EsuBft1809_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1809_4a-0001
Unique NameEsuBft1809_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:24268..24900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1809_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length63
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4aEsuBft1809_4aEctocarpus subulatus male Bft15bgeneScaffold_350 24268..24900 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4a-0001-exonEsuBft1809_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 24268..24900 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4a-0001-exonagat-three_prime_utr-6468Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 24268..24680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4a-0001-cdsEsuBft1809_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 24681..24839 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4a-0001-exonagat-five_prime_utr-4242Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 24840..24900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1809_4a-0001EsuBft1809_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 24681..24839 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1809_4a-0001 ID=EsuBft1809_4a-0001|Name=EsuBft1809_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=633bp|location=Sequence derived from alignment at Scaffold_350:24268..24900- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCAAAACTGAAAGCAGAAATATTTCGTTCCATCGGCAACCGCGGCCAGC
GTCTGCCTTCGATGCCCCATGATGGGGCTTTCTTGGACGAGGTGCAATCG
CCTACGCGTGTAAGGCCCCAAGGGCAGGCTAAGAGGCACACCTCTACGGC
GCAGAGAAACCGCCGTGGTGGAGAACAGCATGTAGTCCAAGGAGGTGCTA
CTGGCTCTTGGGGGGCCTAGCCTGTGTCGGTAGCCGTGATGGGGCTGCGT
TGGCGTTTCTGTTTCTGTTAACGTTGGAGTGTGATTTGTGTTGGCGGGGA
GAAACGTGAAGGCCGCAGCGAGCATTTTTTGTGGCAGAAGAGATTATTTC
GAAACTTCCGCGGGTAGTGGATGGGGGATACAGCGAATCAATTGGGGCGA
AAAAAGGAGATAGTAGAATCGTGGCGGGAACCGTGGCGGGAACCTTTCTT
TGAGTTATCACACTGCTGCATGTAGTTGCGTTTGACTTTGTGTGCATAGG
ACCGATGTCGATGAGCGAGTGTTGCCACCGTGTCTCGTACGATACGGTTT
GTCCGGCTTGGTGGTAGACAACACCGGATGGAAGGCAATGACAGGACAAG
ACCACAGATCATCTATCTGAGATATTTCCGATT
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protein sequence of EsuBft1809_4a-0001

>EsuBft1809_4 ID=EsuBft1809_4|Name=EsuBft1809_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MPHDGAFLDEVQSPTRVRPQGQAKRHTSTAQRNRRGGEQHVVQGGATGSW
GA
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mRNA from alignment at Scaffold_350:24268..24900-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1809_4a-0001 ID=EsuBft1809_4a-0001|Name=EsuBft1809_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=633bp|location=Sequence derived from alignment at Scaffold_350:24268..24900- (Ectocarpus subulatus male Bft15b)
TTCAAAACTGAAAGCAGAAATATTTCGTTCCATCGGCAACCGCGGCCAGC
GTCTGCCTTCGATGCCCCATGATGGGGCTTTCTTGGACGAGGTGCAATCG
CCTACGCGTGTAAGGCCCCAAGGGCAGGCTAAGAGGCACACCTCTACGGC
GCAGAGAAACCGCCGTGGTGGAGAACAGCATGTAGTCCAAGGAGGTGCTA
CTGGCTCTTGGGGGGCCTAGCCTGTGTCGGTAGCCGTGATGGGGCTGCGT
TGGCGTTTCTGTTTCTGTTAACGTTGGAGTGTGATTTGTGTTGGCGGGGA
GAAACGTGAAGGCCGCAGCGAGCATTTTTTGTGGCAGAAGAGATTATTTC
GAAACTTCCGCGGGTAGTGGATGGGGGATACAGCGAATCAATTGGGGCGA
AAAAAGGAGATAGTAGAATCGTGGCGGGAACCGTGGCGGGAACCTTTCTT
TGAGTTATCACACTGCTGCATGTAGTTGCGTTTGACTTTGTGTGCATAGG
ACCGATGTCGATGAGCGAGTGTTGCCACCGTGTCTCGTACGATACGGTTT
GTCCGGCTTGGTGGTAGACAACACCGGATGGAAGGCAATGACAGGACAAG
ACCACAGATCATCTATCTGAGATATTTCCGATT
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Coding sequence (CDS) from alignment at Scaffold_350:24268..24900-

>EsuBft1809_4a-0001 ID=EsuBft1809_4a-0001|Name=EsuBft1809_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_350:24268..24900- (Ectocarpus subulatus male Bft15b)
ATGCCCCATGATGGGGCTTTCTTGGACGAGGTGCAATCGCCTACGCGTGT
AAGGCCCCAAGGGCAGGCTAAGAGGCACACCTCTACGGCGCAGAGAAACC
GCCGTGGTGGAGAACAGCATGTAGTCCAAGGAGGTGCTACTGGCTCTTGG
GGGGCCTAG
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