Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft1510_9 |
| Protein domains | SignalP-TM |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 111 |
| Hectar predicted targeting category | mitochondrion |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1112bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTATCGGAGTCAAGTTCGAGATTGCCCAGAGCATATATTTGTGGTCGAT
GAGTCAAACTTCGGTTGTTCTCCCGCCGATTTTTCCTACACGACTTCGCT
TTGCTGTTTCATCCTGTCGCTACCCTGCCGATACATTCCGGCTCACTCTT
GTGGGCGAACTACTGTATTTGGAGCTGTATATCGAGGTGCAAGCCTTATC
AAGAGCTTGGTTTGACAATGGTTGGTCGTTTGAGAGAAAATCCAGCCAGG
ACCTAGTTGTCCGTCCCATTCTCTACCCATAACAAGGCCCCCGGGGGGCA
TGCACCAAGCTCACCGCCTTGACTGACTTCCCCGTGTGGTACATCTTTCG
TTACAAGAAATGTCACTTTTGCTGCACCATGCTCGCGCCAGGGTGTCGAT
CAAGCTCACCTCGGCAGCCCGCAGTAACGCGAGGACGCTAGCTGAAGTTG
CCAAGGCTTCGGCCGCGCCCGTACCGGTGGCGACGATTCTGCGGGGCCCC
TTGGTCGCGCACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGG
GAGCGACAAGGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATG
ACGACGATTTCGAGAGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAG
GCTGCAGTAGAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTG
CCTAGCGGAACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAA
TGCGGGATACCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATG
AACGCAGTCACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCAT
GTATACGGCGAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGG
CGGCGTTGACGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACG
CCTCAACGGCGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGC
CGCAACCCCCCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCA
CCACAGCAGGTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGG
TACACACACTAA back to topprotein sequence of EsuBft1510_9a-0001 >EsuBft1510_9 ID=EsuBft1510_9|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MSLLLHHARARVSIKLTSAARSNARTLAEVAKASAAPVPVATILRGPLVA
HRESGKRNGNSDHGSDKDDHSFLEDDFSFDDDDFESSSSSPTACPFKAAV
ETTELAQKARDELCLAELVTEKRKDMVDEKMRDTDVTWVQQLSVKAMNAV
TAASNMTSGAAAVMYTANRGDPRNQAMGSTAALTAAGTCSTSAPSSTPQR
RRWKRINRNANASAATPPTGTSQPGERGTTTTAGTGSDITPLWWNTWYTH back to topmRNA from alignment at Scaffold_350:50833..52319+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)
TTTATCGGAGTCAAGTTCGAGATTGCCCAGAGCATATATTTGTGGTCGAT
GAGTCAAACTTCGGTTGTTCTCCCGCCGATTTTTCCTACACGACTTCGCT
TTGCTGTTTCATCCTGTCGCTACCCTGCCGATACATTCCGGCTCACTCTT
GTGGGCGAACTACTGTATTTGGAGCTGTATATCGAGGTGCAAGCCTTATC
AAGAGCTTGGTTTGACAATGGTTGGTCGTTTGAGAGAAAATCCAGCCAGG
ACCTAGTTGTCCGTCCCATTCTCTACCCATAACAAGGCCCCCGGTATTGC
AACCACCCCAACCCTGACCTCCTTCAGAAACATAGGTGTCCCTCCCTTTC
TTAGCCCACAGCAAAGCTCCTATCTTTTGCAAAACTTTGAATAATGACGA
GAAATTGTCGACATGTGACGCACATTGACGCCAGCGATCCATGTTCCACA
TCTGCACGCACTGGTGCGGAACCATGATGGCGTACTGATGAGATGCCCAA
AACCTGCATCGCTGCTCTAGTTGCTTGCCATAGTGTCCACGAAACTGCGG
CGTGGGTGTTCGCGTCCATCAGTACTAACGCTCTCAATCGTTTGTCGTGT
TGTTCGTGCTGCTGCGAGACTTACCTACGGCCGTGAGAGATTCAAACAAC
AAATACGGGAATGTAAAGGGGGGCATGCACCAAGCTCACCGCCTTGACTG
ACTTCCCCGTGTGGTACATCTTTCGTTACAAGAAATGTCACTTTTGCTGC
ACCATGCTCGCGCCAGGGTGTCGATCAAGCTCACCTCGGCAGCCCGCAGT
AACGCGAGGACGCTAGCTGAAGTTGCCAAGGCTTCGGCCGCGCCCGTACC
GGTGGCGACGATTCTGCGGGGCCCCTTGGTCGCGCACCGGGAGAGCGGTA
AGCGCAACGGCAACAGCGACCACGGGAGCGACAAGGACGACCACAGCTTC
CTCGAGGACGACTTCAGCTTTGATGACGACGATTTCGAGAGCTCATCGAG
CTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTAGAAACAACAGAGCTTG
CTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGAACTCGTAACGGAGAAG
AGGAAGGATATGGTTGATGAGAAAATGCGGGATACCGATGTGACGTGGGT
CCAACAGCTTTCCGTCAAAGCCATGAACGCAGTCACTGCGGCATCGAACA
TGACTTCCGGTGCTGCTGCTGTCATGTATACGGCGAATCGCGGGGACCCC
AGAAACCAGGCGATGGGTTCAACGGCGGCGTTGACGGCGGCGGGAACGTG
CTCGACGTCGGCCCCTTCCAGTACGCCTCAACGGCGGAGATGGAAGCGCA
TCAACCGGAACGCCAATGCATCTGCCGCAACCCCCCCCACGGGAACTTCT
CAGCCAGGAGAGCGGGGGACCACCACCACAGCAGGTACTGGGTCAGATAT
CACTCCGTTATGGTGGAACACGTGGTACACACACTAA back to topCoding sequence (CDS) from alignment at Scaffold_350:50833..52319+ >EsuBft1510_9a-0001 ID=EsuBft1510_9a-0001|Name=EsuBft1510_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_350:50833..52319+ (Ectocarpus subulatus male Bft15b)
ATGTCACTTTTGCTGCACCATGCTCGCGCCAGGGTGTCGATCAAGCTCAC
CTCGGCAGCCCGCAGTAACGCGAGGACGCTAGCTGAAGTTGCCAAGGCTT
CGGCCGCGCCCGTACCGGTGGCGACGATTCTGCGGGGCCCCTTGGTCGCG
CACCGGGAGAGCGGTAAGCGCAACGGCAACAGCGACCACGGGAGCGACAA
GGACGACCACAGCTTCCTCGAGGACGACTTCAGCTTTGATGACGACGATT
TCGAGAGCTCATCGAGCTCACCCACGGCGTGCCCGTTCAAGGCTGCAGTA
GAAACAACAGAGCTTGCTCAGAAGGCCAGGGACGAGCTTTGCCTAGCGGA
ACTCGTAACGGAGAAGAGGAAGGATATGGTTGATGAGAAAATGCGGGATA
CCGATGTGACGTGGGTCCAACAGCTTTCCGTCAAAGCCATGAACGCAGTC
ACTGCGGCATCGAACATGACTTCCGGTGCTGCTGCTGTCATGTATACGGC
GAATCGCGGGGACCCCAGAAACCAGGCGATGGGTTCAACGGCGGCGTTGA
CGGCGGCGGGAACGTGCTCGACGTCGGCCCCTTCCAGTACGCCTCAACGG
CGGAGATGGAAGCGCATCAACCGGAACGCCAATGCATCTGCCGCAACCCC
CCCCACGGGAACTTCTCAGCCAGGAGAGCGGGGGACCACCACCACAGCAG
GTACTGGGTCAGATATCACTCCGTTATGGTGGAACACGTGGTACACACAC
TAA back to top
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