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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 157072.XP_008863623.1 |
| ProteomeId | EsuBft2347_6 |
| Protein domains | PTHR10484 |
| Protein domains | IPR019809 |
| Protein domains | IPR007125 |
| Protein domains | IPR001951 |
| Protein domains | IPR009072 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | histone h4 os:solanum lycopersicum pe:3 sv:2 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 313 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.61e-64 |
| EggNOG OGs | COG2036@1|root,KOG3467@2759|Eukaryota |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| KEGG ko | ko:K11254 |
| KEGG Pathway | ko05034,ko05203,ko05322,map05034,map05203,map05322 |
| GOs | GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363 |
| Description | protein heterodimerization activity |
| COG category | B |
| BRITE | ko00000,ko00001,ko03036 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003677 |
| GO | 0000786 |
| GO | 0009414 |
| GO | 0055085 |
| GO | 0006334 |
| GO | 0005829 |
| GO | 0046982 |
| GO | 0005774 |
| GO | 0016168 |
| GO | 0005730 |
| GO | 0009506 |
| GO | 0009507 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAA back to topprotein sequence of EsuBft2347_6a-0001 >EsuBft2347_6 ID=EsuBft2347_6|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=103bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG back to topmRNA from alignment at Scaffold_347:184786..185098- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=313bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAAA back to topCoding sequence (CDS) from alignment at Scaffold_347:184786..185098- >EsuBft2347_6a-0001 ID=EsuBft2347_6a-0001|Name=EsuBft2347_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=312bp|location=Sequence derived from alignment at Scaffold_347:184786..185098- (Ectocarpus subulatus male Bft15b)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGTGCCAA
GCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACTAAGCCCG
CCATCCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCAT
CCGCGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTGACGG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGT
TTCGGCGGCTAA back to top
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