EsuBft1510_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1510_7a-0001
Unique NameEsuBft1510_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:59907..63951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1510_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length151
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7aEsuBft1510_7aEctocarpus subulatus male Bft15bgeneScaffold_350 59907..63951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7a-0001EsuBft1510_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 63444..63699 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7a-0001-exonEsuBft1510_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 59907..60672 -
EsuBft1510_7a-0001-exonagat-exon-84417Ectocarpus subulatus male Bft15bexonScaffold_350 61201..61255 -
EsuBft1510_7a-0001-exonagat-exon-84420Ectocarpus subulatus male Bft15bexonScaffold_350 61555..61702 -
EsuBft1510_7a-0001-exonagat-exon-84419Ectocarpus subulatus male Bft15bexonScaffold_350 63238..63510 -
EsuBft1510_7a-0001-exonagat-exon-84418Ectocarpus subulatus male Bft15bexonScaffold_350 63677..63951 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7a-0001-exonagat-three_prime_utr-4514Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 59907..60672 -
EsuBft1510_7a-0001-exonagat-three_prime_utr-4515Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 61201..61255 -
EsuBft1510_7a-0001-exonagat-three_prime_utr-4516Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 61555..61702 -
EsuBft1510_7a-0001-exonagat-three_prime_utr-4517Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 63238..63443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7a-0001-cdsEsuBft1510_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 63444..63510 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1510_7a-0001-exonagat-five_prime_utr-2940Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 63700..63951 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1510_7a-0001 ID=EsuBft1510_7a-0001|Name=EsuBft1510_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1517bp|location=Sequence derived from alignment at Scaffold_350:59907..63951- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TACCCCACAGAGATTACCCTCTTGTTCTGTATACAATACCCCAACACTTC
TGTGAGTTCTGTGACGGTCATGCCACAAAACCCTACACTTCTGTGAGTTC
TGTAGCACATCCCGTACCCTACAGAGATTACCCTCCGGTTCTGTAACAGA
TCCAATACCCCACAGACATTACCCGTACCCTACAGAACCTAACCTTNTAC
CCTCTTGTTCTGTATACAATACCCCAACACTTCTGTGAGTTCTGTGACGG
TCATGCCACAAAACCCTACACTTCTAGCGAGATCTGTGCACCACGCGGAA
CACATGTTTATAAATCGGCACAGCCCGCATGCAGTTGCATAAGCATGAGA
GGTGGTGCCAATGGTCCAAGCCTAATCCTTCCGCTCAAGCAACGAGCCGT
GTGATAACAAGTCGGTGACAAAGAAGATGGTGACAGCTTGTCAATCCTGT
GCTTTGCCGTTCAGGTGAAACTGGCCGGCACGGTGGGCGTGCGGGTGGAG
GAGCTCACGCCCCACCGATCCGTCGTGAAAGTTGCCAACGTGCGACGAGT
GCAGAACCACCTCGGGAGCGTGCACGCGCGCGGCATGGCTCTCGCCTCGG
AATCAGCCACGGGAATCCTGGTCGGCATGAGCGTGGCCGACAGCCGGTTG
CGCCTGTGCAAGAGCATGGCGATCGATTTCACAAGGCTGTCGCAAGCGAA
GAGCAGCTCGCCGCCGTTCGAGACCAGGAAAAGGGGGAGGCGAATGTACA
GGTGACGGTTACAGATGAATTCGGGAAAGAGCCTATCCGAGCGGAATTCG
TGTGGGCCTGGGTCCCCAAGCGATGGAAAAAAAAATCAGTAGTAAAAAAG
AGCCAGAGGAACGGTTGTGAATAGAAATATGTAGAACAGTCGGTGGAAAC
GGCCACGCTGTGGATACTGAGGATAGCGAGAATGGTATATGGAAACAGCA
ATGAGATTCGTTCTGGGCGTTGCTTTGTTTGCCAGAGGGCGCCCGGGGGG
TGGGGGGTGGGGTGGGGTGGGGGGGTCCCCTTCCTCTGAGCCGCGTGAGG
CAATTGTTTGCTGGAAGTTGGGAACGTTCCTGAGACGGACGGCTTGGGCT
TCTTGTCGTACAGAGTGTCGTTGTTGTTGTTGTTGTTGTTGTCTTTTGGC
CAAAAAAAGCCACTCAGGGCTTACCTCATGTCCGTGCCGACCGGGTGGTC
CAACGTACGCGTGTAAAAGGTGAAGAAACCGGTGATCGTTGTGGCATACC
CTCGTGTTGCTCAAGTACCAGGCTACCGCATGCAGTAGTAGCGCAAACCT
TGCGCATATGGTTGTGTTGTTTTGGAAGTCGGCTGGTAGGTACGAATCAC
GTGTAGAGGTGGACGCCAACGCCGCGGCAGTTGTCATCGACGGCAAGCGT
CTGGGGCACACGGGGCGCAACCCTCGCTGCTACCGCCCTCGGCACCGTCC
CTGCCTTCGCCTCCACTCCTCCCTCTGCCCCCTTGTCTGCCTAGATCTAC
GAATTGGATACTGTCGT
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protein sequence of EsuBft1510_7a-0001

>EsuBft1510_7 ID=EsuBft1510_7|Name=EsuBft1510_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=29bp
MPQNPTLLARSVHHAEHMFINRHSPHAVA
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mRNA from alignment at Scaffold_350:59907..63951-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1510_7a-0001 ID=EsuBft1510_7a-0001|Name=EsuBft1510_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4045bp|location=Sequence derived from alignment at Scaffold_350:59907..63951- (Ectocarpus subulatus male Bft15b)
TACCCCACAGAGATTACCCTCTTGTTCTGTATACAATACCCCAACACTTC
TGTGAGTTCTGTGACGGTCATGCCACAAAACCCTACACTTCTGTGAGTTC
TGTAGCACATCCCGTACCCTACAGAGATTACCCTCCGGTTCTGTAACAGA
TCCAATACCCCACAGACATTACCCGTACCCTACAGAACCTAACCTTNTAC
CCTCTTGTTCTGTATACAATACCCCAACACTTCTGTGAGTTCTGTGACGG
TCATGCCACAAAACCCTACACTTCTGTGAGTTCTGTAGCACATCCCGTAC
CCTACAGAGATTACCCTCCGGTTCTGTAACAGATCCAATACCCCACAGAC
ATTACCCGTACCCTACAGAACCTCACCTTCACTTCATGTTCTCACCTCGT
CATGATCATGATCATGTTTGGTATTGTTGTCTTGAACACAGAGCGAGATC
TGTGCACCACGCGGAACACATGTTTATAAATCGGCACAGCCCGCATGCAG
TTGCATAAGCATGAGAGGTGGTGCCAATGGTCCAAGCCTAATCCTTCCGC
TCAAGCAACGAGCCGTGTGATAACAAGTCGGTGACAAAGAAGATGGTGAC
AGCTTGTCAATCCTGTGCTTTGCCGTTCAGGTGAAACTGGCCGGCACGGT
GGGCGTGCGGGTGGAGGAGCTCACGCCCCACCGATCCGTCGTGAAAGTTG
CCAACGTGCGACGAGTGAGTGGGGCTGAAGTATAGCATTTGTCGTGGAGT
AAATTAAGTAGAGGTCCTTGTGTAGTGCCCGGTATGTGCGCAGAAAAATC
ACCGGCACTACACCGGGCCGGCACTACAGACAGTGTTTAAAATACTCGCA
ATGGGATGGAAATTCAGCGTTTGCCCGCCGAAAACAGCGGCACCTCTTCA
ACCGGCACTGAACACCAACCAGGGATCTCTATGCATAGACAGTACTTCTG
TAGCAGTAGTCTAGTAGTGGGTAGTAGTACAATAGTTGCCGCTGCTGTTG
GTGGGAGTGATAAGTGTAGGTGGTAATGGTCGTGACGTTGCTGCCATGGC
CTGTTGTCGTTGTTGTTGCTGTAGTTGTTGCTGAGGCTTGGTGTGTCACG
CCGGTTCTGCTCGCTGTTGGGAGTGGCCTGTTCTTGCTTGCTGCCACTTC
TGTTGCTCTTCCGAACGAAGCGCATCCATCTCCACATCTATCTATGCTGT
CCAGTCATGGCAACTAACCAGCCATGTCATTAAGCACACTCTCGCGCGTG
AAATACGAGTTTGTTTCCAACCACGATAAAACCCATCGTCTGGCACCAAC
AATGTGTATGTAACTTAATAGTCTAGTCTAGTGATCGCGGTGTTCACAAC
GACGGAATTGTGTTTGGCAATCCCAGACGCAGAACCGCTTCGGGGCTGTC
CAGTCATGGCAACTGAACAGCAATGCACACTCTCGCATGAAATTCGAGTT
ATTAACCACGACAACTAATACAGTTAGCGCCGCCATTTAAGAACCTCTTA
TTTAGGCCGAGGTTCGTTTCTTGCCTTCTCTGGTCTATGGGGTACCCCAA
CGGCGACTACAATATCTAGGTTTTTGCGTGGGCTTTATGACCGAGCCCTG
TTCTTTTGACCAAGTTCTTCAAGTTTTCGTTTCTTGAGCCGCAATTTCGT
AGCTCCCAGGTTCTTATGTGCGGGCGCTATATGTAACTGTATGGCACCAA
CGATCGCGGTGTTCACACCGACGGATGTTTTTTCGTCGATCCCAGATGCA
GAACCGCTTCGGGGCTGTCCAGTCACGGCAACCGAAGAACGACAGCATGA
AGCACACGCATCCTACTCGTGACTAAAATCCATGTGATATGTGATCGTGG
TGATAACTATGTCGGAATCGATTTTGTCGATACCAGCTGCACAACCGCAT
CTGAGCTGTCCTGTCATGTCGATTGAGCAGCTACGACACCCACACGGTCT
CGCGCCAAGAAGATCCAATCTTATCCACTACAAATAATACTCATGAACCA
ACAGGTAGAGCCAACCAAAACAGGGGACCACGAGAGCGAGCGGTGTCTTC
ACCCTCGGAATGTTTTGTTTGTCGATCCCCCAGTAGGCGCAAAACCACAT
CCTTGAGTAGCCCAGTGATGGCAACTGACGAGCGACGACACGTGCTGCCA
TAAAAATATACCAAGTACGACGCAATTTATGCTTTTACTGTACCAACAAA
GTACGGATTACAAGCGCGGTGTCTTGATGTTATCGATCCTGCCCGATAGG
TGCAGAACCACCTCGGGAGCGTGCACGCGCGCGGCATGGCTCTCGCCTCG
GAATCAGCCACGGGAATCCTGGTCGGCATGAGCGTGGCCGACAGCCGGTT
GCGCCTGTGCAAGAGCATGGCGATCGATTTCACAAGGCTGTCGCAAGGTT
TTGTAGACTATGTTTATTATATATGATAGGAAAGGCCGCGCCTTCTTCGG
CGATGTCCTCTATGATGTTGATGCGGTCGAGTTCACAAGGCTGCCGCAAA
TTCGGCTTTTTTTTTAGCAGTGCCATTATCTTCTTTGGGTGTCCTCGTTG
TCGGTGATGCGATCAACTCCACGAGGCTTGCGCACAGCGCGTGTTCTAAT
TAGGCCACCTCTTGCTTGCGATGTCATCTATAACGAAATGTAACACACGT
TTTTGCTACCGGCACCGGGCGACGTAACGGCCGTGGCGGAGCTAAGCGAA
GAGCAGCTCGCCGCCGTTCGAGACCAGGAAAAGGGGGAGGCGAATGTACA
GGTACCGTAGGTTGCGTGGCGTGAGATACCGCACCCTCTGGACTGGCGTT
CCCTTTTTTTTAAGACTGTATGCAGATTTGTGATTTCGTCTCTTTTGGTT
CGATGAGGCTCGCTGAGCTCTTCGAGTCGAAACACGTCAGCTGTGTGACC
TCTTTGAGCTTGGAAACAAACGTCACTGGTGGCAGCTGGCAGGTGATTCA
CACAAACACACGCTTCACCTTCACGCCTTTTATGACACTACACCACCACA
AGTACACTCTGATGACCCCGTTCCGGAGGCACACCTTGAAGGAAATGTTC
AAACGCATAAAACCAAACAAATACTCGAAGAGAGACTGCCCGGTCGAGAT
AAAACCACAGAGATCAAAGGGGGTGGTTTGAAGTATTTTGCAGTGACTGG
GAGAAAAACCGACTGGATACTGGGCTTACATTAAGCCTATTGTTAGCCTC
GCGCTGATTGTTTTGACAGTGATGCCAGCTGGTGCTAAGCGATCAGGCAT
ATTTTGTTCCGTTTTTTGCTCTTTTCCAGGTGACGGTTACAGATGAATTC
GGGAAAGAGCCTATCCGAGCGGAATTCGTGTGGGCCTGGGTCCCCAAGCG
ATGGAAAAAAAAATCAGTAGTAAAAAAGAGCCAGAGGAACGGTTGTGAAT
AGAAATATGTAGAACAGTCGGTGGAAACGGCCACGCTGTGGATACTGAGG
ATAGCGAGAATGGTATATGGAAACAGCAATGAGATTCGTTCTGGGCGTTG
CTTTGTTTGCCAGAGGGCGCCCGGGGGGTGGGGGGTGGGGTGGGGTGGGG
GGGTCCCCTTCCTCTGAGCCGCGTGAGGCAATTGTTTGCTGGAAGTTGGG
AACGTTCCTGAGACGGACGGCTTGGGCTTCTTGTCGTACAGAGTGTCGTT
GTTGTTGTTGTTGTTGTTGTCTTTTGGCCAAAAAAAGCCACTCAGGGCTT
ACCTCATGTCCGTGCCGACCGGGTGGTCCAACGTACGCGTGTAAAAGGTG
AAGAAACCGGTGATCGTTGTGGCATACCCTCGTGTTGCTCAAGTACCAGG
CTACCGCATGCAGTAGTAGCGCAAACCTTGCGCATATGGTTGTGTTGTTT
TGGAAGTCGGCTGGTAGGTACGAATCACGTGTAGAGGTGGACGCCAACGC
CGCGGCAGTTGTCATCGACGGCAAGCGTCTGGGGCACACGGGGCGCAACC
CTCGCTGCTACCGCCCTCGGCACCGTCCCTGCCTTCGCCTCCACTCCTCC
CTCTGCCCCCTTGTCTGCCTAGATCTACGAATTGGATACTGTCGT
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Coding sequence (CDS) from alignment at Scaffold_350:59907..63951-

>EsuBft1510_7a-0001 ID=EsuBft1510_7a-0001|Name=EsuBft1510_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=90bp|location=Sequence derived from alignment at Scaffold_350:59907..63951- (Ectocarpus subulatus male Bft15b)
ATGCCACAAAACCCTACACTTCTAGCGAGATCTGTGCACCACGCGGAACA
CATGTTTATAAATCGGCACAGCCCGCATGCAGTTGCATAA
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