EsuBft1809_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1809_2a-0001
Unique NameEsuBft1809_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:37124..39673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000000226
ProteomeIdEsuBft1809_2
Protein domainsIPR012816
Protein domainsSSF143990
Protein domainsG3DSA
Protein domainsIPR000477
Protein domainsSSF56672
Protein domainsPTHR10178
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length996
Hectar predicted targeting categoryother localisation
Evalue6.79e-37
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48NVP@7711|Chordata,49IM1@7742|Vertebrata,4CIIU@8459|Testudines
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_2aEsuBft1809_2aEctocarpus subulatus male Bft15bgeneScaffold_350 37124..39673 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_2a-0001-exonEsuBft1809_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 37124..37833 -
EsuBft1809_2a-0001-exonagat-exon-98186Ectocarpus subulatus male Bft15bexonScaffold_350 39388..39673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_2a-0001-cdsEsuBft1809_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 37124..37833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_2a-0001EsuBft1809_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 37124..39673 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=996bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGGCTCACCCAGCAT
TCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGAACGG
ATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTGGATT
TGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCTGTAC
ACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACCAGAT
CGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCCACGC
AGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTGGTTC
GTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTACGTA
TCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTGCTCA
ACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACTGTCT
CCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTCACAT
CATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCGCTAA
CGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCTCGGT
GGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCCACCA
AGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA
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protein sequence of EsuBft1809_2a-0001

>EsuBft1809_2 ID=EsuBft1809_2|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=331bp
MASYDQIMATTDPKTHKFLGRNVRPFNYALRERRREEIVLMGSYAKFAQN
HDMNQHLLETGTRLLAEVSPFDRGCSIGMSAYFPEASDSSKWTVSGLTQH
SASPWVSPLVVIPKKNGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLY
TRKVFSIFDLSSAFHQIDCDEDTFPLTAFGAPTQLFEWLRMGANARPSWF
VKFINRVVHGLERVLTYLDDVICFDEEPLGHVLNMIEFFKRLRQYNLKLS
PGKVRVGATHANFLGHIISPAGVSPDGLKAGALTDMPPPPNVKQRWSLLG
GLSYQLLPEIPQESRHQGATSHRSCQTRCPH
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mRNA from alignment at Scaffold_350:37124..39673-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2550bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGTAAAACTTGTTGG
GAAAAGCTTTGATGGAAGTTCGACGCCTTTTGCGTGATCATCCCTTGTCT
GGCAAGATTGTCTCCGCTTCCAATCCTCCCACGCCCCCCATTTCGCAGCC
TCCTCTCCATGGACATCGACGCATCCATGAGGTTGCTACTGCTACAGGTT
CTTCGTCTCCGGGGGACCGGGGCGAAGATCCAGCTTGTCTCCGTTTGGAC
GCTCCACGGGACCATGCTCCTGGCGTTCATATGGTGGCATCGACCTCCGC
TTGTGCAGACCAAGCTCCTCTTCTGGAACATGGGTCCGATCTGGTTGGCG
GCACGCTCCCGTTGGACTCGGACTCATACACCACCCGGGTTCTGCTGCAT
GGAGGACCTACAGCCACTTCCCAACTCACGCGAGTGGCGCTGCTGGACTC
TGGGTCTCCGGCGTCCTTCGTGTCTGACTCCCTGGTCACCGCCATGATAG
ACGCTAGAGCTTTGACCGCTGGGAGAGTTCGTGTCTCACCCTTTCGTCGT
TGGAGTGGGTTTGGTGATGGACCCCCCCTTGTGACCACCAGGTCGGTTCA
TCTCACCGTCAACTTTCTTCACGGGGATCGCGCTATCGCTTCCTTGGCGG
TCTGGGCCTGTGTTGTTCCAGATGCAGCCATGGGGCACGCCGTGCTTCTG
TGTCGTGATAGCGGGATGCGGTTCAACTCTCGCGTGTTTACCACCCTTCC
TCACCCTGGACCGGATGGCCGGGTTATGGGCGAGCTCACGCCCTCTCCGC
GTTTTTCCGCTGGCGCTTGCGTTTATGCTACACACGACGACGTTACTGCC
TCCTCCTTTCACCTTAAATATGCAGGGACTTCGAGAATTTCATCGGGGCC
GGAGGCTGCACTCGTTGAGGTGGACCTCGTCCGTTCTTCTGCATGCCCGC
GTTGATCGGCGAATGTCTGGTGTCGTTTCGACCAGAAGTAGGTGCGCTAT
CGTCCCCCGACGCTTCGTTTCCAATGGCATCCAGCGTATTCCCCCTGCAG
GTTGTGCTGAGCTGGAGCCAGGAGACGCCATAGGAGTGTCTGCCGCGCCG
CTATTACGAGTACCGGTGGAAACCATGAAGGCGACACCATCTTCGATTCC
TACCGGTCCCACGGCCTCTACATCACCACCTCGGGTCAACGTCGTCTATC
CCAAGTCTGGGACTCGCCGCTCTCCGGACCCAGCTTGAGCCCCGCCTCCC
CCGAAGCCGCATCCGCAAGAACTGATGGACTGCTCTTCCGAGGCACAGCG
CTCCAGCTTTTCGCGCTTGTGGGCTAGGCTGCCAGCTCATATTCACGACA
TCGCTTTCGATTTACACAATACGGGATGGACGCCGGAGGCTATTTGTCGA
TTGGTTGACGCTCTTGTCGAGTATTCTGACGTATTCTCCACTTCGAAAAC
CGATTTTGGTTCCTGCACCATCATGCCGTTCACCCTTTCTGTCCCGGTAT
GGACGAAGCCGGTTGCATCACGCCCGTATCGCATCAACCCGTCAATGCAG
AAGATAGTGGATGCAGTTCTGGACCAATGCCTGGCGGCAGGGCTCACCCA
GCATTCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGA
ACGGATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTG
GATTTGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCT
GTACACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACC
AGATCGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCC
ACGCAGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTG
GTTCGTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTA
CGTATCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTG
CTCAACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACT
GTCTCCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTC
ACATCATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCG
CTAACGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCT
CGGTGGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCC
ACCAAGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA
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Coding sequence (CDS) from alignment at Scaffold_350:37124..39673-

>EsuBft1809_2a-0001 ID=EsuBft1809_2a-0001|Name=EsuBft1809_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=996bp|location=Sequence derived from alignment at Scaffold_350:37124..39673- (Ectocarpus subulatus male Bft15b)
ATGGCGTCGTATGACCAAATAATGGCCACAACAGATCCCAAGACACACAA
GTTTTTGGGTCGTAACGTGCGCCCTTTCAACTATGCTTTAAGGGAGCGTC
GTCGCGAAGAGATTGTGCTTATGGGGTCGTATGCCAAATTTGCTCAAAAC
CATGACATGAACCAACATCTACTGGAAACGGGTACCCGCCTCCTTGCGGA
AGTCAGCCCCTTCGATCGTGGTTGTAGTATCGGCATGTCTGCATACTTTC
CAGAGGCTAGCGATTCATCCAAGTGGACGGTTAGCGGGCTCACCCAGCAT
TCCGCTTCCCCGTGGGTTTCCCCTTTGGTTGTCATCCCAAAGAAGAACGG
ATCGGTTCGCATCACCGTCAACTACAAGCGTCTCAACGCCCTGGTGGATT
TGGATGGACAGCCTCTCCCTCGTGTGGACGGTATCCTGGATTCTCTGTAC
ACCAGGAAAGTGTTCTCCATCTTCGACCTCAGCTCGGCTTTCCACCAGAT
CGATTGTGACGAAGACACCTTCCCGCTCACCGCCTTTGGCGCTCCCACGC
AGCTGTTCGAATGGCTTCGTATGGGAGCCAACGCACGTCCGTCCTGGTTC
GTCAAGTTCATCAATCGAGTGGTGCACGGTCTGGAGCGCGTGCTTACGTA
TCTGGACGATGTCATCTGTTTCGATGAGGAACCTCTGGGACACGTGCTCA
ACATGATCGAATTCTTCAAACGGCTGCGACAGTACAACCTCAAACTGTCT
CCGGGGAAAGTTCGCGTCGGCGCCACACACGCCAACTTCCTCGGTCACAT
CATCTCCCCGGCCGGCGTTAGCCCTGATGGCCTCAAGGCTGGGGCGCTAA
CGGACATGCCGCCGCCGCCGAATGTCAAACAGCGTTGGAGCCTTCTCGGT
GGACTCAGTTATCAGTTACTACCGGAAATTCCTCAGGAATCTCGCCACCA
AGGTGCGACCTCTCACCGCTCTTGCCAAACAAGGTGTCCCCATTAA
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