EsuBft2505_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2505_4a-0001
Unique Name	EsuBft2505_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:204419..208129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2505_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	162
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a	EsuBft2505_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 204419..208129 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a-0001	EsuBft2505_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 204637..208068 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a-0001-exon	agat-exon-89434	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 204419..204948 +
EsuBft2505_4a-0001-exon	agat-exon-89432	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 205564..205712 +
EsuBft2505_4a-0001-exon	agat-exon-89431	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 206366..206381 +
EsuBft2505_4a-0001-exon	agat-exon-89435	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 206966..207618 +
EsuBft2505_4a-0001-exon	agat-exon-89433	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 207701..207722 +
EsuBft2505_4a-0001-exon	EsuBft2505_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 207877..208129 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a-0001-exon	agat-five_prime_utr-6475	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_347 204419..204636 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a-0001-cds	EsuBft2505_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 204637..204948 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2505_4a-0001-exon	agat-three_prime_utr-10112	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_347 208069..208129 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:204419..208129+
coding sequence from alignment at Scaffold_347:204419..208129+

spliced messenger RNA

>EsuBft2505_4a-0001 ID=EsuBft2505_4a-0001|Name=EsuBft2505_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1623bp|location=Sequence derived from alignment at Scaffold_347:204419..208129+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTAGAGTGAGCAAGGGTGGGGCGAGCACCACAGCACCACAGCACCACCC
GTCGCTCGACCAACGCACGAAAGCAGAACACAATACCGGAACACAATAAT
ATCGGAACACAACGACTCAACAGGGGCTACCGTACTTATAAACGTACCAT
AAATCCTCGGGGTGATGCACTATCCACGAAGAACATTCCTACAGAACGTT
CCTCGCTGTTCTGATAATATGTGGCTACTCGGCAGTCTGCAACGCCGACA
GTCCCGCAATTCAAAACTGTCCAATCAAATTGTGCTACGTTACTCTGTCG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTACGCCCACCCCCTGCCCCCCCGGTGTTTGCCATCGGG
ATTGGGTTTTCGTCGCTTGGCAACGACGTTAACCTGCCCTTCGAGACGCT
CATCAGTAGGTGCAAGCAACTGTTTGACGATAACAGGAGGAGCAAAAAAA
AGGCGGAGAGGGACTCCGAGGGCAAGACCGGGGAGGGCGAGAAGGACGCT
GAAGTATTCGACGAGGAGAACGAGGAGGGGGGTTGCAAAAGAACGGATTG
CGAATTGCTCAAGGCTATGGCATGTCGTGAGGCCGGGATGGCGTCGAAGA
AGAAGGGCACAGGCCCGTCGAAGAAGCACATGGCACAGGGACTGGCGTTG
CGTGAAAGTGCCCGCGACGGTTCGCCAGGCCGAGGTGCGACACAGGGTTT
CCCGGTGGTACAACCGGCAGGTGGCAGAGGCAAGGGCAGCAGCAGCAACT
CCATGTCCCGTTACTCTGCGGCCGCTGCGGCGAACAACCAGTCCCGGGGG
AAGGACTGTCGGTTCCGACGGGAATCAGAGACCTGTGACGGCGAAGTTTC
TTCTCGTTCGTTGGCAACCGCAACCGGTGAAGACGAGGAGGAAGAGGAGG
GGCTATCCGACGAACCAGATGCTTGGGACGAAGAATGGAAGGCGTCCCTG
ATAGCAAGCGGCAAGGCTGGGCGGGAGACGAGGAGCGGGAAGGGTGGGGG
AAAGCGGACCCGGTCTGGTCCACCTCTATCCTCCACGATATGTGGCTCTG
CCGGCCTCCAAAACAGGCTGAACAGCGTGAGCGGCTTGGTCTGCCAAAAA
ATGACCGCGCTGGCGGTGCCGACTGTGGGTGGTGGCGAGCAGGGAGGGGC
GAGCAGCAGGACGGAATCGGATGAGATCAAAGACCTGCTCAAGAGCAGGC
GCGCTTCCTCCCTTCGGCGGGTGAACCAGCAGATCTTCAACGCAATGGGG
ATGATGCATGGTGGCGTCCAACCGCACCCACTCGGGATGCAAGCGGGTGC
AGGCGCGCTTCCTCCCTTCGGCGGGTACGCTGGATTCGGCGGTAGCGCCG
CCTCGGCAGGGCTGGCTCTTCCTGCAGCTGTCGGAGTACCTCCTCCTGCG
CAACCTTCGTAGGGTGCAACCGCGGCGGGTGCAAGGGCGTTGCCCGTGGT
TGCTGGGGGCGGACAAGCCGCCC

protein sequence of EsuBft2505_4a-0001

>EsuBft2505_4 ID=EsuBft2505_4|Name=EsuBft2505_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=447bp
MWLLGSLQRRQSRNSKLSNQIVLRYSVXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPPAPPVFAIGIGFSSL
GNDVNLPFETLISRCKQLFDDNRRSKKKAERDSEGKTGEGEKDAEVFDEE
NEEGGCKRTDCELLKAMACREAGMASKKKGTGPSKKHMAQGLALRESARD
GSPGRGATQGFPVVQPAGGRGKGSSSNSMSRYSAAAAANNQSRGKDCRFR
RESETCDGEVSSRSLATATGEDEEEEEGLSDEPDAWDEEWKASLIASGKA
GRETRSGKGGGKRTRSGPPLSSTICGSAGLQNRLNSVSGLVCQKMTALAV
PTVGGGEQGGASSRTESDEIKDLLKSRRASSLRRVNQQIFNAMGMMHGGV
QPHPLGMQAGAGALPPFGGYAGFGGSAASAGLALPAAVGVPPPAQPS

mRNA from alignment at Scaffold_347:204419..208129+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2505_4a-0001 ID=EsuBft2505_4a-0001|Name=EsuBft2505_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3711bp|location=Sequence derived from alignment at Scaffold_347:204419..208129+ (Ectocarpus subulatus male Bft15b)
GGTAGAGTGAGCAAGGGTGGGGCGAGCACCACAGCACCACAGCACCACCC
GTCGCTCGACCAACGCACGAAAGCAGAACACAATACCGGAACACAATAAT
ATCGGAACACAACGACTCAACAGGGGCTACCGTACTTATAAACGTACCAT
AAATCCTCGGGGTGATGCACTATCCACGAAGAACATTCCTACAGAACGTT
CCTCGCTGTTCTGATAATATGTGGCTACTCGGCAGTCTGCAACGCCGACA
GTCCCGCAATTCAAAACTGTCCAATCAAATTGTGCTACGTTACTCTGTCG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTACGCCCACCCCCTGCCCCCCCGGTGTTTGCCATCGGG
ATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCACT
TCGTGAACTCGGCAACCAGGCTACCGGGTTTTTTTTTACCTCCGGTTTTT
TTATTGGCGGTAACCATACTGGTGGTCGAGTAGATCATGTTGTGCGGGGT
GGAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGAAGTGAAAGCACCAGAGAGTAAATTAAGTCA
TACGCAGCTGTCATTCGTACGCAAGGAAGTAAGCAGAAGATGCCGAACAC
CCTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCACG
GCGCTTCGCGCTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGT
GCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGTCTAACGACTACG
GCATGCACGACTATGAGTTCACCCTCCTCCCCCCCTATACCGCAGAACCT
GCCCTTCGAGACGCTCATCAGTAGGTGCAAGCAACTGTTTGACGATAACA
GGAGGAGCAAAAAAAAGGCGGAGAGGGACTCCGAGGGCAAGACCGGGGAG
GGCGAGAAGGACGCTGAAGTATTCGACGAGGAGAACGAGGAGGGGTGCGA
GGCAAGTCGATCTTGTTGTGTGTTTTAGAGGCCTCGCAAACCATGAAGCG
GAACCGCGTTGCTATTCGGTGGTTGCCGACATGCAGTTGATAACGTGCCG
CCATAATGCCTAAACTGACGCAAATAAGTTTTCGAAGACCTGAAGTCAGA
GGCCGGTTGGCCCGAAGGGTTTCTCAGCATCATCGAGTAATATTTCGGGT
GTTGCTGTAGTCCTTCTCACGCGGGCCCTTGCGTTCGTAGGACGCGGCGT
AGACGCGGCGTCATCTTCCATAACTAAATCTAGACCATGCACTCAAAAGA
ACAATGCATAGTCTTGCTACGCTTATTTTTCGCCAGCGGTACTGGCCACC
CACCCACCCCACCCACGACGGTTGCGTTGATTAGACTATAGCGTCGATAA
CTTTGGGAACGCCAAATGTTAATCACCCAGTTTTCCCCGTGGAGATGGTG
CAAAGTCCGCCGCCAATCTCTTACAGCGCAAAAAGTCGTCCTTCCCCTGG
CAACCGCTCAAGGCGGGCGTGGGCGTAGCGCCTACCTTGTCGAACTTGTT
AAGGTGTCAGGGTTAGCCAAACCATAAGTATATTCGGGGGTAGGTAGCAG
TGAAACCGCTGAGAGCTACGTAAGAGCTATGTAGGTCACAGATGTAGGGG
TTGCAAAAGAACGGTACAAATGCCCGTGAAACTCAGAGAGGACCAGCACG
GTTGCGATACCAATGTTGCCTGGCTGGGTTACGTTAGAACGCGTACGGCG
TGTAGTATGTGGATCACTGCACCCCCGTGTCCGGCGGGTCCTACGCAGTC
CATCTCGTCTTGTGCTTTTGGTCGAGCAAAGCGGTTATGAGTTCACTCGA
GCGAAGCGGACCTTTTTTTTTTGCCCGCCGCATTTGTCGTTGGGGCATCC
ATTGACGCCCCCCCTCCCCCCCCAATACCCCCGCCAAACAACCAAACAAG
TACCCTCGAGCCAAATAATGGTGTGCAAAGTNCCCCACTGGTTGTAGGTT
TCCCGGAGCAGGGTCATAGACTGATCTGGGCAGGAGCTTGCATTAACTTC
AGAATCGAATGATCATGTGTTGTAGACGTGCGCTGCCTTCACTAAACTGT
TCGATTATATGTAACTAACGACATGTAGCTATTAGTCCAGGAGGGCGACA
ACAAGCAGCAAGAGCTGGGAGTGCATGGTCTCTGCCGCCCTGACGTGCCC
GCCCCACATGTCCATTCTTCGTCTGACATGTGCTGTGCGTCGTTCAGGAT
TGCGAATTGCTCAAGGCTATGGCATGTCGTGAGGCCGGGATGGCGTCGAA
GAAGAAGGGCACAGGCCCGTCGAAGAAGCACATGGCACAGGGACTGGCGT
TGCGTGAAAGTGCCCGCGACGGTTCGCCAGGCCGAGGTGCGACACAGGGT
TTCCCGGTGGTACAACCGGCAGGTGGCAGAGGCAAGGGCAGCAGCAGCAA
CTCCATGTCCCGTTACTCTGCGGCCGCTGCGGCGAACAACCAGTCCCGGG
GGAAGGACTGTCGGTTCCGACGGGAATCAGAGACCTGTGACGGCGAAGTT
TCTTCTCGTTCGTTGGCAACCGCAACCGGTGAAGACGAGGAGGAAGAGGA
GGGGCTATCCGACGAACCAGATGCTTGGGACGAAGAATGGAAGGCGTCCC
TGATAGCAAGCGGCAAGGCTGGGCGGGAGACGAGGAGCGGGAAGGGTGGG
GGAAAGCGGACCCGGTCTGGTCCACCTCTATCCTCCACGATATGTGGCTC
TGCCGGCCTCCAAAACAGGCTGAACAGCGTGAGCGGCTTGGTCTGCCAAA
AAATGACCGCGCTGGCGGTGCCGACTGTGGGTGGTGGCGAGCAGGGAGGG
GCGAGCAGCAGGACGGAATCGGATGAGATCAAAGACCTGCTCAAGAGCAG
GTGAACCAGCAGATCTTCAACGCAATGGGGATGATGCATGGTGGCGTCCA
ACCGCACCCACTCGGGATGCAAGCGGGTGCAGGCGCGCTTCCTCCCTTCG
GCGGGTACGCTGGATTCGGCGGTAGCGCCGCCTCGGCAGGGCTGGCTCTT
CCTGCAGCTGTCGGAGTACCTCCTCCTGCGCAACCTTCGTAGGGTGCAAC
CGCGGCGGGTGCAAGGGCGTTGCCCGTGGTTGCTGGGGGNAGACCTGCTC
AAGAGCAGGTGAACCAGCAGATCTTCAACGCAATGGGGATGATGCATGGT
GGCGTCCAACCGCACCCACTCGGGATGCAAGCGGGTGCAGGCGCGCTTCC
TCCCTTCGGCGGGTACGCTGGATTCGGCGGTAGCGCCGCCTCGGCAGGGC
TGGCTCTTCCTGCAGCTGTCGGAGTACCTCCTCCTGCGCAACCTTCGTAG
GGTGCAACCGCGGCGGGTGCAAGGGCGTTGCCCGTGGTTGCTGGGGGCGG
ACAAGCCGCCC

Coding sequence (CDS) from alignment at Scaffold_347:204419..208129+

>EsuBft2505_4a-0001 ID=EsuBft2505_4a-0001|Name=EsuBft2505_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1344bp|location=Sequence derived from alignment at Scaffold_347:204419..208129+ (Ectocarpus subulatus male Bft15b)
ATGTGGCTACTCGGCAGTCTGCAACGCCGACAGTCCCGCAATTCAAAACT
GTCCAATCAAATTGTGCTACGTTACTCTGTCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCC
CACCCCCTGCCCCCCCGGTGTTTGCCATCGGGATTGGGTTTTCGTCGCTT
GGCAACGACGTTAACCTGCCCTTCGAGACGCTCATCAGTAGGTGCAAGCA
ACTGTTTGACGATAACAGGAGGAGCAAAAAAAAGGCGGAGAGGGACTCCG
AGGGCAAGACCGGGGAGGGCGAGAAGGACGCTGAAGTATTCGACGAGGAG
AACGAGGAGGGGGGTTGCAAAAGAACGGATTGCGAATTGCTCAAGGCTAT
GGCATGTCGTGAGGCCGGGATGGCGTCGAAGAAGAAGGGCACAGGCCCGT
CGAAGAAGCACATGGCACAGGGACTGGCGTTGCGTGAAAGTGCCCGCGAC
GGTTCGCCAGGCCGAGGTGCGACACAGGGTTTCCCGGTGGTACAACCGGC
AGGTGGCAGAGGCAAGGGCAGCAGCAGCAACTCCATGTCCCGTTACTCTG
CGGCCGCTGCGGCGAACAACCAGTCCCGGGGGAAGGACTGTCGGTTCCGA
CGGGAATCAGAGACCTGTGACGGCGAAGTTTCTTCTCGTTCGTTGGCAAC
CGCAACCGGTGAAGACGAGGAGGAAGAGGAGGGGCTATCCGACGAACCAG
ATGCTTGGGACGAAGAATGGAAGGCGTCCCTGATAGCAAGCGGCAAGGCT
GGGCGGGAGACGAGGAGCGGGAAGGGTGGGGGAAAGCGGACCCGGTCTGG
TCCACCTCTATCCTCCACGATATGTGGCTCTGCCGGCCTCCAAAACAGGC
TGAACAGCGTGAGCGGCTTGGTCTGCCAAAAAATGACCGCGCTGGCGGTG
CCGACTGTGGGTGGTGGCGAGCAGGGAGGGGCGAGCAGCAGGACGGAATC
GGATGAGATCAAAGACCTGCTCAAGAGCAGGCGCGCTTCCTCCCTTCGGC
GGGTGAACCAGCAGATCTTCAACGCAATGGGGATGATGCATGGTGGCGTC
CAACCGCACCCACTCGGGATGCAAGCGGGTGCAGGCGCGCTTCCTCCCTT
CGGCGGGTACGCTGGATTCGGCGGTAGCGCCGCCTCGGCAGGGCTGGCTC
TTCCTGCAGCTGTCGGAGTACCTCCTCCTGCGCAACCTTCGTAG