGTTCATTTTTCGCGGTATAT
ATATATATATGTAAATGCTGATGGCAGTCGACTTTCTTCTTGAGATTCGG
CTGGAGCAAAGGGAGATTGATGGAACCAGGCCGCAGTGTAGTCGTGCAGA
ATTGTTTCGTTGCTGTGTTGGCTATGAACGATTGACAAGTTTCGCTGTGA
AAAGGAACCATAACCGTAGACACTTGCAGCCTACCTTCCTTAACTTTCAT
GTGCATAGAAGAAGCTGACGTACGCCAGGAGGTCACCGATTTTCCAACCG
CAATGACCATGTCTGTCTGCCTGTACTATACGGATACATACATTGAACTT
GTTTTTGCCCCATCTGGGCTTTGTTGAATAGAATCTACTACTGCTGTAGT
CATCTTCGACGTGTTGACCGATTGTTATTGTGTGCACGGATACTATTGTT
CTTGTGTAGACTACAGAATGCGCCACCACTTGAGAAGCTCTACTTATAGT
TTCAGCCGAAGCTGCGGTTGTTACCATATTCTAGGGTCATAATACGAATG
GCCGCTATATAGGTTTTTGTGAAGGGGTTCTTCACCGAGCACACAAATGT
GCTCAAGTTCTTCAATTATGTTTGTGCATAGGCGCGTTCTGTGTGTTACA
TTTCGTTGTTGGCTTCGTGCTTGTTTTTGATGCGATGAGGAAAGGGTGGG
CGGAGAGTTGGTGGTGGGTATATTTTTTGCTTCGTCGTCGACTGCGACCT
CGTTGTTGATATAGCGGGGGGGTTGTCGGCCCAAGCTTCTTACGTACCTA
TTCGTCTAGAGGCATGTTCTGGGCTGGTGATGGGTATTTCGGTGTTGACT
TCGCCCTTGTTTTTGATGTTTTGGGGGGCAGGGGGGGGGTCGTCCGATTC
TTCGCATGTATTCGTTTGCACGAGTGCTTTGGGACTGTATAGTAGGTAGG
GTATATTTTACGGTGGGGAAGCTGGAGCCTTGATCAGCAGCGTGTGCTCT
TCATGCTAGCGGCCCAATACTTTTGGGGGTTGGATCAATTTTTTCGTTTT
CGATGTTTCTCGCGACAGGTCTCATCGAGCCTTGTGTTGTCGGGAGGCAA
ATCGCGCAGTCAGTGGTTGGAGCTCTGTTTGTTCGCGTGGTATGTATATC
TGGTAGATTCAAGAAAAGGGTCCAATGTGCACATCGGTTGGAATCTTGAT
GTTTTTTTTTTTTACGGTCTTGTACAATATGCAATGTCCTTCATAGCCGG
CCGGCGGCAATGGCCGGAAGTACCAAATATGTATGTGTAGTATCGCTGGT
GCTGGCAACGAACGAATGGATGTGCTTTGATTGGAGTTGTTTTGTGGTAC
ACAAAGAAGGTTCGGGCGGGGGTGGGTGCTCACACTTGAGTCTCATGCAT
TTCAAAGGTTTCGGGATTGAAAATCAACGACGATGCGATTACAACCACGA
TCAATTGGCG

protein sequence of EsuBft936_9a-0001

>EsuBft936_9 ID=EsuBft936_9|Name=EsuBft936_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=347bp
MIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGVPPTCENAEPNKPAPA
ALVSSMSSSDDDEPSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTETDT
GADGDKLDESSSSSSTTATVALSEDGREEPLPTSLRPGGRSSGGDRKCYM
AWRWLLEDEAASEPRLQRPTEYDPVVLPKLMDAERELLYRNVELRLLEVG
RQSTDIPALVEEYLRFMFLRKRLGGMLTLDPSPLVDVVWQAHITLDRAYV
AFCEHTFGGEGLECGVLHREVDASQPMLYENTVGSYEHFFGAVAPAEWWP
APAVVVGTPCTALDGKGEEEEGPVDVSGRRTAFVRTEERKFHFAEEG

mRNA from alignment at Scaffold_350:179012..183165+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft936_9a-0001 ID=EsuBft936_9a-0001|Name=EsuBft936_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4154bp|location=Sequence derived from alignment at Scaffold_350:179012..183165+ (Ectocarpus subulatus male Bft15b)
TCCCGCCTCGCAAGCCCTTTTGCACTCACTGCTGCCTCTCACTCTCTCCT
CTTTCCCAAGTCTTTCGCTCATCTCTCTTCTCAGCACTCTATCATCTTCT
CCAGCGAGCAGTGCACGCAATCAAACACAGCAGTGCAAGAGAGAGATCGT
CAACATGATCGAAGAAACGCCGATGAACGCCACTGCGCTCCTGCTTCAAA
CCCGCACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGCGTTGGTCG
AAGGGCGTCCCTCCCACGTGCGAAAACGCAGAACCGAACAAGCCGGCTCC
CGCCGCACTTGTTTCATCGATGTCCTCGAGTGACGACGACGAGCCTTCGC
CGAACACCACCAAGCTCTTGCTTGAGAGCCACACCAGCACCGACGGCCAC
ATCTCGCCAAAGCCCCGCTGGACGCGAGGAAACCCGAACACCGAAACCGA
CACTGGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTCTTCCTCTA
CCACTGCCACAGTCGCATTATCCGAGGACGGACGAGAGGAACCCTTGCCG
ACCTCGCTTCGACCTGGCGGCCGCAGCAGCGGTGGCGACCGCAAGTGTTA
CATGGCCTGGAGGTGGTTGCTCGAGGACGAGGCTGCCAGCGAGCCAAGAC
TGCAGAGGCCAACCGAGTACGATCCTGTTGTGCTGCCGAAGCTGATGGAC
GCCGAGCGGGAGCTGCTGTACCGCAACGTGGAGCTCAGGTTACTGGAGGT
AAGCGAATTAACCGCAGTGATAGAGTACAGCAGTATGCACAGGGACCAGC
ACCACAGCAGTCTCCGCGCTTGTTGTTTTCTTGAGTCATGCGCAGAGTTG
TCAGATCTCGCCACTTTTTTGCTACTACTTGTACTCCATCCAGCTCTACC
TTCCTATAACGCATGTTGATGTATGTACCAACCAACACCTCCGACACGGG
CGGAGCTTTGCCTCGTGGCCACAGCTACTCCATCATACTGTAGCATCCCT
ACGCATGTGAAAAAAAAAGAGGTTCATGTTTTCTCATTTTCGGGGCAGCA
CCAGTTCTCCATCATGTAGACTATTACGACAAAAGACTTCCCGTTCGAGA
TCATACCTTTTGCGTCATCTGCCCAAACGGCATCCTACGCCGGAAAGACG
TCGGCCGGTGTCTAGTCTTGCAATGTAAGTTATTCTGAAAGACTTGACGC
TGCAGTATCGAGATCCACGTGTCGAACGAGGATTCTTGCCTGCCCACCTA
CAACGCCGAACCCGTCGCTTCGACGAAGCCCCCATGCCCGTATGTACATC
TGCCGTGTAATCGTTCTGTTGAGGGCGTGCGTCCGAAATGGGAGAACGAG
AGGACTGATTTGATCTCTCAAAGGTAGACACGTGCATCCGTATACTACGC
CGGCACTTCGCTGCTGCTTGTTACCATTGGTGCCCGCGCTCTGCAGAACA
TGTTATCCCGACTCCCTTTTGCAAACGAATGGGCGCGTTCATCTAGCGCA
AGTGGTCGAATGTTTATTTCAGCACCCGCCTCAAAATTATTTTGTACCTC
TTGCCACTGGTACCTCAGGTCGGTCGGCAATCCACGGACATCCCCGCCCT
GGTTGAGGAATACCTCCGGTTCATGTTTCTTCGGAAGAGGCTCGGGGGTA
TGCTCACTCTCGACCCTTCTCCTCTGGTGGACGTTGTCTGGCAGGCTCAC
ATCACGTTGGACAGGTGTGTTCCGCGGTAAAACAAATCGGTGGCCAGTAC
GATAGTACGATGCACAAACATATAATTCCGACCTTGCCTCACGACGGTCA
TTCTTGTACGTTGTGTTGTACTGGCGTCAAGTGTGGCAATCGAATAGCGG
TTGCAGGCGTGCTACAGCGCCGAAATTGATCAAGGATGTGACGACCCAAT
TATAGTCTTGCGTTTTTTTTTTGGTTTTGTCGTTACTTCAAATGAGCGCT
CACGGCACTTGCGTCCTTTACTCCAACCCGTGGTTGCAAGAGACATGCAT
CGACTCCCCCCCCCGTCCACTATCCGAAAAGGGGTGTGCAAGAGACGCCC
TCCCTTTTTTGTTCCCTGCCTTGAAGATGCAGGGAACAACCACATGCAGC
CCCTCCACTACTTGTTGCAATGCTCCTAGCACAGCATCATCCCCCACCAC
CCCTTTTATATTTCCACGCCACCCTGGACGAGAAAAGAAATGGAGGCGCT
CTTGCCACCAAACCAAAACCCACATCAACTGGGGTGGCGGAGCCAGCACT
CAAAGACCCCCCCTTCCCTTGTTCGGCCTCTGTCATGTCATACGTGTTCT
CCTTGGTGAACCTCAACAACACCCGAACATCAACTCAGGGCGTACGTCGC
GTTCTGCGAGCACACGTTCGGGGGGGAGGGGCTAGAGTGCGGGGTACTGC
ACAGGGAGGTCGACGCCTCGCAGCCCATGCTGTACGAGAACACGGTCGGC
TCTTACGAGCACTTCTTCGGCGCCGTTGCCCCCGCGGAGTGGTGGCCTGC
CCCCGCGGTGGTTGTTGGAACTCCGTGTACCGCGCTGGATGGCAAGGGAG
AGGAAGAAGAGGGACCCGTGGATGTCTCGGGAAGGCGAACCGCTTTCGTC
CGCACGGAGGAGAGGAAGTTTCATTTTGCCGAGGAAGGCTGAGTCCAGCT
CATGGCATGGGTATTATTGTACACGTGCAGAGGAGATTCTTAGCGTGTGG
AATTGGCTATTATTTTTTTACATTGTTCATTTTTCGCGGTATATATATAT
ATATGTAAATGCTGATGGCAGTCGACTTTCTTCTTGAGATTCGGCTGGAG
CAAAGGGAGATTGATGGAACCAGGCCGCAGTGTAGTCGTGCAGAATTGTT
TCGTTGCTGTGTTGGCTATGAACGATTGACAAGTTTCGCTGTGAAAAGGA
ACCATAACCGTAGACACTTGCAGCCTACCTTCCTTAACTTTCATGTGCAT
AGAAGAAGCTGACGTACGCCAGGAGGTCACCGATTTTCCAACCGCAATGA
CCATGTCTGTCTGCCTGTACTATACGGATACATACATTGAACTTGTTTTT
GCCCCATCTGGGCTTTGTTGAATAGAATCTACTACTGCTGTAGTCATCTT
CGACGTGTTGACCGATTGTTATTGTGTGCACGGATACTATTGTTCTTGTG
TAGACTACAGAATGCGCCACCACTTGAGAAGCTCTACTTATAGTTTCAGC
CGAAGCTGCGGTTGTTACCATATTCTAGGGTCATAATACGAATGGCCGCT
ATATAGGTTTTTGTGAAGGGGTTCTTCACCGAGCACACAAATGTGCTCAA
GTTCTTCAATTATGTTTGTGCATAGGCGCGTTCTGTGTGTTACATTTCGT
TGTTGGCTTCGTGCTTGTTTTTGATGCGATGAGGAAAGGGTGGGCGGAGA
GTTGGTGGTGGGTATATTTTTTGCTTCGTCGTCGACTGCGACCTCGTTGT
TGATATAGCGGGGGGGTTGTCGGCCCAAGCTTCTTACGTACCTATTCGTC
TAGAGGCATGTTCTGGGCTGGTGATGGGTATTTCGGTGTTGACTTCGCCC
TTGTTTTTGATGTTTTGGGGGGCAGGGGGGGGGTCGTCCGATTCTTCGCA
TGTATTCGTTTGCACGAGTGCTTTGGGACTGTATAGTAGGTAGGGTATAT
TTTACGGTGGGGAAGCTGGAGCCTTGATCAGCAGCGTGTGCTCTTCATGC
TAGCGGCCCAATACTTTTGGGGGTTGGATCAATTTTTTCGTTTTCGATGT
TTCTCGCGACAGGTCTCATCGAGCCTTGTGTTGTCGGGAGGCAAATCGCG
CAGTCAGTGGTTGGAGCTCTGTTTGTTCGCGTGGTATGTATATCTGGTAG
ATTCAAGAAAAGGGTCCAATGTGCACATCGGTTGGAATCTTGATGTTTTT
TTTTTTTACGGTCTTGTACAATATGCAATGTCCTTCATAGCCGGCCGGCG
GCAATGGCCGGAAGTACCAAATATGTATGTGTAGTATCGCTGGTGCTGGC
AACGAACGAATGGATGTGCTTTGATTGGAGTTGTTTTGTGGTACACAAAG
AAGGTTCGGGCGGGGGTGGGTGCTCACACTTGAGTCTCATGCATTTCAAA
GGTTTCGGGATTGAAAATCAACGACGATGCGATTACAACCACGATCAATT
GGCG

Coding sequence (CDS) from alignment at Scaffold_350:179012..183165+

>EsuBft936_9a-0001 ID=EsuBft936_9a-0001|Name=EsuBft936_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1044bp|location=Sequence derived from alignment at Scaffold_350:179012..183165+ (Ectocarpus subulatus male Bft15b)
ATGATCGAAGAAACGCCGATGAACGCCACTGCGCTCCTGCTTCAAACCCG
CACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGCGTTGGTCGAAGG
GCGTCCCTCCCACGTGCGAAAACGCAGAACCGAACAAGCCGGCTCCCGCC
GCACTTGTTTCATCGATGTCCTCGAGTGACGACGACGAGCCTTCGCCGAA
CACCACCAAGCTCTTGCTTGAGAGCCACACCAGCACCGACGGCCACATCT
CGCCAAAGCCCCGCTGGACGCGAGGAAACCCGAACACCGAAACCGACACT
GGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTCTTCCTCTACCAC
TGCCACAGTCGCATTATCCGAGGACGGACGAGAGGAACCCTTGCCGACCT
CGCTTCGACCTGGCGGCCGCAGCAGCGGTGGCGACCGCAAGTGTTACATG
GCCTGGAGGTGGTTGCTCGAGGACGAGGCTGCCAGCGAGCCAAGACTGCA
GAGGCCAACCGAGTACGATCCTGTTGTGCTGCCGAAGCTGATGGACGCCG
AGCGGGAGCTGCTGTACCGCAACGTGGAGCTCAGGTTACTGGAGGTCGGT
CGGCAATCCACGGACATCCCCGCCCTGGTTGAGGAATACCTCCGGTTCAT
GTTTCTTCGGAAGAGGCTCGGGGGTATGCTCACTCTCGACCCTTCTCCTC
TGGTGGACGTTGTCTGGCAGGCTCACATCACGTTGGACAGGGCGTACGTC
GCGTTCTGCGAGCACACGTTCGGGGGGGAGGGGCTAGAGTGCGGGGTACT
GCACAGGGAGGTCGACGCCTCGCAGCCCATGCTGTACGAGAACACGGTCG
GCTCTTACGAGCACTTCTTCGGCGCCGTTGCCCCCGCGGAGTGGTGGCCT
GCCCCCGCGGTGGTTGTTGGAACTCCGTGTACCGCGCTGGATGGCAAGGG
AGAGGAAGAAGAGGGACCCGTGGATGTCTCGGGAAGGCGAACCGCTTTCG
TCCGCACGGAGGAGAGGAAGTTTCATTTTGCCGAGGAAGGCTGA