EsuBft1809_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1809_5a	EsuBft1809_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 14534..16771 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1809_5a-0001-exon	EsuBft1809_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 14534..14617 +
EsuBft1809_5a-0001-exon	agat-exon-98187	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 14708..16771 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1809_5a-0001-cds	EsuBft1809_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 14534..14617 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1809_5a-0001-exon	agat-three_prime_utr-6469	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_350 14894..16771 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1809_5a-0001	EsuBft1809_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 14534..14893 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:14534..16771+
coding sequence from alignment at Scaffold_350:14534..16771+

spliced messenger RNA

>EsuBft1809_5a-0001 ID=EsuBft1809_5a-0001|Name=EsuBft1809_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2148bp|location=Sequence derived from alignment at Scaffold_350:14534..16771+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCTCCGGAGGAGCCCGATGATCTTCAGAGTTCAGCTGTGGTGAG
AAGCCGCAGCCGGAGCGTTGTGCGTGATCCCGTGGCTGCCATCGCTTCTG
CAGGCCAAGTCGGGTGGGCGAGGCCAGGATTAGTCGGGCCGTGCTGCGAG
AGGCACGGCAGGTGCGGCGGGATTTGTGTGTTCCACCGAGCAGCCACCAA
GTGCTGCGTGGTCGTCAGGGAGGGCGACACTGCGGGAGGAGAGAGCAGCA
GTAGGCCGGACGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNTGGGGTACCGCGTGCACTCTACATCATCAGCTGGC
GGGGCCCGGAAATACGTAGCTGTGGGATGGTGGAGTTCAAAGACACGAGA
AAGCCGTCGTGTGCCTGTCTGCTACACCGCTACACCGAGGAACGTCGGGA
CGCCGAGGGACGTCGGGTGTGGGCGGGTGGGGAGGGAAGCAAAACGGACC
AGCCGCGCGGTGGATTTCCGCGGGCACTATCTTCATTTTGGTTGGTACCG
GAATGTGTTTTATTTTGTTTTTTTCCTGATTCTTTTGTATGTGGCGTTTA
GCAGTAACGGGCGATAGCTTGTATTGCACGTGAATAGTCGCAAGTGAGGC
GCTGTTGCGGACTTGCATAGATCGCTGTTAATTGCTTGTTGAAATCCATG
GGTGTTTCCGCCGCCACATGCTCGAGTTTCACGCGTCACCGCTTGTTTTG
TGTTCCCTGTGTGGCCTGTGTGGTTGCAGATTAAGGGAAGGTGGCGCCGT
GCGTGGGTTTTATGTTTTGGAGAGTGTAATGCTCGGAGAGTTTTGCGCCC
GGCCGGTAGATATTCTGCAATGTGACAGAGTTATGGTCGTCCACTCAGGT
CGTCCACTCATGATTGAGGTGGAACTATTTCGGTCTTGCAGTTATTGGAT
GACGGAGGGCGTTGCCTCTTGGGTGTTGTTGGACTCTCTTTACGGGAGGA
GTTTGGTCATGTTTCCACGATGTTGCGTGAACCATGTGTCTGATTTGT

protein sequence of EsuBft1809_5a-0001

>EsuBft1809_5 ID=EsuBft1809_5|Name=EsuBft1809_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=90bp
MDPPEEPDDLQSSAVVRSRSRSVVRDPVAAIASAGQVGWARPGLVGPCCE
RHGRCGGICVFHRAATKCCVVVREGDTAGGESSSRPDVDX

mRNA from alignment at Scaffold_350:14534..16771+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1809_5a-0001 ID=EsuBft1809_5a-0001|Name=EsuBft1809_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2238bp|location=Sequence derived from alignment at Scaffold_350:14534..16771+ (Ectocarpus subulatus male Bft15b)
ATGGATCCTCCGGAGGAGCCCGATGATCTTCAGAGTTCAGCTGTGGTGAG
AAGCCGCAGCCGGAGCGTTGTGCGTGATCCCGTGGTAAGGACATTACTGA
GTGAAACGACGCGCAAGTTTTGACTAGGGTTTCGAGTTGAGGCGAGAACC
AGGGGTGTAGGAGATGATGGGCAGGCTGCCATCGCTTCTGCAGGCCAAGT
CGGGTGGGCGAGGCCAGGATTAGTCGGGCCGTGCTGCGAGAGGCACGGCA
GGTGCGGCGGGATTTGTGTGTTCCACCGAGCAGCCACCAAGTGCTGCGTG
GTCGTCAGGGAGGGCGACACTGCGGGAGGAGAGAGCAGCAGTAGGCCGGA
CGTGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNTGGGGTACCGCGTGCACTCTACATCATCAGCTGGCGGGGCCCGGA
AATACGTAGCTGTGGGATGGTGGAGTTCAAAGACACGAGAAAGCCGTCGT
GTGCCTGTCTGCTACACCGCTACACCGAGGAACGTCGGGACGCCGAGGGA
CGTCGGGTGTGGGCGGGTGGGGAGGGAAGCAAAACGGACCAGCCGCGCGG
TGGATTTCCGCGGGCACTATCTTCATTTTGGTTGGTACCGGAATGTGTTT
TATTTTGTTTTTTTCCTGATTCTTTTGTATGTGGCGTTTAGCAGTAACGG
GCGATAGCTTGTATTGCACGTGAATAGTCGCAAGTGAGGCGCTGTTGCGG
ACTTGCATAGATCGCTGTTAATTGCTTGTTGAAATCCATGGGTGTTTCCG
CCGCCACATGCTCGAGTTTCACGCGTCACCGCTTGTTTTGTGTTCCCTGT
GTGGCCTGTGTGGTTGCAGATTAAGGGAAGGTGGCGCCGTGCGTGGGTTT
TATGTTTTGGAGAGTGTAATGCTCGGAGAGTTTTGCGCCCGGCCGGTAGA
TATTCTGCAATGTGACAGAGTTATGGTCGTCCACTCAGGTCGTCCACTCA
TGATTGAGGTGGAACTATTTCGGTCTTGCAGTTATTGGATGACGGAGGGC
GTTGCCTCTTGGGTGTTGTTGGACTCTCTTTACGGGAGGAGTTTGGTCAT
GTTTCCACGATGTTGCGTGAACCATGTGTCTGATTTGT

Coding sequence (CDS) from alignment at Scaffold_350:14534..16771+

>EsuBft1809_5a-0001 ID=EsuBft1809_5a-0001|Name=EsuBft1809_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_350:14534..16771+ (Ectocarpus subulatus male Bft15b)
ATGGATCCTCCGGAGGAGCCCGATGATCTTCAGAGTTCAGCTGTGGTGAG
AAGCCGCAGCCGGAGCGTTGTGCGTGATCCCGTGGCTGCCATCGCTTCTG
CAGGCCAAGTCGGGTGGGCGAGGCCAGGATTAGTCGGGCCGTGCTGCGAG
AGGCACGGCAGGTGCGGCGGGATTTGTGTGTTCCACCGAGCAGCCACCAA
GTGCTGCGTGGTCGTCAGGGAGGGCGACACTGCGGGAGGAGAGAGCAGCA
GTAGGCCGGACGTGGATNNN