EsuBft1510_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1510_6a-0001
Unique Name	EsuBft1510_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:74174..77670 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G4Z8
ProteomeId	EsuBft1510_6
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	207
Hectar predicted targeting category	other localisation
Evalue	2.42e-94
EggNOG OGs	2CZK4@1\|root,2SARG@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_6a	EsuBft1510_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 74174..77670 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_6a-0001	EsuBft1510_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 74174..77670 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_6a-0001-exon	EsuBft1510_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 74174..74692 -
EsuBft1510_6a-0001-exon	agat-exon-84414	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 75231..75965 -
EsuBft1510_6a-0001-exon	agat-exon-84415	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 76379..76570 -
EsuBft1510_6a-0001-exon	agat-exon-84413	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 76754..77238 -
EsuBft1510_6a-0001-exon	agat-exon-84416	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 77532..77670 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1510_6a-0001-cds	EsuBft1510_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 74174..74692 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:74174..77670-
coding sequence from alignment at Scaffold_350:74174..77670-

spliced messenger RNA

>EsuBft1510_6a-0001 ID=EsuBft1510_6a-0001|Name=EsuBft1510_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2070bp|location=Sequence derived from alignment at Scaffold_350:74174..77670- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGTTGAGATGTACAACGCCACACTGAAGGTTGTCAACAAGGACTT
GCAGCGACAGCTTGCCCTTGCGATCATCCCGATCTTGTACGCGAACTGTG
ACATTTGGACAACCAAAGTGTCCGGAGAGAAGTTTATCGATTTGTGTTGC
AACTACTTCGCACGTTTCAACGGCGCTCAAACCACCCTTCCCGCGCCAAA
TCTCCCTATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGC
GCATCTTCTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCG
GTGAAGCTTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGT
GGTGCTGAAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCG
AGCGCTTGGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGA
ATCGGCCAGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCG
CGTCATCATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGA
ATCTGTCGTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACAT
GTCAACAGATCTCAGGGGTTCAAGATCGAACTCGAGGACACGCTCGAGAA
GGCGTCCGACGGCAAGCGTTGGAAGGCGAAGCTCTCACAAGCGGTGTCCC
AGCGCTGGATCAGCCTGTGCAAGATGTTGCTCCGCATCCTAGAGCAATGG
GTCGCCATCGACAAGGTCTACGCCAGCAACCGCGAGAAATTCCCTTTGGG
AGATCTGCGCCGTGAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCA
AGGCCGTTATCGAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAG
GCGCTGGAGATGACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGA
GCGTCTCCGAGTGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCA
CCAAGTACGACGACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAAC
ACACGTGTCGCGTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTA
CGGCCGCGAGCTTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTC
TCAGTCCAAACCAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCA
GCTGCCAAGGAGGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGAT
CAAGGAGGAGGTGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAG
CAACGGCACCATCGGACGGGGGGGTGGAGAGCAGTGCGGGAGGGGGGCAA
CCGCAGGCCAAGCGGGCTAAAACCACCTCTACCGCAGCGTCCAGCGCCTC
CGGTGACGGAAACGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACG
ACGACGATGAAGGCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAA
GACCCCAGGAAGGAAGCGGAGGCCATGATGAAGGAGTGGCTCGCAGCTCA
GATTCCACCAGAAGAGCGGACGGAGAACGGAGCAGAATACTGGCGCCTTC
ACGGCAAGAAACACCCCTTCGCTCTCCGATTGGTCGCGCAGGCGGTGTAC
GGCGTCCCTGCCTCAGCGGGTGTGGTGGAGCGAGATTTTAGCATCGCGGA
CTTGTTCATGCCCCGCAAGCGTGCCTCGCTTGATCCAGCGTACTTGGAGA
TGCAGCTCTACCTGCGAGCGCACTTCGACAGCATCCCCATGGACATCCCC
AAGCTGGACGACGCTTCCGTGGCGGCCGCCATCCCGGACCGTTTCAGGGA
CCCACAGGCCGTCGAAGAGGTGCGGGTGTTGGACTTCACCGAGGAGGAGA
AGGAGGTGGGGGTTTTCGACTTCGTGCCGGATGAGGAGGGGGACTTCGTG
CCGGATGAGGAGGGGGAGGACGCCGAGGGCCCCGAGCCGAACGTGCCCGT
GCCCCCTGTCGGAGAAGTGGGGGGGGGGGTGGCTCCAGCGGCTGGAGACG
GGCAATCCACCACCAACTAG

protein sequence of EsuBft1510_6a-0001

>EsuBft1510_6 ID=EsuBft1510_6|Name=EsuBft1510_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=689bp
MIVEMYNATLKVVNKDLQRQLALAIIPILYANCDIWTTKVSGEKFIDLCC
NYFARFNGAQTTLPAPNLPMMVLNFVSTLDAAVRIFYIDSSGFLRTHLLA
VKLFRPAPSLGKVTGKVVLKWFLQVLGQHGIPIERLAGAVTDGGGDVRTG
IGQVATRAWCGPHMLNRVIIDGTGMANTANQSKNLSCRGLMEICKKVVQH
VNRSQGFKIELEDTLEKASDGKRWKAKLSQAVSQRWISLCKMLLRILEQW
VAIDKVYASNREKFPLGDLRREMEEVYSMLSEFKAVIEYSQTTHEATAQK
ALEMTVDLLTYTLDPAERLRVYHVVSIGAEGDTTKYDDIEHEDLTPIGRN
TRVALRKALVARFLPRYGRELDAGGHLFDRTMLLSPNQRKLRYVDALRSS
AAKEGDMRSSSAIKAKIKEEVTDLLVAAIEAIRATAPSDGGVESSAGGGQ
PQAKRAKTTSTAASSASGDGNDDHRRRRRRFLDDDDEGSDSDMDATPVEE
DPRKEAEAMMKEWLAAQIPPEERTENGAEYWRLHGKKHPFALRLVAQAVY
GVPASAGVVERDFSIADLFMPRKRASLDPAYLEMQLYLRAHFDSIPMDIP
KLDDASVAAAIPDRFRDPQAVEEVRVLDFTEEEKEVGVFDFVPDEEGDFV
PDEEGEDAEGPEPNVPVPPVGEVGGGVAPAAGDGQSTTN

mRNA from alignment at Scaffold_350:74174..77670-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1510_6a-0001 ID=EsuBft1510_6a-0001|Name=EsuBft1510_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3497bp|location=Sequence derived from alignment at Scaffold_350:74174..77670- (Ectocarpus subulatus male Bft15b)
ATGATCGTTGAGATGTACAACGCCACACTGAAGGTTGTCAACAAGGACTT
GCAGCGACAGCTTGCCCTTGCGATCATCCCGATCTTGTACGCGAACTGTG
ACATTTGGACAACCAAAGTGTCCGGAGAGAAGTTTATCGGTGAGATATTT
ACAATGTGTTTAGCATGATGTTCTCCGAATGGTTGGTGCTGCCCTGGTAC
ATGGGAAGGATAAAAGCTGCATTTTTTTCACGATTTTTTCAAGACCAACT
AGCTGCAGCGACGTTGTTCTGTAGGACGTGCTGAGTGTGGAATTCATCTG
TATCGAATCACTTACCCCCGCGTTCGGTAGGCGTGTTAGGCAGGATGGGG
GAATTTGTGCCTTCCCTAAATATTTCTTCTAGTCGCCTTTCGGCACGAGG
TGTGTACACAAACCGGACAGAGTCTGCAATAGATTTGTGTTGCAACTACT
TCGCACGTTTCAACGGCGCTCAAACCACCCTTCCCGCGCCAAATCTCCCT
ATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGCGCATCTT
CTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCGGTGAAGC
TTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGTGGTGCTG
AAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCGAGCGCTT
GGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGAATCGGCC
AGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCGCGTCATC
ATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGAATCTGTC
GTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACATGTCAACA
GATCTCAGGGGTTCAAGGTGAAGCGACTCTCTATTTGTCGGGTTGCACAA
CTCTGCTTGTACTGCTTCAGGGTTATGACTCAGGGTTAGGTAGAAGCCTT
GCGATATTCTTCACTTTCCCTATTCTCATCGGTTCCCTTTCAACCCGCCA
TGCCGAAATACCGATGTGCGTTGTTGGCGATGCCCCGCTTTGAATGGCAG
ATCGAACTCGAGGACACGCTCGAGAAGGCGTCCGACGGCAAGCGTTGGAA
GGCGAAGCTCTCACAAGCGGTGTCCCAGCGCTGGATCAGCCTGTGCAAGA
TGTTGCTCCGCATCCTAGAGCAATGGGTCGCCATCGACAAGGTCTACGCC
AGCAACCGCGAGAAATTCCCTTTGGGAGATCTGCGCCGTGAGGTCAGCAG
GGTCCATGTGTTCGGAGGCTTGGAATTTTTGTTTTTTCTCGTATTGTTTT
TCGGGAAAAGGTGGCCCGGGCTCTTGCTGTGTCCGCTAGAAACCAAGTAC
ACCAGCTTATGTAGGAGGAGATGACTTCGTATCACGCATCAAAGTGTGTT
GCTTTCGAGGTCAATGACTCCCACGTTCCCGCTCACGTGGTATTCAAGCT
GTGTGGTGTGTATGTTGCCCTTTTGGGTTTTGGTAGGCGCGGTGGGGGAG
CGCCCCCGGGAAAAATTATGCTGAAGACGAACGCGAGGCACATGATTCCA
TACCGCTGAAGAATATGCTGTTGCCCTCCTCGTTGCACGGTACGTGCCGC
GTCGCATTTAAAAAGCCACTTTCTCCCCCCGTCTCTATATTTTATCCCTT
CTCAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCAAGGCCGTTATC
GAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAGGCGCTGGAGAT
GACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGAGCGTCTCCGAG
TGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCACCAAGTACGAC
GACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAACACACGTGTCGC
GTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTACGGCCGCGAGC
TTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTCTCAGTCCAAAC
CAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCAGCTGCCAAGGA
GGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGATCAAGGAGGAGG
TGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAGCAACGGCACCA
TCGGACGGGGGGGTGGAGAGCAGTGCGGGAGGGGGGCAACCGCAGGCCAA
GCGGGCTAAAACCACCTCTACCGCAGCGTCCAGCGCCTCCGGTGACGGAA
ACGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACGACGACGATGAA
GGCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAAGACCCCAGGAA
GGAAGCGGAGGCCATGATGAAGGAGTGGCTCGCAGCTCAGGTGACAATTG
CATTTGCGCGTGGGTTGTGGTTGTGCGGTCCGCCTCGGCGACACAGCTTG
TATGCGGAACTACGGTGCCCCAGGTGGCAGTTGTGTGAGGAGTTGGTGAT
AATGATTGAAGCAAGTTCAGACCAGCCCCTCTCACCCACCCGTACGTGGT
GGTGCCCATCGGCTTCATGTAAACACAAACGAAAACAAGCTTTCCACATA
CATGTTCAACAGGCGCGGCCGTGAAACCTTCTGTCTCGGTGCTTCAAAAG
CACTGCTCTCTACGTGTTTTCCATCTTGTGGCTCGGTGAAATAGAAATCA
TATGGTTTGACTTGCACTCAAATACCCGAGTTGAGTGCCTATTTGTTTGT
AAGAAATTCCATCTCTATTTCTCAGGAGGGCATCGACCCTGGTTTGTTCA
ACAGACGTCTCGATAGTATTTTTCTGTTGCGATCAATCCACGGGTTTGAC
TTGAAGCGCGACGGCCGTCTCCGCACTTTTATGCCCCAAGATTCAACGCT
CACGATCAATGTTTTCGCACCCATGCAGATTCCACCAGAAGAGCGGACGG
AGAACGGAGCAGAATACTGGCGCCTTCACGGCAAGAAACACCCCTTCGCT
CTCCGATTGGTCGCGCAGGCGGTGTACGGCGTCCCTGCCTCAGCGGGTGT
GGTGGAGCGAGATTTTAGCATCGCGGACTTGTTCATGCCCCGCAAGCGTG
CCTCGCTTGATCCAGCGTACTTGGAGATGCAGCTCTACCTGCGAGCGCAC
TTCGACAGCATCCCCATGGACATCCCCAAGCTGGACGACGCTTCCGTGGC
GGCCGCCATCCCGGACCGTTTCAGGGACCCACAGGCCGTCGAAGAGGTGC
GGGTGTTGGACTTCACCGAGGAGGAGAAGGAGGTGGGGGTTTTCGACTTC
GTGCCGGATGAGGAGGGGGACTTCGTGCCGGATGAGGAGGGGGAGGACGC
CGAGGGCCCCGAGCCGAACGTGCCCGTGCCCCCTGTCGGAGAAGTGGGGG
GGGGGGTGGCTCCAGCGGCTGGAGACGGGCAATCCACCACCAACTAG

Coding sequence (CDS) from alignment at Scaffold_350:74174..77670-

>EsuBft1510_6a-0001 ID=EsuBft1510_6a-0001|Name=EsuBft1510_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2070bp|location=Sequence derived from alignment at Scaffold_350:74174..77670- (Ectocarpus subulatus male Bft15b)
ATGATCGTTGAGATGTACAACGCCACACTGAAGGTTGTCAACAAGGACTT
GCAGCGACAGCTTGCCCTTGCGATCATCCCGATCTTGTACGCGAACTGTG
ACATTTGGACAACCAAAGTGTCCGGAGAGAAGTTTATCGATTTGTGTTGC
AACTACTTCGCACGTTTCAACGGCGCTCAAACCACCCTTCCCGCGCCAAA
TCTCCCTATGATGGTGCTGAATTTCGTGTCAACTCTCGACGCAGCTGTGC
GCATCTTCTACATCGACTCGAGCGGGTTTCTGAGGACACACTTGTTGGCG
GTGAAGCTTTTCCGGCCGGCTCCGTCGCTCGGGAAGGTCACTGGCAAGGT
GGTGCTGAAGTGGTTCCTGCAGGTGCTGGGCCAGCACGGGATACCGATCG
AGCGCTTGGCCGGCGCCGTGACGGACGGCGGGGGTGACGTCCGGACCGGA
ATCGGCCAGGTAGCTACGCGGGCGTGGTGTGGGCCGCACATGCTCAACCG
CGTCATCATCGACGGCACCGGCATGGCCAACACAGCAAACCAGTCCAAGA
ATCTGTCGTGCCGCGGCTTGATGGAGATCTGCAAGAAGGTCGTCCAACAT
GTCAACAGATCTCAGGGGTTCAAGATCGAACTCGAGGACACGCTCGAGAA
GGCGTCCGACGGCAAGCGTTGGAAGGCGAAGCTCTCACAAGCGGTGTCCC
AGCGCTGGATCAGCCTGTGCAAGATGTTGCTCCGCATCCTAGAGCAATGG
GTCGCCATCGACAAGGTCTACGCCAGCAACCGCGAGAAATTCCCTTTGGG
AGATCTGCGCCGTGAGATGGAGGAAGTTTACAGCATGCTGAGCGAGTTCA
AGGCCGTTATCGAGTACTCCCAGACGACGCACGAGGCCACTGCGCAGAAG
GCGCTGGAGATGACTGTGGATCTTCTCACCTACACCCTCGACCCCGCGGA
GCGTCTCCGAGTGTACCACGTCGTTTCTATCGGAGCGGAGGGCGACACCA
CCAAGTACGACGACATCGAGCACGAAGACCTCACGCCGATTGGCCGCAAC
ACACGTGTCGCGTTGAGGAAAGCACTTGTGGCACGGTTTTTGCCGCGCTA
CGGCCGCGAGCTTGACGCTGGCGGCCACCTCTTTGACCGCACGATGCTTC
TCAGTCCAAACCAGAGGAAGCTGAGGTACGTGGACGCTCTGCGCTCTTCA
GCTGCCAAGGAGGGCGACATGCGGTCCTCTAGCGCCATCAAGGCGAAGAT
CAAGGAGGAGGTGACCGACCTCCTTGTCGCGGCCATCGAAGCGATTAGAG
CAACGGCACCATCGGACGGGGGGGTGGAGAGCAGTGCGGGAGGGGGGCAA
CCGCAGGCCAAGCGGGCTAAAACCACCTCTACCGCAGCGTCCAGCGCCTC
CGGTGACGGAAACGATGACCACCGGCGCCGGCGGCGCCGATTTTTAGACG
ACGACGATGAAGGCAGCGACAGCGACATGGACGCGACTCCGGTGGAGGAA
GACCCCAGGAAGGAAGCGGAGGCCATGATGAAGGAGTGGCTCGCAGCTCA
GATTCCACCAGAAGAGCGGACGGAGAACGGAGCAGAATACTGGCGCCTTC
ACGGCAAGAAACACCCCTTCGCTCTCCGATTGGTCGCGCAGGCGGTGTAC
GGCGTCCCTGCCTCAGCGGGTGTGGTGGAGCGAGATTTTAGCATCGCGGA
CTTGTTCATGCCCCGCAAGCGTGCCTCGCTTGATCCAGCGTACTTGGAGA
TGCAGCTCTACCTGCGAGCGCACTTCGACAGCATCCCCATGGACATCCCC
AAGCTGGACGACGCTTCCGTGGCGGCCGCCATCCCGGACCGTTTCAGGGA
CCCACAGGCCGTCGAAGAGGTGCGGGTGTTGGACTTCACCGAGGAGGAGA
AGGAGGTGGGGGTTTTCGACTTCGTGCCGGATGAGGAGGGGGACTTCGTG
CCGGATGAGGAGGGGGAGGACGCCGAGGGCCCCGAGCCGAACGTGCCCGT
GCCCCCTGTCGGAGAAGTGGGGGGGGGGGTGGCTCCAGCGGCTGGAGACG
GGCAATCCACCACCAACTAG