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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FX25 |
| ProteomeId | EsuBft1973_3 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 25 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.62e-12 |
| EggNOG OGs | 2CM97@1|root,2QPNT@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | GAL3ST3 |
| KEGG rclass | RC00007,RC00231 |
| KEGG ko | ko:K01019,ko:K09676 |
| KEGG Reaction | R04017,R05105,R10805 |
| KEGG Pathway | ko00565,ko00600,ko01100,map00565,map00600,map01100 |
| KEGG Module | M00067 |
| GOs | GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681 |
| EC | 2.8.2.11 |
| Description | galactosylceramide sulfotransferase activity |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01003 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=252bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGACGAAACAAAGCGGGCAGCGTG
TGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGGCACT
TGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTGACGA
TATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTTAGGT
GA back to topprotein sequence of EsuBft1973_3a-0001 >EsuBft1973_3 ID=EsuBft1973_3|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MDSFTFQLSYFGGSSSVTSLRSAANKTKQSGQRVDLMHYHITARGQYWGT
WNEAETYYRDIMRNPDDINFVTVLREPRSHLLR back to topmRNA from alignment at Scaffold_347:165444..166070- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGGTGAGATGCCGTATTGCACATC
ATTGCTCATCCAGCACGAACGACACGTCTTTTGTGTCGACGCACCAACAG
CGGTACGCGGGTTAATCCGTCTCGACAAGGATTGTCAACATGGTCCAGGT
AGTGGTTCAACGACAAGCAACAACTTTTTCCTTCCCGCGTTGGTGCCCGG
CCGCTAAAACATTTCTGCCTGGTGGTGACTAGACGAAACAAAGCGGGCAG
CGTGTGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGG
CACTTGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTG
ACGATATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTT
AGGTACGTACAGCCTGCGTCATCAGCAGGAGTATACCGCAATTCCAATGG
GCGGAAATATTGAGGTGTGGGATGCATCACAAGATGACTCGTTCATGTGT
CTTATGTGCATCGAGCGCTGACCAGTCCTTTGGGTACACGAAGAGATTCA
ACAGGCTGGTTTCCAGGCTTCAGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_347:165444..166070- >EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGACGAAACAAAGCGGGCAGCGTG
TGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGGCACT
TGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTGACGA
TATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTTAGGT
GA back to top
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