EsuBft981_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft981_9a-0001
Unique Name	EsuBft981_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:317458..323255 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft981_9
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	154
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-18_000840.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a	EsuBft981_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 317458..323255 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a-0001	EsuBft981_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 317562..322594 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a-0001-exon	EsuBft981_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 317458..317729 +
EsuBft981_9a-0001-exon	agat-exon-78772	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 319390..319518 +
EsuBft981_9a-0001-exon	agat-exon-78774	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 320625..320732 +
EsuBft981_9a-0001-exon	agat-exon-78771	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 321039..321117 +
EsuBft981_9a-0001-exon	agat-exon-78773	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 321670..321793 +
EsuBft981_9a-0001-exon	agat-exon-78770	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 322426..323255 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a-0001-exon	agat-five_prime_utr-15479	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 317458..317561 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a-0001-cds	EsuBft981_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 317562..317729 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_9a-0001-exon	agat-three_prime_utr-23765	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 322595..323255 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:317458..323255+
coding sequence from alignment at Scaffold_347:317458..323255+

spliced messenger RNA

>EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1542bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCTCTTGCAGAGTTGCGAATCTGTCGATCAACCGACGGAGCAGCGAGC
AGCGGAGTAGTCGCTGCTGCTGCTTTGTTCTGCGCAGCTGCCAAAACGCA
CGATATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGA
TAACTTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGG
GGAGAAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGG
AAGCACTCAAGAAGAGTACGAGGTGCGGGAATCGGATCCTATTACGGCTC
ACTTCATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAACAAGTCGGGT
TACGCCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATAGAGACAAAGA
GTACGGCGAGGGGCCGGAGAGAACGGCGTGGTTTCCCATGGTGGTTTTCT
TAGACGTTTTCGAAGAGGGGTCGGGGGACAACGGCGAAGACATGACGGCG
CGGTACGAGGTGGCGTTGGATTTCCACCCGAAGACAATCGCCGCTCCGGG
GCTAGTGGTCCTCGCGGCGTGGAAGATCAACACGGACGGGGGCGTGGCGG
CTAAACTCGATGTTCTCCCGGCGGAGGAAAAGGGGTTCCTGGAGAAAAAC
AGGCCGGGGATCACCATGATGTTCGGCGTTATCATCGCGTCCGGAATCGT
CAAGTTCCTCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTAAGGCAG
ACAGGCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCAGAGCCG
TCGGTAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAAGAAAAA
GGAAGGCGGCAATAACGTCAAGCAAGACTGATCTGCCCAGTGTGTTCATA
AGTAGTCTTGTCGGGGAAACACCAACGATCTCGTAGGTACCAGCGTCATG
TAGGTGTACGTGTACCTGTACCTTTTGTGTTCTTCTTGACATGTCATCGG
CCGCGCTAACCGGCTGACCAGTGAAAAGTGTTTTGCGGGGTAAAACAAGC
GAAAAAAATGTTTTTGTTCCCTGACGGGGGAACGCGGGACGCGCGGAGGA
GATTGGACGATAGGGCATGTGTGCGCCCCGCGTGTCTCAAATATGCATAG
GATTAGTATTTCACAATCTTTGACGTATGTTGTTTTACTATTTACCGGCA
ACGTAGGGTACGTCGGTTGAGAAATGATATGTTTGTGGATTCATGTCTCA
GTCCTTCCTCAAACATTTGCGAGCCAAGTCACCGGAGGTGTAAAAAAATT
GGAGTGTGTAGTGGCGAGCAGAAACAACGTTGTTCTTTGCCCTCCTCGCC
TATGTCGCGCGAGTTGAAAAAATCAGAGGCGTGTGTGATCACGAGCAGAC
AGAACTCGGTTCCGGCTGTTGTCGCTGCTTCCTCTAGTGTGTGCGGTCGT
CCCCATCTATTCTGGCGCCAGTCTGCGCAACTTTCGGTGTACCAGGCACA
AGCGTCGACAAAAATTCCGGTGTCACATAGGAAAAAGGTCAT

protein sequence of EsuBft981_9a-0001

>EsuBft981_9 ID=EsuBft981_9|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MAPTGRWNRMWFVLVITFVTLLSSHADAARLGGEGVALTRSGDVLSADGS
TQEEYEVRESDPITAHFISLGSAAQKLLNKSGYAFGSLVRISHSDRDKEY
GEGPERTAWFPMVVFLDVFEEGSGDNGEDMTARYEVALDFHPKTIAAPGL
VVLAAWKINTDGGVAAKLDVLPAEEKGFLEKNRPGITMMFGVIIASGIVK
FLRRGLERLVKKAKADRQEGTATAAPATEAEPSVAAARGKGAENPKKKKE
GGNNVKQD

mRNA from alignment at Scaffold_347:317458..323255+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5798bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)
CCCCTCTTGCAGAGTTGCGAATCTGTCGATCAACCGACGGAGCAGCGAGC
AGCGGAGTAGTCGCTGCTGCTGCTTTGTTCTGCGCAGCTGCCAAAACGCA
CGATATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGA
TAACTTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGG
GGAGAAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGG
AAGCACTCAAGAAGAGTACGAGGTACAGCAGCATCACACTACAGCAGTAG
TGCGCCACAACTGTAGCGTAGGGTACATGGCGAAGTGTAGAGTCTGATCT
TCCCAGGTCGGCGTCTCCCTCCTCGCTGATGTTGTGGGGTTCATTGGTTT
TGCTGAGGCACACACTCTCTCCGTGATCTCAACTCAGTCATGGACCTGTC
GAGCCTGTCTGCCGAAAAGGTTCGAGGAACGAGATGCGTTCCAGCAGCAG
ACATGATGATGTTCTTCGTTTAGGAACAATTTTGAAAACGCCCAATTGAA
TACGTCAGTCCCTCCAAGCGTTCACTGGAAGCCGCCATCCAAGCCTTTTC
GCTTCCAAGCAGTACCGGTGTGCGAGTGGAATGTGGCACCCTGTGTCCGT
GGAAATCGCCGGCAAAGAAGACAAAAGAGTAGTCTATATTGTTCGAATCG
GCAAATAGGTCGACGGCGCTGCACCAGCATCAGTTTCACACCGCCTTCTT
CCGCACAGGTCGTTGTGCGGAAGTCTATCGACGCGTATGCGTATCAACAC
CGCCATTAGGCGCGACGGCGCGGGTGTTCGTTCCCGTGAGAAAGGAAGAC
CTTCCCAACCCCACGAGCATACTAGCATAGCTCTTTACCCACAAGGAGAC
GCTGCTTTCTGGTGCCTCCTGCATACATTGGGGGCCTCTGCCCGGGTGCT
CGTTTCCGAACCACACCGCCGCCGTTCGAAGGGTTTTGGTGTTGTCCCTG
CGTAACGGGGATGCCCCTTGGCGTGCATGTGTGTGCATTTGTCGGTGTGG
TGTATTTACGGCTGTCACGAGTTTTTTCCAGGCCTTGTCCCTTTGGTAGA
CCGTTGTTCAACGACTTGGAACACCCCACAAAGGCCCGCGCGTTGACTGC
TGCATACCGCATCACAAGTGTTGCTTTACTTGTAAACATGGAGGCCCTAC
AAACAAGTCCAGCAGTAGTTGGGGGCGGCTTTCAGAGACTTCAGTTTCAG
GTCAAGTCCCCGTCCGCGTGAAAATCGCATCCGCCACCGTGGATCATGGG
CTACTGCTGTACGGGGCGCAGCATGGCATCCACCGCTGAGGTGTGCACGT
TCGGTATTTTCTTTTGTTTCCTACGAATCCGAACCAATTTTCGGCACGGA
AGCCTCTTTTGGACCCACACGCAGCTTTGCGCCCCCGACTGCACACCAGT
TTTGTAAGCCCGCCCCCCCCAGATTCCCTCGAGGTGGTTACACATAACTG
CCTCTGGAAGTGAAAGCGAAAGAAAATAGAAATAAGTCATTCGCAGCAGT
CATTCGTATGCAAGGATTTTGCACAGGATGCCAAACACCCTTCGCAAGAT
GCAGCGCACCCTCGATGAGCCTCGCCGAATATCTCACGGCGCTTCGCGCT
TGGTGATGTGAGAGGCTGGTCCCGTGAGAACCCGGCGTACTCCATCCCGG
CGTTGTAGGTATGCGAGGTAACTGGTCTAACGACTACGGCATGCGCGACT
ATGAGTACACCCCCCCCGGATTCCCGTTGTGCTCCGATAGGGATGCGAAG
TCAATGGCCTGACGACAACGGCATGCACGGCTATGAGCAAAACACACACA
CACACACACACATACGATTCCCTCGAAACTGCCGGTGTTCCTTGTCTGTT
CTACGGTTACTGTGTGTTTTTTTCTTGGACAGGTGCGGGAATCGGATCCT
ATTACGGCTCACTTCATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAA
CAAGTCGGGTTACGCCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATA
GAGACAAAGAGGTGAAAGGTCCTATGAATTCGGCGTACGCTGTGCCTCTG
TGCACGTGAAACGGTTTCGTATTGGACCCACACGGCACGTTGGCCGCAGC
TATTGGCGCGGGTGGGAAAATGTGAGTTGCATACGACGCCACACACCTCT
ATTGGAAAAAGAGTGACCATGCCGAAATAGGCGGCGTTGGAACCGTGTCG
TCGAGGGCGATCCATCAACCTACCATGTGGTTTTGGCGTCCCCTTCGTCG
TGGAACAACCGTGCTTTCGCGGTATGTTGTGCACCCGACGGTATTTACTT
ATCCACCACTCGCACAACTCCCCCGCTCGATTCACTCTCACAGTCGGGGG
TTTTTTTCTTCTTTTTTTTCAGTTGCCATGATGACATGTGTTTGATGCTC
AAGGTCGCACTAGTTGTTTAGCCGGGAGGGTACTGGCACACAAACGAGGG
GATGACAAATGTAGCCCGTGGGACTGCTTGCTCACTTTAACTGGACTGCG
TGTTGAGCCCGCGGCGCGGGGGGAGAGGGACAGCGAGTGTGGATAAATTG
AACGAGGATCGGCTATCGCTCGAAGGTGATTCGCTCTCGGACAGCACACG
CGAAAGAACGCATCAGGACGCGGTACTCGTGCTTTGCTGGCACGGGAGGC
ACGGGGGCCATTGGGATCGCGTACAAGGGAAACCCTTGCCGCCAGGAGAC
AGCTGCATTGGTGTTGCATTGCGTCGACGGCGGCCTACGTTACGGTATCC
TTCGAGACGACCGTCGATTGAAAGCAAAGAGAAAGCTCGCCGCAGCGACG
GTTGCTGTTATCATATCTACTGCAGTCACGACTGGGCAACGGCCGTCAGC
AGCAATTGGCGGTCGTTCCTGAAACCCTGCTCTCCTCATCTCTCGCTTTT
TGCTTGTTAACGGTGCTTGTTAATATATCTAGACATTGTCTGGTCCATTG
TGTCTTCTCAAGAACGGTCCTATTCTGATCACTGCTTGAATCCAAATCTG
ATAGCCGCTCGTTTTCTTTCCTTCTGGGTGTCGGCCGTCTCCACGCAACA
TCAACGACAACAACAACAACAACAACGACGACGACGACGACGACGACGAC
GACGACGACGACAACAGTACGGCGAGGGGCCGGAGAGAACGGCGTGGTTT
CCCATGGTGGTTTTCTTAGACGTTTTCGAAGAGGGGTCGGGGGACAACGG
CGAAGACATGACGGCGCGGTACGAGGTAAGCCGTAGGCACAGCTGCGCAG
GCTTCCGCTGACGCTATCTGGCGTGTTTTACACGTTATGTTCCTACTGGC
CGTCTTCGGTTGTGCTTCAGTCACCATCGAGCCCCCCCCCACCCCATCTA
TCCCTCTGGTTTACGAGTCGAACTCTTGAATTTTTTTCTGTTGGGGTACA
TATATGTAGTTGGCCTGTGACCATGGAAGATGTCCGCGTCGGAACGTGGT
ACTGAGCAGAGACCGAAAAGGTTTAATTTTGAAGGGAAACAACAAGAATA
ACAAGAGCAACGACACAATTGTGACCCGCAGGTGGCGTTGGATTTCCACC
CGAAGACAATCGCCGCTCCGGGGCTAGTGGTCCTCGCGGCGTGGAAGATC
AACACGGACGGTGAGATACACCTCCTCGGCGAGACGTCGGCAAGCTCGAA
ATGCTCGGTAACTTTGTGGTCCTCGAGAAACTCCGAGGTCTTTCGGTTGT
TCAGGTACTCGACCGTACGAGGGATGATACGCTAACGTGAGCGCTTTCTT
CCGGGGTCGGTGGCCCTTTTTCAGTTTTGTTGTTTTTTGCTGCCGCTGCT
GATGTAATCGAGGCGAAGCTTGTCCATCCTGTTTTTTTCCGAAGGAGGAC
GCAGGATCAGAATGAATAGACAGAGGCCGTGTAGAACCAAAGCCAGCGGT
TGTTACTCTACGTTCAGCGGGTCCGTGAAGCAACAACTGCAGAGGGCCCT
GGCGACATCTGAACCCGCTTTTCCTCCTGTACCACAGGAATTCGTTGTGC
GTCGGCTTGGTCTCCTCAACACTGTTTGCCATGGCGTGCGCCCGATTCTC
TCCCTCTCTCTGTCTCTCTCTCACCTTCTCATTACCTCTCACTTGTACTC
TCCGCCGCTCTCTTCCTACTCCTTCTCCCCCCTCTCCCCCCCCCCCGCCG
CCACTTCGACAGGGGGCGTGGCGGCTAAACTCGATGTTCTCCCGGCGGAG
GAAAAGGGGTTCCTGGAGAAAAACAGGCCGGGGATCACCATGATGTTCGG
CGTTATCATCGCGTCCGGAATCGTCAAGTTCCTCAGGTGCGTGGCCAAAT
CAAGACGCGTTGTACTTGAATGGTAACAAGGATCGCCGCACGCACTATGA
GACACAGGTCAACCGAGTGTTGCGACAGGGTTCTTCGTTTTCGGAACGAC
TTGTGGGAAACTCCGGGTTCCGTTGGAAAACGGCGATGCCCGACGGAATT
CCACCAAATCGCCCCGCACACTAGGCGCCAGATTTTGTTCAGTGCCGTCC
GACGCCACTCACGCCAATGCCACCGTGTAACAACGACGTCAAAGGGCAGA
GTATGCAGTGCCTACTCTTGGCCTTGGAAAAAATATTGGAAAAATATCGG
GAAATGATCACCGATTGCGTTGGCCAGAGGTGGGTATTTTCACTACTAAA
ATAGTGTGGACGACTATCGAGGTTATTCTTCGTAGAGTCCCCCCTCGGCA
CGGTTTTGTTGTACACTCGTATCGACCTTGCGCTCGATCGCATGGTGCAT
CTTCGAAGGGCGTTGGTTGTCGCTGCTTCTCTTGTACGGCGCATCCCAGA
AGGCCAGGAGTGATAACGCTCAAGGATGACCGCCTCGTCAACAATCCCAT
CACCCTCTGTCCCCCCTCCGCTCTCCCTCTCTGCGCGGAAATATACCACG
GCTTGTGTACCCAAGCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTA
AGGCAGACAGGCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCA
GAGCCGTCGGTAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAA
GAAAAAGGAAGGCGGCAATAACGTCAAGCAAGACTGATCTGCCCAGTGTG
TTCATAAGTAGTCTTGTCGGGGAAACACCAACGATCTCGTAGGTACCAGC
GTCATGTAGGTGTACGTGTACCTGTACCTTTTGTGTTCTTCTTGACATGT
CATCGGCCGCGCTAACCGGCTGACCAGTGAAAAGTGTTTTGCGGGGTAAA
ACAAGCGAAAAAAATGTTTTTGTTCCCTGACGGGGGAACGCGGGACGCGC
GGAGGAGATTGGACGATAGGGCATGTGTGCGCCCCGCGTGTCTCAAATAT
GCATAGGATTAGTATTTCACAATCTTTGACGTATGTTGTTTTACTATTTA
CCGGCAACGTAGGGTACGTCGGTTGAGAAATGATATGTTTGTGGATTCAT
GTCTCAGTCCTTCCTCAAACATTTGCGAGCCAAGTCACCGGAGGTGTAAA
AAAATTGGAGTGTGTAGTGGCGAGCAGAAACAACGTTGTTCTTTGCCCTC
CTCGCCTATGTCGCGCGAGTTGAAAAAATCAGAGGCGTGTGTGATCACGA
GCAGACAGAACTCGGTTCCGGCTGTTGTCGCTGCTTCCTCTAGTGTGTGC
GGTCGTCCCCATCTATTCTGGCGCCAGTCTGCGCAACTTTCGGTGTACCA
GGCACAAGCGTCGACAAAAATTCCGGTGTCACATAGGAAAAAGGTCAT

Coding sequence (CDS) from alignment at Scaffold_347:317458..323255+

>EsuBft981_9a-0001 ID=EsuBft981_9a-0001|Name=EsuBft981_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=777bp|location=Sequence derived from alignment at Scaffold_347:317458..323255+ (Ectocarpus subulatus male Bft15b)
ATGGCGCCAACAGGTCGATGGAACAGAATGTGGTTCGTGCTCGTGATAAC
TTTCGTAACGCTGTTGTCTTCGCACGCTGATGCTGCTAGGCTTGGGGGAG
AAGGTGTCGCGCTCACCCGATCCGGGGACGTCCTCAGCGCGGATGGAAGC
ACTCAAGAAGAGTACGAGGTGCGGGAATCGGATCCTATTACGGCTCACTT
CATCTCGTTGGGCTCGGCAGCGCAGAAGCTGCTGAACAAGTCGGGTTACG
CCTTCGGTTCCCTCGTTCGGATCTCACACTCAGATAGAGACAAAGAGTAC
GGCGAGGGGCCGGAGAGAACGGCGTGGTTTCCCATGGTGGTTTTCTTAGA
CGTTTTCGAAGAGGGGTCGGGGGACAACGGCGAAGACATGACGGCGCGGT
ACGAGGTGGCGTTGGATTTCCACCCGAAGACAATCGCCGCTCCGGGGCTA
GTGGTCCTCGCGGCGTGGAAGATCAACACGGACGGGGGCGTGGCGGCTAA
ACTCGATGTTCTCCCGGCGGAGGAAAAGGGGTTCCTGGAGAAAAACAGGC
CGGGGATCACCATGATGTTCGGCGTTATCATCGCGTCCGGAATCGTCAAG
TTCCTCAGACGCGGTCTCGAACGGCTCGTGAAGAAGGCTAAGGCAGACAG
GCAAGAGGGAACGGCAACCGCAGCGCCAGCGACGGAGGCAGAGCCGTCGG
TAGCGGCGGCACGAGGAAAGGGCGCCGAAAATCCCAAGAAGAAAAAGGAA
GGCGGCAATAACGTCAAGCAAGACTGA