EsuBft2347_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2347_5a-0001
Unique NameEsuBft2347_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:185537..186359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2347_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length70
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5aEsuBft2347_5aEctocarpus subulatus male Bft15bgeneScaffold_347 185537..186359 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5a-0001-exonEsuBft2347_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 185537..185713 +
EsuBft2347_5a-0001-exonagat-exon-17731Ectocarpus subulatus male Bft15bexonScaffold_347 185835..186359 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5a-0001-exonagat-five_prime_utr-6053Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_347 185537..185628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5a-0001-cdsEsuBft2347_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 185629..185713 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5a-0001-exonagat-three_prime_utr-9434Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 186131..186359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2347_5a-0001EsuBft2347_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 185629..186130 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2347_5a-0001 ID=EsuBft2347_5a-0001|Name=EsuBft2347_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=702bp|location=Sequence derived from alignment at Scaffold_347:185537..186359+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCCATCTGGGGGGCTGCTGTACCCCTCATCTGGGTTGTGGTGCCTAGGC
GTGCTGCGCCTGTCTGACTGGCGTGCTGGAGGCGGTGGTGGTATGCCCGA
GCCGGAGGGTGGATCAGTGGCCAACAAGGGTGGGCAGCGTGCTGGGGGCA
AGGCGAAGCAGAAGCCTAACGACGAAGGTTCCACTCATCTCTGTTGGACG
CCTGCGGAGAAAGTCGTACTCTGGAAGGCGATCCAGAAACACAATCCTTT
TGCAGAGAGTGGGCAGAAGCTGGTGAGAAAACATTGGCGTAGGGCAGCCG
CTTTCGTCATCGAGGACCAGGACGTGGAGGTGTACACGAACGAAGGAGGC
AGGGAGACCGTCCTCGTGTGTTGCGCTCACGTTCTCCTTGTCGGTCGTAC
GGTAAGGGTCAGCATTACTTTGAACCTCCTAGTAGTGCGAGGCAGTGGTC
CCACGAGAACATTTCCCACATGACGTGCTCGTGTTTGACGTAGAAGGTGT
TTCGTCTATGCCGGAACAAGGTGCCACACTTTTCATTGTACGTTCATGTC
TGCTGTGAGTTTCTGGAGACGGGGGGGAGAGATTCCAGGCTCCCGCCACG
TTCTGAACTGCTAATTCTGGCGCAAGATAAAATACTGCTACACTATGCAT
GAGGGAGTTACGCCTATTACCACTGTATGCATAGCACTGACATGGCCGCC
AG
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protein sequence of EsuBft2347_5a-0001

>EsuBft2347_5 ID=EsuBft2347_5|Name=EsuBft2347_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MPEPEGGSVANKGGQRAGGKAKQKPNDEGSTHLCWTPAEKVVLWKAIQKH
NPFAESGQKLVRKHWRRAAAFVIEDQDVEVYTNEGGRETVLVCCAHVLLV
GRTVRVSITLNLLVVRGSGPTRTFPT
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mRNA from alignment at Scaffold_347:185537..186359+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2347_5a-0001 ID=EsuBft2347_5a-0001|Name=EsuBft2347_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=823bp|location=Sequence derived from alignment at Scaffold_347:185537..186359+ (Ectocarpus subulatus male Bft15b)
ACCCATCTGGGGGGCTGCTGTACCCCTCATCTGGGTTGTGGTGCCTAGGC
GTGCTGCGCCTGTCTGACTGGCGTGCTGGAGGCGGTGGTGGTATGCCCGA
GCCGGAGGGTGGATCAGTGGCCAACAAGGGTGGGCAGCGTGCTGGGGGCA
AGGCGAAGCAGAAGCCTAACGACGAAGGTCAGTAATGATCACACAGCAGG
TCGAACTGAAGTTCTGCTCTACTCTTGCTGTAAAAGTGCAGACAAGAGCC
TGTCCTGACGCTCATCGATACGTACGCCCTCCTCCTGCACCTCGCCAGGT
TCCACTCATCTCTGTTGGACGCCTGCGGAGAAAGTCGTACTCTGGAAGGC
GATCCAGAAACACAATCCTTTTGCAGAGAGTGGGCAGAAGCTGGTGAGAA
AACATTGGCGTAGGGCAGCCGCTTTCGTCATCGAGGACCAGGACGTGGAG
GTGTACACGAACGAAGGAGGCAGGGAGACCGTCCTCGTGTGTTGCGCTCA
CGTTCTCCTTGTCGGTCGTACGGTAAGGGTCAGCATTACTTTGAACCTCC
TAGTAGTGCGAGGCAGTGGTCCCACGAGAACATTTCCCACATGACGTGCT
CGTGTTTGACGTAGAAGGTGTTTCGTCTATGCCGGAACAAGGTGCCACAC
TTTTCATTGTACGTTCATGTCTGCTGTGAGTTTCTGGAGACGGGGGGGAG
AGATTCCAGGCTCCCGCCACGTTCTGAACTGCTAATTCTGGCGCAAGATA
AAATACTGCTACACTATGCATGAGGGAGTTACGCCTATTACCACTGTATG
CATAGCACTGACATGGCCGCCAG
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Coding sequence (CDS) from alignment at Scaffold_347:185537..186359+

>EsuBft2347_5a-0001 ID=EsuBft2347_5a-0001|Name=EsuBft2347_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_347:185537..186359+ (Ectocarpus subulatus male Bft15b)
ATGCCCGAGCCGGAGGGTGGATCAGTGGCCAACAAGGGTGGGCAGCGTGC
TGGGGGCAAGGCGAAGCAGAAGCCTAACGACGAAGGTTCCACTCATCTCT
GTTGGACGCCTGCGGAGAAAGTCGTACTCTGGAAGGCGATCCAGAAACAC
AATCCTTTTGCAGAGAGTGGGCAGAAGCTGGTGAGAAAACATTGGCGTAG
GGCAGCCGCTTTCGTCATCGAGGACCAGGACGTGGAGGTGTACACGAACG
AAGGAGGCAGGGAGACCGTCCTCGTGTGTTGCGCTCACGTTCTCCTTGTC
GGTCGTACGGTAAGGGTCAGCATTACTTTGAACCTCCTAGTAGTGCGAGG
CAGTGGTCCCACGAGAACATTTCCCACATGA
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