EsuBft981_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft981_4a-0001
Unique Name	EsuBft981_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:362232..365885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft981_4
Protein domains	IPR024630
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	299
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Stc1 domain
Ec32 ortholog	Ec-18_000880.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a	EsuBft981_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 362232..365885 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a-0001-exon	agat-exon-78757	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 362232..362400 +
EsuBft981_4a-0001-exon	EsuBft981_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 363064..365885 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a-0001-exon	agat-five_prime_utr-15472	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 362232..362394 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a-0001-cds	EsuBft981_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 362395..362400 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a-0001-exon	agat-three_prime_utr-23761	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 363481..365885 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_4a-0001	EsuBft981_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 362395..363480 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:362232..365885+
coding sequence from alignment at Scaffold_347:362232..365885+

spliced messenger RNA

>EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2991bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAACACCATCCGCTAGATTCCTGCGCCCGCGGCCATCGTCTCAAGCCCC
CGCATCGTCAACGCTTCCGTGAGCCTCCCCCTGGAGATAGGGCTTGTTCA
CCGCACTAGAGCTGCAGCACCCGTGGAAGTAGCATCAGCAGCGCTAGCAC
GCGAGGGGCAAACATGCAGGGCGCATCGGCGAGTGGCGCCATCACGTGTA
CCGTCTGCGGGGAGCGAAAGCCTGCCTCGGAGTACTCTCGCAACCAGCTG
GCCAGGTCCGCAAGGGAGGTGTGCCAGGTGTGCCTCATGAGTGAGGGAAC
GGTCGCGGCGCCCCCTTCTCGGGTGGCGCCCGCCGCGGGCGAGGGCGTAG
TCCGCTGCGTTGCTTGCTGCCAAGTGAAAACTACCTCGTCGTTCGGCATC
AATCAACTCCGCCGCCGCGCCGGCATCGAGCGCTGCATGCTCTGCGTGGA
GAAGGACCTGGGGTCGGTGGTGCTCTGCCACGCTTGCAACACGCACAAGC
CCTTCACGGACTTCAGCAAGAAGCAGCTGGCGTGCAAGCCCGGCTCGGAG
AGGTGCAAGGTTTGCATCGAGAATGCGTCTCGGTGATGGGACTGCGGCGG
TCGGCGGCGGGAGTGCCGAAAGGCCCGAGAGAGAAGAGAGGGGGGGGCTC
CAGTGAATCGAAGGGTACGCCGGTGAGCGAGAACGTTGGCGGAAAAAGGC
GTTCGTAGCCGTGAGCGACTCTACCCCTCGACTGCACTGACAGAGGAGGC
TGTGAAGCCGAACTACTCTATCTAGACCTTTTGATCCCTTGGAGGGGGGG
AAGACTTTGGATCGAATGGAGTGTGAGAGGAAGTACGGCAACATGGAATG
CATGGTTGCGCCGAACCCTTCGTACTGCCGCCGTTCATACGTTCTTGTGC
CCTTCTGTGCGTCGTTTGGCCCCCATCTTCGTCGTGGAAAATGGGAAAGA
GAACGAGAGAGGGAGGGAGGGAGGGATGCCACACGATTGCGAAGACAGAC
AAGGAGAATAGATGAGAGAAAGACGGGTGGAGGAGATACAGAGACAAAGA
AGGAGTGAGGGGGGGAGAAAGAGGCGGGTAGGGGCAGAGACAGAGAATAA
GGCATAGCGAGAGAGAGAGAGGCAAACAAAAATGAAACGGACAGACCGGG
GTTGGATGGTGGAGCTTCACCCGAAGTTTCCATTGCCAAATTTCAGATAC
AACAATTACTGACGAGCTTTTGATTTACATAATTTGGTACATATTATTCT
GTTGGAGCCTCGTCGCAGGATGGTTGGGACGGGGGGCAGCATCAAAAGTA
CTGATTTTTACCATTCGTTCGGTAGGCGGGAGGCTGGGACGTGTCTAGGG
TGTCCAGCGAAAATACCCAAATGCTTCTCATTTTGTTTTCGTATCAAAGT
TCTAGATGCGTTGTTCCGAAAGACATGTGCGTGGAGTAGTACGACGTTGG
ATGTTGGACATATTGTGTGTTTCGGGTTCTGAGCAAATGTAGACTACTCC
AAGTAGAGAGAAGCTTTTGTTTTTCGTGTGTCGCGCCTATCGACGAAAGG
ATTGGGCCAGTCCGCGTCAAGATTTCAACAGCGAATATTTGCGCGGCTGG
ATGGAGGGAGTGCGATTGGCTCTGTGGTTGTGCTGATGTATAGGGTGAGT
GATAAACATGCCAGCGTGTACGGCGTGTGTCCCACTTGTTGTTCCACGAA
TTGCGTTTTCATATCGGCGGGGTGTTGGTCGTGGTTGTGGTTAAAGTCAG
CTCAGCAAATATTTTTACGCCGTCGGCTGTCGGCACCCATGTGGCATTAC
GTGTTTAGCCGAGTTTGTGGCGCTTGAGGCACATGGGGGGGGGGGTGGCG
GACAGCAGTGGAGGATTATCGATTGAGGGGGGGGGAGGCGTGTCAAGCGT
GGCGCATCTATCCTAGAGAAGATAGAGGGGCTCCCATTGGTCAGCATTCA
TGCATGACCCAACGGAGGAACATTGCTCTGGGCTGGTCGGTGCATCAGTT
CGAACCGTGGTCGCTGTACACGAATTGCGGTGGTAATGATTTGTCTCCAG
TTTTAGGTGATTGCGTTTTTCTTCATAGCTTTACGTCAGAAACAATTTTC
AGCGAGGGGGGGCGGGCGATAGGAGCTGCGCCAGAGGCGAGTCGATTGCG
GTGACGCCGTCCACGGAACTTTCCATGGAACATTCCTGTGGAACATGCCT
AACCCGTAGGAGCGGCAGTGGTGAGGTGGGGGCGGGGACTGTGCATGGTG
AAAGCAAGGGGATGGCAGGCAATTGCCATTTTCGTCGTAGAGCCACGTGC
GAAAATTTCTGTGCATGGTCGACGTTTCCCGTGTGGAAAAGGGGCGGGTC
CGTCAATATTTTACGGTTGACTTCCCCATTTTTTGTATAGAATGGAAGAT
GTGTGTGGGCCTCAGGTGTCCCCCGCTTGGCGTTTGGGTTCGATTGTTTG
GTCGATATTTACACAGGACGCCTTGTGCAAGGGAGGAGGGGCTTTTCGGT
GATGAGGGGGTTGGCATGGTGGGGGTGGTAGGGTCCTTATCACCTTTGAG
GCGAGGTGGGTGTGCTGCTGTGTGTTGGGTGTTTGATCGTGAGAGTAGCC
AGCGGTTCCGTTTTTGTTGATCGAAAGCAGGACACGGGCGGGTGTGTGCC
GACACGCGTCGGGTCTGGTTTGTGTAAAAGTTGCACCCAGGGAACGCCTT
GTGCAGGGGCTGGAGGGTAATCGGGTGGGGGTTTAGCCTTGATCGATGTC
TTCATGTCGAGTGGTGCCAGTGGTGTGGAGTGGGCGTGTTTCCTTGTGGG
GGAGGGTGGTTGGGTGGCATTTTCGAGTGGAAGTTAAACATCAACAAATT
CATGCATTGTTGGACGCGCATGGAAGGAAGACGTATATTATCTAAATACA
TGAAAGTCGTATATTTACCTTGTTACATGAAAGTGTCGCAGTTTCACGTC
TCTTAAGCCAAGGACGGAAGGCTGCTCGCGTTTTCAGCGCT

protein sequence of EsuBft981_4a-0001

>EsuBft981_4 ID=EsuBft981_4|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MQGASASGAITCTVCGERKPASEYSRNQLARSAREVCQVCLMSEGTVAAP
PSRVAPAAGEGVVRCVACCQVKTTSSFGINQLRRRAGIERCMLCVEKDLG
SVVLCHACNTHKPFTDFSKKQLACKPGSERCKVCIENASR

mRNA from alignment at Scaffold_347:362232..365885+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3654bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)
GCAACACCATCCGCTAGATTCCTGCGCCCGCGGCCATCGTCTCAAGCCCC
CGCATCGTCAACGCTTCCGTGAGCCTCCCCCTGGAGATAGGGCTTGTTCA
CCGCACTAGAGCTGCAGCACCCGTGGAAGTAGCATCAGCAGCGCTAGCAC
GCGAGGGGCAAACATGCAGGTGAGAAAGTAGGCTTCCCTTTTTTCAGAGA
AAATCATCCTACTCGCCTATGTCGGTCAGACCGTCGGACGAGCCTAGAGG
TTACTTTGATACCGATATTTTTTTCAATACGACACAGGGTGATTTTTTCC
CAATGTAGGCGACCAGACCAGACCGGCCGAGCTTTGACTCGCCTGCCCTA
TACTACAATCATGGCTGGTGCCCGGCACATAACCATACCTTTTTGTAATT
TGATGTTTTAAGTGTGCGCCGAGGGCTAACTGAAGAACGTCGCCCTCATC
GAATCCAAGTGTTTGGCGGACGCAAATGAACTTATTGCTCGGCTTGTTCT
CCCCCTCTCCCAGGTATGGCATTAAACGCACTTTTCTGGTGAAACAATTC
CCTTCCCATCCTCACGCCCCCAGCCGTCGCGGAGAGCACGGTGCTGAAGT
CGGCATCCCCAAATCCCGACGAAACAAAACGTAACATTTTTACGTACACG
TACGACGCCCGCTCTTCCTTAGTCTAGAACCATTGTAGGCATATTTAACC
TCCTTATCGGTACAATACCCCTTGTCAGTATTTCCCCCCGCTGCTCCGCA
GCCGTGTGTTTACAAGATCGTACATCAATACATCCAACCAATCTCCTCGG
TTATTTTGTTCGCCCACACGCACGCACGACAGGGCGCATCGGCGAGTGGC
GCCATCACGTGTACCGTCTGCGGGGAGCGAAAGCCTGCCTCGGAGTACTC
TCGCAACCAGCTGGCCAGGTCCGCAAGGGAGGTGTGCCAGGTGTGCCTCA
TGAGTGAGGGAACGGTCGCGGCGCCCCCTTCTCGGGTGGCGCCCGCCGCG
GGCGAGGGCGTAGTCCGCTGCGTTGCTTGCTGCCAAGTGAAAACTACCTC
GTCGTTCGGCATCAATCAACTCCGCCGCCGCGCCGGCATCGAGCGCTGCA
TGCTCTGCGTGGAGAAGGACCTGGGGTCGGTGGTGCTCTGCCACGCTTGC
AACACGCACAAGCCCTTCACGGACTTCAGCAAGAAGCAGCTGGCGTGCAA
GCCCGGCTCGGAGAGGTGCAAGGTTTGCATCGAGAATGCGTCTCGGTGAT
GGGACTGCGGCGGTCGGCGGCGGGAGTGCCGAAAGGCCCGAGAGAGAAGA
GAGGGGGGGGCTCCAGTGAATCGAAGGGTACGCCGGTGAGCGAGAACGTT
GGCGGAAAAAGGCGTTCGTAGCCGTGAGCGACTCTACCCCTCGACTGCAC
TGACAGAGGAGGCTGTGAAGCCGAACTACTCTATCTAGACCTTTTGATCC
CTTGGAGGGGGGGAAGACTTTGGATCGAATGGAGTGTGAGAGGAAGTACG
GCAACATGGAATGCATGGTTGCGCCGAACCCTTCGTACTGCCGCCGTTCA
TACGTTCTTGTGCCCTTCTGTGCGTCGTTTGGCCCCCATCTTCGTCGTGG
AAAATGGGAAAGAGAACGAGAGAGGGAGGGAGGGAGGGATGCCACACGAT
TGCGAAGACAGACAAGGAGAATAGATGAGAGAAAGACGGGTGGAGGAGAT
ACAGAGACAAAGAAGGAGTGAGGGGGGGAGAAAGAGGCGGGTAGGGGCAG
AGACAGAGAATAAGGCATAGCGAGAGAGAGAGAGGCAAACAAAAATGAAA
CGGACAGACCGGGGTTGGATGGTGGAGCTTCACCCGAAGTTTCCATTGCC
AAATTTCAGATACAACAATTACTGACGAGCTTTTGATTTACATAATTTGG
TACATATTATTCTGTTGGAGCCTCGTCGCAGGATGGTTGGGACGGGGGGC
AGCATCAAAAGTACTGATTTTTACCATTCGTTCGGTAGGCGGGAGGCTGG
GACGTGTCTAGGGTGTCCAGCGAAAATACCCAAATGCTTCTCATTTTGTT
TTCGTATCAAAGTTCTAGATGCGTTGTTCCGAAAGACATGTGCGTGGAGT
AGTACGACGTTGGATGTTGGACATATTGTGTGTTTCGGGTTCTGAGCAAA
TGTAGACTACTCCAAGTAGAGAGAAGCTTTTGTTTTTCGTGTGTCGCGCC
TATCGACGAAAGGATTGGGCCAGTCCGCGTCAAGATTTCAACAGCGAATA
TTTGCGCGGCTGGATGGAGGGAGTGCGATTGGCTCTGTGGTTGTGCTGAT
GTATAGGGTGAGTGATAAACATGCCAGCGTGTACGGCGTGTGTCCCACTT
GTTGTTCCACGAATTGCGTTTTCATATCGGCGGGGTGTTGGTCGTGGTTG
TGGTTAAAGTCAGCTCAGCAAATATTTTTACGCCGTCGGCTGTCGGCACC
CATGTGGCATTACGTGTTTAGCCGAGTTTGTGGCGCTTGAGGCACATGGG
GGGGGGGGTGGCGGACAGCAGTGGAGGATTATCGATTGAGGGGGGGGGAG
GCGTGTCAAGCGTGGCGCATCTATCCTAGAGAAGATAGAGGGGCTCCCAT
TGGTCAGCATTCATGCATGACCCAACGGAGGAACATTGCTCTGGGCTGGT
CGGTGCATCAGTTCGAACCGTGGTCGCTGTACACGAATTGCGGTGGTAAT
GATTTGTCTCCAGTTTTAGGTGATTGCGTTTTTCTTCATAGCTTTACGTC
AGAAACAATTTTCAGCGAGGGGGGGCGGGCGATAGGAGCTGCGCCAGAGG
CGAGTCGATTGCGGTGACGCCGTCCACGGAACTTTCCATGGAACATTCCT
GTGGAACATGCCTAACCCGTAGGAGCGGCAGTGGTGAGGTGGGGGCGGGG
ACTGTGCATGGTGAAAGCAAGGGGATGGCAGGCAATTGCCATTTTCGTCG
TAGAGCCACGTGCGAAAATTTCTGTGCATGGTCGACGTTTCCCGTGTGGA
AAAGGGGCGGGTCCGTCAATATTTTACGGTTGACTTCCCCATTTTTTGTA
TAGAATGGAAGATGTGTGTGGGCCTCAGGTGTCCCCCGCTTGGCGTTTGG
GTTCGATTGTTTGGTCGATATTTACACAGGACGCCTTGTGCAAGGGAGGA
GGGGCTTTTCGGTGATGAGGGGGTTGGCATGGTGGGGGTGGTAGGGTCCT
TATCACCTTTGAGGCGAGGTGGGTGTGCTGCTGTGTGTTGGGTGTTTGAT
CGTGAGAGTAGCCAGCGGTTCCGTTTTTGTTGATCGAAAGCAGGACACGG
GCGGGTGTGTGCCGACACGCGTCGGGTCTGGTTTGTGTAAAAGTTGCACC
CAGGGAACGCCTTGTGCAGGGGCTGGAGGGTAATCGGGTGGGGGTTTAGC
CTTGATCGATGTCTTCATGTCGAGTGGTGCCAGTGGTGTGGAGTGGGCGT
GTTTCCTTGTGGGGGAGGGTGGTTGGGTGGCATTTTCGAGTGGAAGTTAA
ACATCAACAAATTCATGCATTGTTGGACGCGCATGGAAGGAAGACGTATA
TTATCTAAATACATGAAAGTCGTATATTTACCTTGTTACATGAAAGTGTC
GCAGTTTCACGTCTCTTAAGCCAAGGACGGAAGGCTGCTCGCGTTTTCAG
CGCT

Coding sequence (CDS) from alignment at Scaffold_347:362232..365885+

>EsuBft981_4a-0001 ID=EsuBft981_4a-0001|Name=EsuBft981_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_347:362232..365885+ (Ectocarpus subulatus male Bft15b)
ATGCAGGGCGCATCGGCGAGTGGCGCCATCACGTGTACCGTCTGCGGGGA
GCGAAAGCCTGCCTCGGAGTACTCTCGCAACCAGCTGGCCAGGTCCGCAA
GGGAGGTGTGCCAGGTGTGCCTCATGAGTGAGGGAACGGTCGCGGCGCCC
CCTTCTCGGGTGGCGCCCGCCGCGGGCGAGGGCGTAGTCCGCTGCGTTGC
TTGCTGCCAAGTGAAAACTACCTCGTCGTTCGGCATCAATCAACTCCGCC
GCCGCGCCGGCATCGAGCGCTGCATGCTCTGCGTGGAGAAGGACCTGGGG
TCGGTGGTGCTCTGCCACGCTTGCAACACGCACAAGCCCTTCACGGACTT
CAGCAAGAAGCAGCTGGCGTGCAAGCCCGGCTCGGAGAGGTGCAAGGTTT
GCATCGAGAATGCGTCTCGGTGA