EsuBft981_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft981_15a-0001
Unique NameEsuBft981_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:245580..247553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHW9
ProteomeIdEsuBft981_15
Protein domainsPTHR32134
Protein domainsSSF52058
Protein domainsG3DSA
Protein domainsIPR008615
Ownerapollo_admin@sb-roscoff.fr
Notef-box and fnip repeat-containing protein l60 os:acanthamoeba polyphaga mimivirus gn:mimi [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1131
Hectar predicted targeting categoryother localisation
Evalue1.39e-08
EggNOG OGs2E9BD@1|root,2SFQ3@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionFNIP Repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft981_15aEsuBft981_15aEctocarpus subulatus male Bft15bgeneScaffold_347 245580..247553 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_15a-0001-exonagat-exon-78794Ectocarpus subulatus male Bft15bexonScaffold_347 245580..246308 -
EsuBft981_15a-0001-exonEsuBft981_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 246782..247054 -
EsuBft981_15a-0001-exonagat-exon-78793Ectocarpus subulatus male Bft15bexonScaffold_347 247425..247553 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_15a-0001-exonagat-three_prime_utr-23753Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 245580..245654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_15a-0001-cdsEsuBft981_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 245655..246308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft981_15a-0001EsuBft981_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 245655..247553 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1131bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTCCTCACGTTCGGGAGCTGG
TTTGACCGCCCCCTGGCCGGAGTACGCTTCCCGGACACTCTCGCGACCCT
TACCCTGGGGAGGGACTTCAACCAGCCTCTTGAAGGCATCCAATGGCCGC
AGCGGCTGGCTCGTCTGACTTTCGGGTTCTTCTTCAACCGGTCCATCCGA
ACCGCCGCAAAGAACTGGCCGTCCACGCTCAAGCACCTGTCCCTAGGGGA
CTGCTACAACTTGCCTGTCGAAGACGTGGAGTGGCCCCGGGGGTTGGAAG
AGATATCGTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGG
CCTCCGGCCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCAT
CGCCGGTGCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCG
CCTTCAACCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGG
CTGGTGTTCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCC
GCCGGGGCTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAG
CCGCTGCGGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGC
TTCAACAAGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTG
CCGCTTCGGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCC
ACAGCGTGCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGC
AACGTAGTTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTT
CGACCGTAAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGA
TAGAGTTCGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGC
AGTTGACCTGTTCCGGTTTCTCGCCGATAGATGGGCCGTTTAGGAGAGCT
GGAGTGTGACTGATTGGGAAGGCCTTTGTGG
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protein sequence of EsuBft981_15a-0001

>EsuBft981_15 ID=EsuBft981_15|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=351bp
MFLSARFNRAIDEVTWPQSLKKLTFGCNFNQPVLGVQWPPELEVLTFGSW
FDRPLAGVRFPDTLATLTLGRDFNQPLEGIQWPQRLARLTFGFFFNRSIR
TAAKNWPSTLKHLSLGDCYNLPVEDVEWPRGLEEISFGRGFNQEVEGVEW
PPALRKVKFGACFDQSIAGAGFPEELETLELGFAFNRPFLDVVLPSGLKR
LVFGEEFNRAVEGVGFPPGLEEINFGVQFDQPVAAAVWPASLKKLTFGDS
FNKPLAGIGLPDGLLDCRFGKCFNQEIEQVSWPHSVRCLVFGEEFNHPIC
NVVWPESLTTLKLGSDFDRKMEAGVVFPPGLDRIEFVDTYRRVESGGEDS
S
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mRNA from alignment at Scaffold_347:245580..247553-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1974bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTACGAAAAGGTGGCATGATG
AATGGGGCGGGGGTAGGAAAGAAAAGCCGTATGCATCATTCGGGAGGGAC
ACTTCCGTCCGTGGAATTGGAGAAATTACCGATGGCGTAGGGCCTAGTGA
TTCCGCAGGGGCTTACCGTTTCGAAAGCAAGGATCTATTTTTGTACACAC
GCGCTGTTTTGCACACTTCGGGGGCGAAACTGGACAGTCAGGAGAATCCC
GCAGCAGTAGTGTACCACCGTCTTAGCTTGAAAGATTGGGCAGTGTGTGC
GAAACTGACCACCGACCAGCTAGGGGACGCAAAGCGACTTCCCAACTACA
GCCTCCTTGCAATGCTTGTGCTGCCTTGGGGGCCAACGTACGCGCGCAGG
TCCTCACGTTCGGGAGCTGGTTTGACCGCCCCCTGGCCGGAGTACGCTTC
CCGGACACTCTCGCGACCCTTACCCTGGGGAGGGACTTCAACCAGCCTCT
TGAAGGCATCCAATGGCCGCAGCGGCTGGCTCGTCTGACTTTCGGGTTCT
TCTTCAACCGGTCCATCCGAACCGCCGCAAAGAACTGGCCGTCCACGCTC
AAGCACCTGTCCCTAGGGGACTGCTACAACTTGCCTGTCGAAGACGTGGA
GTGGCCCCGGGGGTTGGAAGAGGTGAGAGGCCTCCTATGGTTGTCGAATA
AGCACCACCACATGTAGGGCTCAATAGCAATTACTATGTGGTGTACCGCT
GCGGCTACAGATTTGACGGTAGCCCAAATATGTGGTGACTGCGAGAGAAG
AACGCAGGGAGGCGGGGTGGGGAGTAGGGTGATCCCAAGGTTTTTCAACC
CATGGCGGGGTGGGGGGGCACCTCACGAAAGAGTCTGGAACGCGCGGAAG
GGGGGAGGTGCCGATCGGGCGTTCGCGTCCGTGTCCGGCCCTGTAGCAGA
TGGTTTTGAGCGACGCAAACTACATCCTGACCGTCATCACTCCCCGCGGT
ACCCAGACCTGAACCGCACTCGTGAAGGTACCTTTGTGTGTGTTAGTCCC
TGAGCCTCGTCCTCCCCGTCGCTGTCGTTGTCTGGTGCTGGTGAATCTTG
CCTTGTTCGTTGCTGTCCGTCACACACATGCACACGCGCGCGCAGATATC
GTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGGCCTCCGG
CCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCATCGCCGGT
GCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCGCCTTCAA
CCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGGCTGGTGT
TCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCCGCCGGGG
CTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAGCCGCTGC
GGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGCTTCAACA
AGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTGCCGCTTC
GGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCCACAGCGT
GCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGCAACGTAG
TTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTTCGACCGT
AAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGATAGAGTT
CGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGCAGTTGAC
CTGTTCCGGTTTCTCGCCGATAGATGGGCCGTTTAGGAGAGCTGGAGTGT
GACTGATTGGGAAGGCCTTTGTGG
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Coding sequence (CDS) from alignment at Scaffold_347:245580..247553-

>EsuBft981_15a-0001 ID=EsuBft981_15a-0001|Name=EsuBft981_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1056bp|location=Sequence derived from alignment at Scaffold_347:245580..247553- (Ectocarpus subulatus male Bft15b)
ATGTTTTTATCCGCTAGGTTTAATAGGGCGATCGATGAAGTAACGTGGCC
GCAGTCGCTGAAGAAGCTCACGTTCGGCTGCAACTTTAATCAGCCGGTTC
TAGGGGTACAGTGGCCTCCGGAGCTAGAGGTCCTCACGTTCGGGAGCTGG
TTTGACCGCCCCCTGGCCGGAGTACGCTTCCCGGACACTCTCGCGACCCT
TACCCTGGGGAGGGACTTCAACCAGCCTCTTGAAGGCATCCAATGGCCGC
AGCGGCTGGCTCGTCTGACTTTCGGGTTCTTCTTCAACCGGTCCATCCGA
ACCGCCGCAAAGAACTGGCCGTCCACGCTCAAGCACCTGTCCCTAGGGGA
CTGCTACAACTTGCCTGTCGAAGACGTGGAGTGGCCCCGGGGGTTGGAAG
AGATATCGTTCGGTCGCGGGTTCAACCAAGAAGTTGAGGGAGTTGAATGG
CCTCCGGCCCTGAGAAAGGTCAAGTTCGGGGCTTGCTTCGACCAAAGCAT
CGCCGGTGCCGGCTTTCCAGAAGAGTTGGAGACGCTTGAGCTAGGGTTCG
CCTTCAACCGTCCGTTCCTTGACGTCGTTTTGCCAAGTGGACTTAAGAGG
CTGGTGTTCGGCGAGGAGTTCAACCGTGCCGTGGAGGGCGTCGGTTTTCC
GCCGGGGCTGGAGGAGATTAACTTCGGCGTGCAGTTCGATCAGCCGGTAG
CCGCTGCGGTCTGGCCCGCATCGCTGAAGAAGCTGACGTTTGGGGACAGC
TTCAACAAGCCGCTGGCTGGGATAGGGCTTCCCGACGGCCTGCTGGATTG
CCGCTTCGGGAAGTGTTTCAACCAGGAGATCGAGCAAGTTTCGTGGCCCC
ACAGCGTGCGTTGTCTAGTGTTTGGCGAGGAATTCAACCACCCCATCTGC
AACGTAGTTTGGCCCGAATCGCTGACGACGCTGAAGCTGGGGAGCGACTT
CGACCGTAAGATGGAGGCCGGGGTCGTGTTTCCTCCGGGCCTGGATAGGA
TAGAGTTCGTGGACACCTACAGACGTGTGGAAAGCGGCGGAGAGGACAGC
AGTTGA
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