EsuBft1973_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1973_3a-0001
Unique NameEsuBft1973_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:165444..166070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FX25
ProteomeIdEsuBft1973_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length25
Hectar predicted targeting categoryother localisation
Evalue3.62e-12
EggNOG OGs2CM97@1|root,2QPNT@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameGAL3ST3
KEGG rclassRC00007,RC00231
KEGG koko:K01019,ko:K09676
KEGG ReactionR04017,R05105,R10805
KEGG Pathwayko00565,ko00600,ko01100,map00565,map00600,map01100
KEGG ModuleM00067
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005975,GO:0005976,GO:0005996,GO:0006022,GO:0006029,GO:0006790,GO:0006807,GO:0008146,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009311,GO:0009987,GO:0016020,GO:0016021,GO:0016740,GO:0016782,GO:0017076,GO:0019538,GO:0030166,GO:0030246,GO:0030309,GO:0030554,GO:0031224,GO:0032553,GO:0032555,GO:0032559,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044425,GO:0050656,GO:0050694,GO:0050698,GO:0071704,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901681
EC2.8.2.11
Descriptiongalactosylceramide sulfotransferase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_3aEsuBft1973_3aEctocarpus subulatus male Bft15bgeneScaffold_347 165444..166070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_3a-0001-exonagat-exon-75674Ectocarpus subulatus male Bft15bexonScaffold_347 165444..165447 -
EsuBft1973_3a-0001-exonagat-exon-75675Ectocarpus subulatus male Bft15bexonScaffold_347 165619..165788 -
EsuBft1973_3a-0001-exonEsuBft1973_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 165993..166070 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_3a-0001-cdsEsuBft1973_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 165444..165447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1973_3a-0001EsuBft1973_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 165444..166070 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=252bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGACGAAACAAAGCGGGCAGCGTG
TGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGGCACT
TGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTGACGA
TATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTTAGGT
GA
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protein sequence of EsuBft1973_3a-0001

>EsuBft1973_3 ID=EsuBft1973_3|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MDSFTFQLSYFGGSSSVTSLRSAANKTKQSGQRVDLMHYHITARGQYWGT
WNEAETYYRDIMRNPDDINFVTVLREPRSHLLR
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mRNA from alignment at Scaffold_347:165444..166070-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=627bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGGTGAGATGCCGTATTGCACATC
ATTGCTCATCCAGCACGAACGACACGTCTTTTGTGTCGACGCACCAACAG
CGGTACGCGGGTTAATCCGTCTCGACAAGGATTGTCAACATGGTCCAGGT
AGTGGTTCAACGACAAGCAACAACTTTTTCCTTCCCGCGTTGGTGCCCGG
CCGCTAAAACATTTCTGCCTGGTGGTGACTAGACGAAACAAAGCGGGCAG
CGTGTGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGG
CACTTGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTG
ACGATATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTT
AGGTACGTACAGCCTGCGTCATCAGCAGGAGTATACCGCAATTCCAATGG
GCGGAAATATTGAGGTGTGGGATGCATCACAAGATGACTCGTTCATGTGT
CTTATGTGCATCGAGCGCTGACCAGTCCTTTGGGTACACGAAGAGATTCA
ACAGGCTGGTTTCCAGGCTTCAGGTGA
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Coding sequence (CDS) from alignment at Scaffold_347:165444..166070-

>EsuBft1973_3a-0001 ID=EsuBft1973_3a-0001|Name=EsuBft1973_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_347:165444..166070- (Ectocarpus subulatus male Bft15b)
ATGGATTCCTTCACCTTCCAGCTGTCGTATTTTGGAGGATCTTCGTCGGT
CACCAGTCTGCGCTCGGCCGCGAACAAGACGAAACAAAGCGGGCAGCGTG
TGGACCTTATGCACTATCACATCACCGCCAGGGGCCAGTACTGGGGCACT
TGGAATGAGGCGGAAACGTACTACCGAGACATCATGCGGAATCCTGACGA
TATAAACTTCGTCACGGTACTTCGTGAGCCTCGCTCGCACCTTCTTAGGT
GA
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