EsuBft1973_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1973_2a-0001
Unique Name	EsuBft1973_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_347	contig	Scaffold_347:172701..178907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1973_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	83
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1973_2a	EsuBft1973_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_347 172701..178907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1973_2a-0001	EsuBft1973_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_347 172701..178907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1973_2a-0001-exon	agat-exon-75672	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 172701..172971 +
EsuBft1973_2a-0001-exon	agat-exon-75673	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 173455..173689 +
EsuBft1973_2a-0001-exon	EsuBft1973_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 173960..174134 +
EsuBft1973_2a-0001-exon	agat-exon-75670	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 178454..178476 +
EsuBft1973_2a-0001-exon	agat-exon-75671	Ectocarpus subulatus male Bft15b	exon	Scaffold_347 178781..178907 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1973_2a-0001-cds	EsuBft1973_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_347 172701..172971 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_347:172701..178907+
coding sequence from alignment at Scaffold_347:172701..178907+

spliced messenger RNA

>EsuBft1973_2a-0001 ID=EsuBft1973_2a-0001|Name=EsuBft1973_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=831bp|location=Sequence derived from alignment at Scaffold_347:172701..178907+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCGACCCCGACGCCTCCGAGACGCCAGTCAGACAGGCGAAGCAC
GCCTGGGCATCACAACCCAGGTAAGGGGTACGGCAGCAACCCAGATGGGT
CTAGGTTGGCAGGAGAATTCGCACTCGCACGTCGAGGTGGGACCGCCACC
ACCCCCTTCTCCGTAGCACAACCCAGCCCGTCTCCTCTCGACGCAGCTGG
AGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCAAGGCGA
AGCAAAAGCCTAACGGCGAAGAGAGTGGGCAGAAGCTGGCGAGAGAACAT
TGGCGTAGGGTAGCCCCTTCCATGACCGAGGACCAGGACGTGGAGGTGTG
CACGAATGAAGGAGGCAGGAAGACCGTTCATGTGGCCATGCAGGAAAAGA
CCAAGGCGTGGGAGGATCGCGTGCGCATTGTATGCATATGCTTCAGAACT
TCGATCACGAAANGAGTGCAGGCACCGACAGCAGTTCTGTACAGATGTAT
CAGCGCACACAATCCTTTCGCAGAGAGTGGGCAGAAGCTGGCGAGAGAAC
ATTGGCGTAGGGTAGCCCCTTCCATGACCGAGGACCAGGACGTGGAGGTG
TGCACGAATGAAGGAGGCAGGAAGACCGTTCATGTGGCCATGCAGGAAAA
GACCAAGGCGTGGGAGGATCGCGTGCGCATTGGAAACGAAGTGATCACGG
ACGGGAGGAGCAAAGAAATGGCGGAGAAGGACTCCGAGGGCAAGACCGGG
GAAGGCAAGAAGGACGCCGGAGTATTCGACGAGGAGAACGAGGAGGGGTC
CGAGGCAAGTCGATCTTGTTCTGTGTTTTAG

protein sequence of EsuBft1973_2a-0001

>EsuBft1973_2 ID=EsuBft1973_2|Name=EsuBft1973_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=276bp
MGSTPTPPRRQSDRRSTPGHHNPGKGYGSNPDGSRLAGEFALARRGGTAT
TPFSVAQPSPSPLDAAGGWISSQQSGQRAGGKAKQKPNGEESGQKLAREH
WRRVAPSMTEDQDVEVCTNEGGRKTVHVAMQEKTKAWEDRVRIVCICFRT
SITKXVQAPTAVLYRCISAHNPFAESGQKLAREHWRRVAPSMTEDQDVEV
CTNEGGRKTVHVAMQEKTKAWEDRVRIGNEVITDGRSKEMAEKDSEGKTG
EGKKDAGVFDEENEEGSEASRSCSVF

mRNA from alignment at Scaffold_347:172701..178907+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1973_2a-0001 ID=EsuBft1973_2a-0001|Name=EsuBft1973_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6207bp|location=Sequence derived from alignment at Scaffold_347:172701..178907+ (Ectocarpus subulatus male Bft15b)
ATGGGCTCGACCCCGACGCCTCCGAGACGCCAGTCAGACAGGCGAAGCAC
GCCTGGGCATCACAACCCAGGTAAGGGGTACGGCAGCAACCCAGATGGGT
CTAGGTTGGCAGGAGAATTCGCACTCGCACGTCGAGGTGGGACCGCCACC
ACCCCCTTCTCCGTAGCACAACCCAGCCCGTCTCCTCTCGACGCAGCTGG
AGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCAAGGCGA
AGCAAAAGCCTAACGGCGAAGGTTAGTATCGATTGAGCCTCGCATAGGTA
CGCTCAAGCCGGCAACACAGCAGCGGTAGTGCAGCTCCATTTGGCGCATC
TAGGTGCAATACGCCGTGCGTCAGGTGCGACGGGCGGAAGCAGTTTTTTC
CCTCCGCTTGTATACGTGGCCGCCGAGTGCAGGCACCGACAGCAGTTCTG
TACAGATGTATCAGCGCGTATGTAAAAATGGTGGGGAGTGGCGGGTGTTG
CTTCATCTCGCGTTTCAACTTGGGCCATGTGTGTCTGGGCAAATAAAATT
TAACACAGGCTGTAATGATCACACAGCAGGTCGTACTGAAGGAATGCTCC
ACTCTCGCTGTAAAAGTGCAGACAAGGGCCTGTCCTGACGCACATCGATA
CGTACGCCTTCCTCCTGTACCTCGCCAGGTTCCACTCGTCTCTGTTGGAC
GCCTTCGGAGAAGGTCGTACTCTGGAAGGCGAAACAGACACAATCCTTTC
GCAGAGAGTGGGCAGAAGCTGGCGAGAGAACATTGGCGTAGGGTAGCCCC
TTCCATGACCGAGGACCAGGACGTGGAGGTGTGCACGAATGAAGGAGGCA
GGAAGACCGTTCATGTGGCCATGCAGGAAAAGACCAAGGCGTGGGAGGAT
CGCGTGCGCATTGTATGCATATGCTTCAGAACTTCGATCACGAAANGAGT
GCAGGCACCGACAGCAGTTCTGTACAGATGTATCAGCGCGTATGTAAAAA
TGGTGGGGAGTGGCGGGTGTTGCTTCATCTCGCGTTTCAACTTGGGCCAT
GTGTGTCTGGGCAAATAAAATTTAACACAGGCTGTAATGATCACACAGCA
GGTCGTACTGAAGGAATGCTCCACTCTCGCTGTAAAAGTGCAGACAAGGG
CCTGTCCTGACGCACATCGATACGTACGCCTTCCTCCTGTACCTCGCCAG
GTTCCACTCGTCTCTGTTGGACGCCTTCGGAGAAGGTCGTACTCTGGAAG
GCGAAACAGACACAATCCTTTCGCAGAGAGTGGGCAGAAGCTGGCGAGAG
AACATTGGCGTAGGGTAGCCCCTTCCATGACCGAGGACCAGGACGTGGAG
GTGTGCACGAATGAAGGAGGCAGGAAGACCGTTCATGTGGCCATGCAGGA
AAAGACCAAGGCGTGGGAGGATCGCGTGCGCATTGTATGCATATGCTTCA
GAACTTCGATCACGAAACCTCGTGTGTTGCACTCACGTTCTCCTTGTGGG
TCGTACGGTAAGGGTTAGCATCACTTTGAACCTTCTAGTAGTGTGAGGCA
GTGGTCCCACGACAACATTTCCCACATGACGTGCTCGCGTTTGGCTTGGA
AGGTGTTTCGTTTATGCCGGAACAAGGTGCCACACTTTCAATGTACGTTC
TTGTCTGCTGTGAGTTTCTGGAGACGGGGTGGAGATATTCCAGGCTCCCG
CCACGTTCTGAACTGCTAATTCTGGCGCAAGATGAAATACTGCTACACTA
TGCATGATGGAGTACAGTATGCATAGCACTGACATGACCGCCAGATATCG
GAGACGATTTGTTCCTCGCTAAACAGATACCCGCACGCTTCTCGCTTGCA
AGAGCCACAAACACACGAACAGGGTTACCGACTGCTGTTCTTATGCAACG
CACGAGCACATCAGTAGGTTCCCGTGTATGACGTCGCCGTGAGTTGCACG
CGACTCGAGTACATGTATCGGCTCTCACGATACTACTGTTGTAGTCTCAA
GCAAAACCCTAACGTTTGCACGGTGTGTCTTTGCCCCCCCCCCTACCCCC
CCCCATTGGGCGGTGGAGGACTCTCCGGCGTAAGATCCAAAATGGATCGA
ACGGTGGAGGGGGGGGGGGGGGGTTCGTTGCTTGAAGGGGNNNNNNNNNN
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NNNNNNNNNNNNTCTACGGCAACGTCGTACGTGTGCTTAATCGGAGGTGG
AAGTCTCGTTCCACCCTATCCCTTTCACACGTACGTAATGCTCTCCATCG
ACAGCACGGGACCTCCCTCTGCCACATTTTTATGCGAAAAAATGCGTGTG
CCCTGCGGGCGAAATGCCCACAACTAACATTGGAAGTACTTCGTTCTTTT
CAGGGAAACGAAGTGATCACGGACGGGTAGATCATGTTGTGCGGGGTCGA
GACCCTCACTCCGCCCAAGGGGGATGATCGCACCAGGTTGTGTTGAAATG
GCCAAGCACCCTCGAGGCAGTTATACAGTGCTTATAACCGTCTCTGGAAG
TGAAAGCATCAGAAAATAAATTAAGTAATACGCAACTGTCATCCGTATGC
AAGGAAGCACAAGATGCCGAAAACCCTTAGCACGATGCAGCGAACTCTTC
ATGCGACTCGCGGAATATCTCACGGCGCTTCGCGCTTGGTGATGTGAGAG
CCTGGTTCGGTGAGAACCCNACGATAGCAGGAGGAGCAAAGAAATGGCGG
AGAAGGACTCCGAGGGCAAGACCGGGGAAGGCAAGAAGGACGCCGGAGTA
TTCGACGAGGAGAACGAGGAGGGGTCCGAGGCAAGTCGATCTTGTTCTGT
GTTTTAG

Coding sequence (CDS) from alignment at Scaffold_347:172701..178907+

>EsuBft1973_2a-0001 ID=EsuBft1973_2a-0001|Name=EsuBft1973_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=831bp|location=Sequence derived from alignment at Scaffold_347:172701..178907+ (Ectocarpus subulatus male Bft15b)
ATGGGCTCGACCCCGACGCCTCCGAGACGCCAGTCAGACAGGCGAAGCAC
GCCTGGGCATCACAACCCAGGTAAGGGGTACGGCAGCAACCCAGATGGGT
CTAGGTTGGCAGGAGAATTCGCACTCGCACGTCGAGGTGGGACCGCCACC
ACCCCCTTCTCCGTAGCACAACCCAGCCCGTCTCCTCTCGACGCAGCTGG
AGGGTGGATCAGCAGCCAACAGAGTGGGCAGCGTGCCGGGGGCAAGGCGA
AGCAAAAGCCTAACGGCGAAGAGAGTGGGCAGAAGCTGGCGAGAGAACAT
TGGCGTAGGGTAGCCCCTTCCATGACCGAGGACCAGGACGTGGAGGTGTG
CACGAATGAAGGAGGCAGGAAGACCGTTCATGTGGCCATGCAGGAAAAGA
CCAAGGCGTGGGAGGATCGCGTGCGCATTGTATGCATATGCTTCAGAACT
TCGATCACGAAANGAGTGCAGGCACCGACAGCAGTTCTGTACAGATGTAT
CAGCGCACACAATCCTTTCGCAGAGAGTGGGCAGAAGCTGGCGAGAGAAC
ATTGGCGTAGGGTAGCCCCTTCCATGACCGAGGACCAGGACGTGGAGGTG
TGCACGAATGAAGGAGGCAGGAAGACCGTTCATGTGGCCATGCAGGAAAA
GACCAAGGCGTGGGAGGATCGCGTGCGCATTGGAAACGAAGTGATCACGG
ACGGGAGGAGCAAAGAAATGGCGGAGAAGGACTCCGAGGGCAAGACCGGG
GAAGGCAAGAAGGACGCCGGAGTATTCGACGAGGAGAACGAGGAGGGGTC
CGAGGCAAGTCGATCTTGTTCTGTGTTTTAG