EsuBft981_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft981_13a-0001
Unique Name	EsuBft981_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:251780..252932 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005100548.1
ProteomeId	EsuBft981_13
Protein domains	PTHR19446
Protein domains	SSF56672
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	transposon tx1 uncharacterized 149 kda protein os:xenopus laevis pe:3 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1153
Hectar predicted targeting category	other localisation
Evalue	2.73e-65
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3E41I@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft981_13a	EsuBft981_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 251780..252932 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_13a-0001-exon	EsuBft981_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 251780..252932 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_13a-0001-exon	agat-three_prime_utr-23751	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 251780..251828 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_13a-0001-cds	EsuBft981_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 251829..252932 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft981_13a-0001	EsuBft981_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 251829..252932 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:251780..252932-
coding sequence from alignment at Scaffold_347:251780..252932-

spliced messenger RNA

>EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

protein sequence of EsuBft981_13a-0001

>EsuBft981_13 ID=EsuBft981_13|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MRGNWNSATWRVLKAACKGVATAVEMGIYADLGGYVTELEAIYKDRDMRG
LYQHLKRSVGLSGRQAGGQQFVADENGVLLRNRDDILQRWARFFSTLLRT
EFPTLNPDIIERVTQRPATRDTQRLGDVPELEEVARATKGLKNWKAPGHD
SLPAELLKIDDDEPFVLGHLHTILVKVWNGGDVPREWKDATIKVLYKKGD
RSNCNNYRGISLLSHVGKVPIKIITNCLTAFCEANNILPEEQGGFRPGRS
TVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGI
PAKLIEVIRQFHDGMRARVRMDDGKLSNCFFVTQGVRQGCVLSPLLFNII
FAEVLEVVVIRFSEDDVX

mRNA from alignment at Scaffold_347:251780..252932-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1153bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

Coding sequence (CDS) from alignment at Scaffold_347:251780..252932-

>EsuBft981_13a-0001 ID=EsuBft981_13a-0001|Name=EsuBft981_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1104bp|location=Sequence derived from alignment at Scaffold_347:251780..252932- (Ectocarpus subulatus male Bft15b)
ATGAGGGGCAACTGGAACTCAGCGACGTGGAGGGTTCTCAAAGCAGCGTG
TAAGGGAGTGGCTACAGCAGTCGAAATGGGCATTTATGCCGACCTGGGCG
GATATGTGACGGAACTCGAAGCAATCTACAAAGATCGCGACATGCGAGGA
TTGTACCAACACCTCAAGAGATCAGTGGGCCTCAGCGGGAGACAAGCGGG
GGGACAGCAGTTCGTCGCGGATGAGAACGGCGTGTTGCTCCGGAACAGGG
ACGACATCCTCCAGCGGTGGGCGAGATTCTTCAGCACCCTTCTCCGCACC
GAATTCCCCACCCTGAACCCAGACATCATCGAACGAGTGACGCAGCGACC
AGCGACACGTGACACTCAACGGTTGGGAGATGTGCCAGAACTCGAGGAGG
TGGCACGGGCAACGAAAGGCCTCAAGAACTGGAAGGCACCCGGCCATGAC
TCCCTCCCTGCCGAGTTGCTCAAGATCGATGACGACGAACCCTTCGTCCT
GGGACACCTCCATACCATCCTCGTCAAGGTGTGGAACGGAGGAGATGTTC
CGCGAGAGTGGAAGGATGCAACCATCAAGGTGCTGTACAAGAAGGGTGAC
CGGTCCAACTGTAACAACTACAGGGGGATTTCGCTACTATCTCACGTAGG
CAAGGTCCCCATCAAGATCATCACCAACTGTCTAACCGCCTTCTGCGAAG
CCAACAACATCCTCCCGGAGGAACAGGGCGGATTTCGACCCGGGCGATCC
ACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGAG
AAAGAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATG
ATTCGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATT
CCCGCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGC
CCGGGTGCGCATGGACGACGGAAAACTATCGAACTGCTTCTTCGTTACAC
AGGGCGTGCGACAAGGGTGTGTGCTATCCCCACTGCTGTTCAACATCATC
TTCGCGGAGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGT
NNNN