Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft820_4 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Length | 138 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_000710.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft820_4a-0001 ID=EsuBft820_4a-0001|Name=EsuBft820_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1380bp|location=Sequence derived from alignment at Scaffold_347:81124..83755- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCGCTCGAAGCGCCGATACCGCGCGAGAGAGAGGACGTACGGTGAC
GGCTTTGCTCGCAGCCTCCGCGACAACCCCGTCTAATCCCTGGTCGACAC
CTCACAAGTCACGGAGCTTCAACGACAACAGCAGCAACAATCGCGGCAGC
TCCTACGCCGTTGGTTACCGACGTCCCACCACCACCGGTCCTGCCGCCGA
CGACCAAACCACCACCACCGACTGCGGGGAGACGACGCTCGGTGGTGGTG
ACGATGACCTCGTCGGAGTTGTGGACCGGCTGCTCAGCTCGGGGGGTCAA
GATGAGGACAGCCTCGACCTGTGCTCGTCGACTTGGCAGAGCGTGGAGAC
CATGGCGAGAGCGCTAGCCACCGGGCAGAGCGTAGTGTCCACTATTTCGA
GGTGCTACAGGCTGCCGGGTCTGGGGCGGAACAACTCGGGCCCGCAGGTC
GCTGCCGAGGCTGCCCGGTGCAAGGCACGGCGAGCCGGCACGGAGGCGAT
GCATTCGTCGCTGCTCTCCGGCCGGTTTGCCGCCAAAGCATTGGCCATTT
TCCGCAGCCTAGGGCAAGCACCTCTCACGCACCCGGACAGCTTCTTTATC
AACTCGTCGAAGCTCCCGGAAGCCGCCAAAGCCCTCGACCCCGGTTTGGA
CGATGCGACGATTAGGGTATGGATGAAAGCGAACGGCTTCGAGCAGCAGG
GGCGACCGCAGTCAGACAGCCTCGAAGCGCTGTCGTGGACGGAATACCGC
CAGGCCCTTTCCGAACTGTGCCCCGCCTTTCGTCGGCACGGCATCAACCC
TACCACCTCGACCGAGCGCAACACCGCCGTGACGACGCCGATGGACACAA
AGCGCATCGGGAACAGCGGCGGCAGCGGAGGCTTGGCGTTGTCCGCTAGC
TGCCCCTCATTCACCAATCACGACCCCTGGGAAGCAGCGGTTGACAGAAC
GCCCGCATGCCGTTCCCCCGCTCGCCCCCGGCGTCGTGCCGGCTTGGAGG
ACGACGGGGATACTCACGCGGCGGGCGGGAGGTTGGGGGACTGCCTGCCG
AGGAGCCCCGGCGTGGACAGCTACGGCGTGCTTCGCAGGAAGCGGCACGC
GGCCGTTTCGCTGGACTACGAAGCAATCACGAGGGAGCGACCGCAGGTGA
TGCCGCCGTTGGACCCGTCAATTTTAGTGGATCACATCAAAGCGCAAGGC
CGGCGCGACCGCAAAAACCCCGGCAGCGAAGAAGGCGGGAGCTCGTCTCT
ATGGACGCTGAGCACCCACGAGCGACTATATAAAATACCCCTCCAGAAAG
AACAGGTGCTCAGGTGCTCTGGAAGAAGGTTGCTTCTACCAATCAGTTTT
TTTGTTTTTGCTGGAGGAGGTCTATTCTGA back to topprotein sequence of EsuBft820_4a-0001 >EsuBft820_4 ID=EsuBft820_4|Name=EsuBft820_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=459bp
MSARSADTARERGRTVTALLAASATTPSNPWSTPHKSRSFNDNSSNNRGS
SYAVGYRRPTTTGPAADDQTTTTDCGETTLGGGDDDLVGVVDRLLSSGGQ
DEDSLDLCSSTWQSVETMARALATGQSVVSTISRCYRLPGLGRNNSGPQV
AAEAARCKARRAGTEAMHSSLLSGRFAAKALAIFRSLGQAPLTHPDSFFI
NSSKLPEAAKALDPGLDDATIRVWMKANGFEQQGRPQSDSLEALSWTEYR
QALSELCPAFRRHGINPTTSTERNTAVTTPMDTKRIGNSGGSGGLALSAS
CPSFTNHDPWEAAVDRTPACRSPARPRRRAGLEDDGDTHAAGGRLGDCLP
RSPGVDSYGVLRRKRHAAVSLDYEAITRERPQVMPPLDPSILVDHIKAQG
RRDRKNPGSEEGGSSSLWTLSTHERLYKIPLQKEQVLRCSGRRLLLPISF
FVFAGGGLF back to topmRNA from alignment at Scaffold_347:81124..83755- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft820_4a-0001 ID=EsuBft820_4a-0001|Name=EsuBft820_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2632bp|location=Sequence derived from alignment at Scaffold_347:81124..83755- (Ectocarpus subulatus male Bft15b)
ATGAGCGCTCGAAGCGCCGATACCGCGCGAGAGAGAGGACGTACGGTGAC
GGCTTTGCTCGCAGCCTCCGCGACAACCCCGTCTAATCCCTGGTCGACAC
CTCACAAGTCACGGAGCTTCAACGACAACAGCAGCAACAATCGCGGCAGC
TCCTACGCCGTTGGTTACCGACGTCCCACCACCACCGGTCCTGCCGCCGA
CGACCAAACCACCACCACCGACTGCGGGGAGACGACGCTCGGTGGTGGTG
ACGATGACCTCGTCGGAGTTGTGGACCGGCTGCTCAGCTCGGGGGGTCAA
GATGAGGACAGCCTCGACCTGTGCTCGTCGACTTGGCAGAGCGTGGAGAC
CATGGCGAGAGCGCTAGCCACCGGGCAGAGCGTAGTGTCCACTATTTCGA
GGTGCTACAGGCTGCCGGGTCTGGGGCGGAACAACTCGGGCCCGCAGGTC
GCTGCCGAGGCTGCCCGGTGCAAGGCACGGCGAGCCGGCACGGAGGCGAT
GCATTCGTCGCTGCTCTCCGGCCGGTTTGCCGCCAAAGCATTGGCCATTT
TCCGCAGGTGTCTTGTCCTAATATGCCGCAGAACGCCAACACAGCAGTAA
ATAATAGTGTCTACAGAGAGGGGTGTTGCTTGGTGTAGGACGTGGGCGGT
GGCTGTTGATACTTCATGCATGTGCGGGGCGGGTGGACACATAGAACGTC
TTATTTTCTCCCGCAAACAGCAAACCGTACCCCATGCACAAAGAGCAGAG
CAACGTTGCACACAATTGCGCTAAAATATTGATGTGGAGACCAGCCTGTC
GAAAGCAGAAGTATGGTGCAGGACCAGCAATGATGGAGGTGGTGGCAACA
GGTTCAAAGAGTCAATAAGCTTTCCGCACAGACGTAAGCTATTGGCGGGG
AGCACAAGCGGAAACTAACTGATGGTGTTGATGGCAACCTCACCGAAGAC
ATTATTATGTAGAGAGTATCTCTTCTCGGTGGAAATAGGAGACAGCGAGA
TTCGCGTCTAAGAGCCAGCTAGGAGGCCTCATTTGGGGGCGCAAAAAGTT
GGCCCATTTGATCGTTGCTTGTGGCTGCAAGCAGAAACGTTTTGGTATCG
AGAAAATCTGTCTCTGAGCTTCACCAAAGCGACGTCCGACCGACCGCCCT
ACCAGGTGTAGACTAGAACTCGCATTCGTTCGAACCCCCTTGACACAGCC
TAGGGCAAGCACCTCTCACGCACCCGGACAGCTTCTTTATCAACTCGTCG
AAGCTCCCGGAAGCCGCCAAAGCCCTCGACCCCGGTTTGGACGATGCGAC
GATTAGGGTATGGATGAAAGCGAACGGCTTCGAGCAGCAGGTGATTTTCT
TCCTCTTCTTGTCGCCTGATGCTCGAAATGTCGAAGACTCTCAGTTTTAC
GGTAGGCTTGAGCAACGATACGCCATGTCGGCCAGCACGTCTCTTCCTAG
TCCTAGAAACAGGCTAACAAGGCTGTAACTTCGTGGCTCGATGCACAAGA
CGCGCGTGGACACCCCTGTCTCATGCAGCGTCTCCTTCGCCACCCGAAAC
CCTCACCTCAACGAAGGGGCGACCGCAGTCAGACAGCCTCGAAGCGCTGT
CGTGGACGGAATACCGCCAGGCCCTTTCCGAACTGTGCCCCGCCTTTCGT
CGGCACGGCATCAACCCTACCACCTCGACCGAGCGCAACACCGCCGTGAC
GACGCCGATGGACACAAAGCGCATCGGGAACAGCGGCGGCAGCGGAGGCT
TGGCGTTGTCCGCTAGCTGCCCCTCATTCACCAATCACGACCCCTGGGAA
GCAGCGGTTGACAGAACGCCCGCATGCCGTTCCCCCGCTCGCCCCCGGCG
TCGTGCCGGCTTGGAGGACGACGGGGATACTCACGCGGCGGGCGGGAGGT
TGGGGGACTGCCTGCCGAGGAGCCCCGGCGTGGACAGCTACGGCGTGCTT
CGCAGGAAGCGGCACGCGGCCGTTTCGCTGGACTACGAAGCAATCACGAG
GGAGCGACCGCAGGTGGGGCCGCGCCACTGAGCTGGGCGCGCCACGTAGG
AGTTGCCGGAACGAGTGGTGGGGTGTGCTTGGTCGTTGTATGCACTACTT
GCAGGACGCTTGCCCAAAGTCTTGCTTCGCTCATGTCGACAAGAACCGCC
CTGAACCACTGAGCAAGTAGCGTCTCCGAAGGCTCTGGAAGCCTGGTTGG
ATTTGTATGCCAACATCCAACCGAAATCGACAACATCAATCGCGTAGAAT
AGCAATCGACTGCCCCAACGTTTTTCTCGGCCCATGTTGCCAGATAACAC
CTTCTACTACCAAACGTTAGGCGTCGCTTGTTGGTTCACCGAACGCTTCT
TAGAGCCCCTTCGTTACATTTCCTGAGCATTTGGCAAACGTTACACAGGT
GATGCCGCCGTTGGACCCGTCAATTTTAGTGGATCACATCAAAGCGCAAG
GCCGGCGCGACCGCAAAAACCCCGGCAGCGAAGAAGGCGGGAGCTCGTCT
CTATGGACGCTGAGCACCCACGAGCGACTATATAAAATACCCCTCCAGAA
AGAACAGGTGCTCAGGTGCTCTGGAAGAAGGTTGCTTCTACCAATCAGTT
TTTTTGTTTTTGCTGGAGGAGGTCTATTCTGA back to topCoding sequence (CDS) from alignment at Scaffold_347:81124..83755- >EsuBft820_4a-0001 ID=EsuBft820_4a-0001|Name=EsuBft820_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1380bp|location=Sequence derived from alignment at Scaffold_347:81124..83755- (Ectocarpus subulatus male Bft15b)
ATGAGCGCTCGAAGCGCCGATACCGCGCGAGAGAGAGGACGTACGGTGAC
GGCTTTGCTCGCAGCCTCCGCGACAACCCCGTCTAATCCCTGGTCGACAC
CTCACAAGTCACGGAGCTTCAACGACAACAGCAGCAACAATCGCGGCAGC
TCCTACGCCGTTGGTTACCGACGTCCCACCACCACCGGTCCTGCCGCCGA
CGACCAAACCACCACCACCGACTGCGGGGAGACGACGCTCGGTGGTGGTG
ACGATGACCTCGTCGGAGTTGTGGACCGGCTGCTCAGCTCGGGGGGTCAA
GATGAGGACAGCCTCGACCTGTGCTCGTCGACTTGGCAGAGCGTGGAGAC
CATGGCGAGAGCGCTAGCCACCGGGCAGAGCGTAGTGTCCACTATTTCGA
GGTGCTACAGGCTGCCGGGTCTGGGGCGGAACAACTCGGGCCCGCAGGTC
GCTGCCGAGGCTGCCCGGTGCAAGGCACGGCGAGCCGGCACGGAGGCGAT
GCATTCGTCGCTGCTCTCCGGCCGGTTTGCCGCCAAAGCATTGGCCATTT
TCCGCAGCCTAGGGCAAGCACCTCTCACGCACCCGGACAGCTTCTTTATC
AACTCGTCGAAGCTCCCGGAAGCCGCCAAAGCCCTCGACCCCGGTTTGGA
CGATGCGACGATTAGGGTATGGATGAAAGCGAACGGCTTCGAGCAGCAGG
GGCGACCGCAGTCAGACAGCCTCGAAGCGCTGTCGTGGACGGAATACCGC
CAGGCCCTTTCCGAACTGTGCCCCGCCTTTCGTCGGCACGGCATCAACCC
TACCACCTCGACCGAGCGCAACACCGCCGTGACGACGCCGATGGACACAA
AGCGCATCGGGAACAGCGGCGGCAGCGGAGGCTTGGCGTTGTCCGCTAGC
TGCCCCTCATTCACCAATCACGACCCCTGGGAAGCAGCGGTTGACAGAAC
GCCCGCATGCCGTTCCCCCGCTCGCCCCCGGCGTCGTGCCGGCTTGGAGG
ACGACGGGGATACTCACGCGGCGGGCGGGAGGTTGGGGGACTGCCTGCCG
AGGAGCCCCGGCGTGGACAGCTACGGCGTGCTTCGCAGGAAGCGGCACGC
GGCCGTTTCGCTGGACTACGAAGCAATCACGAGGGAGCGACCGCAGGTGA
TGCCGCCGTTGGACCCGTCAATTTTAGTGGATCACATCAAAGCGCAAGGC
CGGCGCGACCGCAAAAACCCCGGCAGCGAAGAAGGCGGGAGCTCGTCTCT
ATGGACGCTGAGCACCCACGAGCGACTATATAAAATACCCCTCCAGAAAG
AACAGGTGCTCAGGTGCTCTGGAAGAAGGTTGCTTCTACCAATCAGTTTT
TTTGTTTTTGCTGGAGGAGGTCTATTCTGA back to top
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