EsuBft1510_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1510_5a-0001
Unique NameEsuBft1510_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:78570..80357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G3L2
ProteomeIdEsuBft1510_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length130
Hectar predicted targeting categoryother localisation
Evalue3.2e-05
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_5aEsuBft1510_5aEctocarpus subulatus male Bft15bgeneScaffold_350 78570..80357 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_5a-0001-exonagat-exon-84411Ectocarpus subulatus male Bft15bexonScaffold_350 78570..79118 -
EsuBft1510_5a-0001-exonagat-exon-84412Ectocarpus subulatus male Bft15bexonScaffold_350 79298..79511 -
EsuBft1510_5a-0001-exonEsuBft1510_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 79813..80357 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_5a-0001-exonagat-three_prime_utr-4513Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 78570..78947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_5a-0001-cdsEsuBft1510_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 78948..79118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_5a-0001EsuBft1510_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 78948..80357 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1308bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGAAGC
AGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAAC
TCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCGT
CTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCATT
GCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAAC
AACAAATCGGTACTAGACACCGCTCGTCGATGCCTATTGAAGAAAGAGAT
AGCATTCGGAGACACTTGTCGATATCCTATGGTGTGGATCAACGTAGCAG
CTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTGCGGCGAAA
CATCTCGGTCGGTTGTTGTGCGTTCAATAGGGTCTTATGGCTGGTCATCA
ACACCCATCGTAGGAAACCAATCGCTTGGCAAAGAAACGGTCGACGCTGA
TCGCACCCCTCGATGCTCATTCTAATTGACATGTCGATCCCCATCAGTCG
ACAACGATCCCCATCAGTCGAGAACAATAAGATCCCATCACCCATCACCT
GGAATCCTGTCATCGTTCAAGTGTTTAGGCTCATCGCATTAATACACGTG
ATCACAGATGCGCCCCCGGCATTGTAGGCGGGTGTGGGCTTTTTGCTTCT
CGGCTGGTCGGCGCTACCCTATCTTCCCTTACTCCATGTGATATCTGTTT
TTTTTTCTACTTTATATTTTCCCGTGTACTCTAGTTTTTGATGTACTGCT
GTAGCGCC
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protein sequence of EsuBft1510_5a-0001

>EsuBft1510_5 ID=EsuBft1510_5|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=309bp
MGDRGDDGHESGPQQRTTPSPQPSAQQQSIASFLNTGSGGGGGASGGASG
SGGGGDGRGPEPQASAPQETDVQKLQFPAQVPADVKAAVLVYRPPDGYAI
SAIHNVKGNPSFISFWGVRIHTTHTTSAGTKKRKNFYKCMANHTCRSSVK
LLALTGSTTGATEHLKKVHEIESPSSADDKKKKQETLDKIDQVKQSKIYN
SDKARHNMLGFTKAFVVYSACSFRLVEQEPIRHCLGVMVPKDELEPNRLN
NKSVLDTARRCLLKKEIAFGDTCRYPMVWINVAAHTVINSYHRRKQGAAK
HLGRLLCVQ
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mRNA from alignment at Scaffold_350:78570..80357-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1788bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGTAAG
TGCGTTCGTTTCGATATTGGTTTTCATGCTGTCGTAAAGATGTAAGATAC
AACAAACAGCAGTAGTAGTACAGATTTTACATGTATGTGTCGGGGAACCG
CCGGGGGAATCTTGTGTTTCAACACCCGAGTTCTTATTGTGTGGTCGCCA
CGGTCATCGGTGTGTCTTGTGTCTTGTGAATGCGTTGGCCGTACTAAGGG
AGAGCTACAATCGCTTGAGTTGCTGCGGAGTTACGCTGAAACGAACACGC
GCCGATCGTCCTCTGCTTATCATCTTGCTTGCAAAATATAATGCAGGAAG
CAGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAA
CTCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCG
TCTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCAT
TGCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAA
CAACAAATCGGTAAGTCTATTGAGTTCATGAGTCTCTGGGGGTCGTGTGT
GGTGGTGGGTGGTGTAGTGTGGTGTGCTGCGGACCAAAAGTGCCCCTTAT
ACCTTGGATGATAAGGCTAAGAATAGGATCGATCGCCGGCGATAGGGTAG
GTTTTACGACCTATCGATAGGAATTGCCGCCCGCAATAGGTACTAGACAC
CGCTCGTCGATGCCTATTGAAGAAAGAGATAGCATTCGGAGACACTTGTC
GATATCCTATGGTGTGGATCAACGTAGCAGCTCACACGGTGATCAACAGC
TATCACCGGAGAAAACAGGGTGCGGCGAAACATCTCGGTCGGTTGTTGTG
CGTTCAATAGGGTCTTATGGCTGGTCATCAACACCCATCGTAGGAAACCA
ATCGCTTGGCAAAGAAACGGTCGACGCTGATCGCACCCCTCGATGCTCAT
TCTAATTGACATGTCGATCCCCATCAGTCGACAACGATCCCCATCAGTCG
AGAACAATAAGATCCCATCACCCATCACCTGGAATCCTGTCATCGTTCAA
GTGTTTAGGCTCATCGCATTAATACACGTGATCACAGATGCGCCCCCGGC
ATTGTAGGCGGGTGTGGGCTTTTTGCTTCTCGGCTGGTCGGCGCTACCCT
ATCTTCCCTTACTCCATGTGATATCTGTTTTTTTTTCTACTTTATATTTT
CCCGTGTACTCTAGTTTTTGATGTACTGCTGTAGCGCC
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Coding sequence (CDS) from alignment at Scaffold_350:78570..80357-

>EsuBft1510_5a-0001 ID=EsuBft1510_5a-0001|Name=EsuBft1510_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=930bp|location=Sequence derived from alignment at Scaffold_350:78570..80357- (Ectocarpus subulatus male Bft15b)
ATGGGCGATCGAGGTGATGATGGCCACGAGTCTGGTCCGCAGCAACGCAC
CACGCCATCTCCACAGCCTAGTGCGCAGCAACAATCGATCGCCAGCTTTC
TCAATACCGGCTCGGGCGGCGGCGGCGGCGCCTCGGGCGGCGCTTCGGGC
AGCGGCGGCGGCGGAGATGGCCGCGGCCCGGAACCGCAAGCCTCCGCACC
ACAGGAGACTGATGTACAAAAATTGCAGTTTCCCGCACAAGTACCGGCCG
ATGTGAAGGCTGCTGTCCTCGTCTACCGGCCGCCGGATGGATATGCCATC
AGCGCCATCCACAACGTCAAGGGCAACCCGAGCTTTATTTCCTTTTGGGG
AGTGCGGATCCACACCACCCACACCACATCGGCGGGAACGAAGAAAAGGA
AGAACTTCTACAAGTGTATGGCCAACCATACGTGCCGCTCTAGCGTCAAA
CTACTGGCTTTGACGGGGTCGACCACGGGAGCCACGGAGCACTTGAAGAA
GGTGCATGAGATCGAGAGTCCTTCCAGCGCCGACGATAAGAAGAAGAAGC
AGGAGACGTTGGACAAGATCGACCAGGTCAAGCAGAGCAAAATCTACAAC
TCCGACAAGGCTCGCCACAACATGCTCGGCTTCACGAAAGCATTCGTCGT
CTACAGCGCCTGCTCTTTCAGGCTGGTAGAGCAAGAGCCAATCCGCCATT
GCCTCGGAGTGATGGTCCCGAAGGATGAGCTCGAACCGAACCGTCTCAAC
AACAAATCGGTACTAGACACCGCTCGTCGATGCCTATTGAAGAAAGAGAT
AGCATTCGGAGACACTTGTCGATATCCTATGGTGTGGATCAACGTAGCAG
CTCACACGGTGATCAACAGCTATCACCGGAGAAAACAGGGTGCGGCGAAA
CATCTCGGTCGGTTGTTGTGCGTTCAATAG
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